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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0282100 |
| Transcript ID | LotjaGi1g1v0282100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Spermidine synthase; TAIR: AT5G53120.1 spermidine synthase 3; Swiss-Prot: sp|Q94BN2|SPSY_ARATH Spermine synthase; TrEMBL-Plants: tr|A2VC29|A2VC29_LOTJA Spermine synthase; Found in the gene: LotjaGi1g1v0282100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68775953..68779418) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGGACGCCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAGGAATGGCTTAGAGAA GGAACTTCCTTCATGTTGTTTGAAGGCTATTGCTTCAGACCCTGAGTTGGATGCAAAATGCCATTCCACCGTTGTTTCTG GGTGGTTCTCAGCACCTCAAACTTGCTCTGGTCATTATCAGCTATTTAATTTTTTGATTTCACTGTGTGGCACTACATAG AGCCAATCTCTGGAGGATAAAATATAAGTGCTGTTAATAACCCTCTTCCTTTTTACCATCTTTTTACAGGGAAATCTGGG AAAGATGCTTATTTCAACAACCCAATGTGGCCAGGTGAGTGTATGCCGTTATACACGCCGCGTGTATTATTGCCTTGTAA CATTGAAGTGCCAGCTTTCCCTTCATGTAACCTGAATTACAAACCTTGCTTTTAGAAAATGATCTTGTTCTTCTGTTGAT GGCCGTGATCCGTGATTATCATAAACTTTTGAACCTTCATAGAGAAGGCTGAATGCGGAAGAAATATGAAAATCCTTGTA CAATTTGGCTAAGGAGGATGAACTCGGGGGTTTTTTTCGTTTTAAATTGTATTTTTTTTTTCACTTTTAATTAGAAAAGT GTCACCTTTTGTAAACAATCTTCTATTATTTTCATTTATTTTGATTATTTCCAATACAGTTTTAAAAAAATCAGGGCAAA ACAGCTTCGCTATAAACCAAGTCCAGGGAAGGACCGCACCAAGTTTGTGGATCTAATGTAGACACTCTTACCTTGCATTT TTGTAAGAGGCTGATTCCATGGCAGCAACCTTGGCGTTGCGAACGTTGCGCCGAGAAAACGTTACTAGATTTTAGATGTG TTGAACCTACTTTCCTTGTTTGTGTTAAACCTTTTAGAAAAACATCCTTATTTCTATTTACTTATAACATTGGATATTTT GTTTTGTTTTCTCCGTTTTGAGCTACAAATCATGCCCAATTGCTCCCAAATATACATATTTTTAAACATTTTTAAAAGCA CTCATTCCCATTGCCGAATATGCATCTTCTTTTTTTCCTTGTTTGGATTGCTTGACTACTGCTGATGGTTTCTGTGTCTA TCATTAGGAGAAGCCCATTCAATCAAAGTAGACAAGATCTTGTACAAGGAAAAGTCAGAGTACCAAGAGGTCTTGGTTTT TGAGGTTTGGCATCATCTTCTTATAATGTTCTCTAAATTCTACTTGTAAGTGGTTAGTTATTAACACTTCTTTTTTAACA GTCATCAATATATGGGAAAGTTCTTGTACTTGATGGGATTGTTCAGTTGACTGAGAAGGATGAATGCGCTTACCAGGAGA TGATAGCTCATCTTCCCCTTTGTTCAATTGCGTCCCCAGAAACTGTAAAGTCTTTTTTTATTTTTATATGATTGATCATT GTTTCGGGTCTCACTTATATCATATCTCTTTGTTGAACATTATATTATATAGTAGCTCCAGATTCAATTTCAAAAGTACA GTTCTTTGTTATATCGCTTAGGGAAAATGATATTGCAGAAGCTTTTTGGTATTCAGCAGTTTAGAAGTTGCTTCTTCATG TTCTATTCTTTAATGTTTGTCAGTGCTATCATCTTGATAGACTAGTTGGTTGTGTTTCCTCTTCTCAATGCTTTCATCTG CATGGAGGGAAGCACTTGAAACATGTGAAAATTTGAATTTGAAATCCTTTTACATTTATATTGTTTTTTTTTTTTGCCTT TTCTGCTTGAATAATCTGCTAATTGATTTGTTTGTTATTGATTCAGGTTTTAGTTGTTGGTGGCGGAGATGGCGGGGTTC TAAGGGAAGTCTCCCGCCACAGCTCTGTGAAGCGTATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTAAGTTGT GGGCCTTATGACATATTTTAGTATAACTGATTCCATTGATGAGATAAGCTTTTTATTTCTATTGTTACTTTGTAGGTTTC TAGGAAGTTTTTTCCAGAGTTAGCTGTTGGATTTGATGATCCTCGAGTACACCTGCATGTTGGCGATGGTTTGTTTTTAT ATCATACAAGTCTCATTTTAAGTTTGTTGAGTTGCCTAGCCTGGCTTTATATTTACCAATTACAAACTAATATAAGGTTA TGTGAACATCTTCACTTGATATTTTCTTCACCCACTTTTTTTGGCAGCTGTTGAATTTCTTAGATGTACTCCTGAGGGGA AGTATGATGCTATAATTGTTGATTCCTCAGATCCTGTGGGTAAGCTATTTCAATTTAAAATAATTCACCCAATGTATTCA GTTAATAATGTGTATTATTAGAATTAATGCTAAATCTCAAATGGAACGTAAACTGTGTTTTGAGGAGGGACTATACTTTT CTTCAGTTTAGTGGTTAACTAATAGAGCCTCAGACACAGAATAAGAAATTGCAGAGTAAGAAACAGTGATAACCGAGAGC TTTATTGAATGATCAAAAGTGGATTACAAAAGGAATGGAGTATTTGCCCTTCAATTCCTTACTCAGAGCTAGGCTCCGTA GAGGAAGTTACAACTTCCTCATCATTCTCACTAATTACAATATCAAAAGGTCATCTCCACATTTCCTTCCTATTCCTTAT ATTCAGCAACTAATCTTGCCAGCTCTCCTTTGCATTTGTCCTTTTCTTTAACTAACTTGGTCAGCAATTCCCTTCTTGCC CCTTCTAGAATAAACCTGAAAGATTCTGGGTCTCTTTGTCTTAGTATGAATTAATTCCTCACCTGGCTTAGCCTTAACAC CTCGGGTCCTATCATTAACTAGTTGAGGTTGGCCTGAACTCTCGTGCCTCAATGTGACATCCAAGTGTTTAGTCTTCATT TATGAGAAATTTCAGTGTTTTGTTGGCTGTACAATGATTGACTGTCTTTGTCACAATTCTGATTTGAATTCTATCTGAAA GCTTCATTGTCCTATGATTTTTTTCAGAATTTTTGTTGGTAAATCATTTACTTTGAATTATCCACTAAAATATAAATGAT TAAGCTACATACTAATTTTTTATTGGTAGATTCAACAGATTATTACTCTTCCTTTTTTGGTTATTATGATCAAAAGCTTA CAAGATGACTTTTGTATTTTAGGTCCTGCCCAGGAACTTGTAGAGAAACCATTTTTTGAAACATTAGCGAAAGCATTGAG GCCTGGTGGAGTTCTCTGTAACATGGCAGAAAGTATGTGGCTTCATACACACCTTATCCAAGATATGATCTCCGTCTGTA GAGAAACATTTAAAGGTTCTGTACATTATGCATGGGCAAGTGTTCCTACATATCCGAGGTAGTTATGCATTTCTATTTGC TAGTGAATTAATATTTTGTTCTTACTTTGAAGAATAAGGGTAACTTTTTCTTAAGGTGGGGGCAATTCAGCCTCTTGAGG TACCACTGACATGGTCCGATCCATAA
CDS sequence (LotjaGi1g1v0282100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGACGCCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAGGAATGGCTTAGAGAA GGAACTTCCTTCATGTTGTTTGAAGGCTATTGCTTCAGACCCTGAGTTGGATGCAAAATGCCATTCCACCGTTGTTTCTG GGTGGTTCTCAGCACCTCAAACTTGCTCTGGGAAATCTGGGAAAGATGCTTATTTCAACAACCCAATGTGGCCAGGAGAA GCCCATTCAATCAAAGTAGACAAGATCTTGTACAAGGAAAAGTCAGAGTACCAAGAGGTCTTGGTTTTTGAGTCATCAAT ATATGGGAAAGTTCTTGTACTTGATGGGATTGTTCAGTTGACTGAGAAGGATGAATGCGCTTACCAGGAGATGATAGCTC ATCTTCCCCTTTGTTCAATTGCGTCCCCAGAAACTGTTTTAGTTGTTGGTGGCGGAGATGGCGGGGTTCTAAGGGAAGTC TCCCGCCACAGCTCTGTGAAGCGTATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAGTTTTTTCC AGAGTTAGCTGTTGGATTTGATGATCCTCGAGTACACCTGCATGTTGGCGATGCTGTTGAATTTCTTAGATGTACTCCTG AGGGGAAGTATGATGCTATAATTGTTGATTCCTCAGATCCTGTGGGTCCTGCCCAGGAACTTGTAGAGAAACCATTTTTT GAAACATTAGCGAAAGCATTGAGGCCTGGTGGAGTTCTCTGTAACATGGCAGAAAGTATGTGGCTTCATACACACCTTAT CCAAGATATGATCTCCGTCTGTAGAGAAACATTTAAAGGTTCTGTACATTATGCATGGGCAAGTGTTCCTACATATCCGA GGGTAACTTTTTCTTAA
Protein sequence (LotjaGi1g1v0282100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDAAGRGLECQKTMDGKESNRNGLEKELPSCCLKAIASDPELDAKCHSTVVSGWFSAPQTCSGKSGKDAYFNNPMWPGE AHSIKVDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIASPETVLVVGGGDGGVLREV SRHSSVKRIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGDAVEFLRCTPEGKYDAIIVDSSDPVGPAQELVEKPFF ETLAKALRPGGVLCNMAESMWLHTHLIQDMISVCRETFKGSVHYAWASVPTYPRVTFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 294 | 294 | 2.0E-175 | – | |
| PANTHER | 1 | 294 | 294 | 2.0E-175 | – | |
| Gene3D | 46 | 119 | 74 | 8.7E-28 | ||
| ProSiteProfiles | 53 | 298 | 246 | 90.629 | ||
| Hamap | 54 | 296 | 243 | 26.616 | ||
| SUPERFAMILY | 71 | 293 | 223 | 8.0E-74 | ||
| Pfam | 75 | 122 | 48 | 5.7E-21 | ||
| TIGRFAM | 79 | 296 | 218 | 5.6E-82 | ||
| Gene3D | 120 | 298 | 179 | 5.4E-72 | – | |
| Pfam | 125 | 294 | 170 | 1.0E-60 | – | |
| ProSitePatterns | 146 | 159 | 14 | - | ||
| CDD | 167 | 253 | 87 | 8.06996E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi1g1v0282100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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