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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0286900 |
| Transcript ID | LotjaGi1g1v0286900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT2G40925.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q3E7D1|FB131_ARATH F-box protein At2g40925; TrEMBL-Plants: tr|G7LFI2|G7LFI2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0286900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:69694770..69700257) extracted from Lotus japonicus Gifu genome v1.2.
CGTGTTTTCGTGCTTTTAAATTTATCAAACAGAAAACCAAGCAGGCACACTATGTAATCCGGAGATCGAACTGGTTTCCA CATCATATCGTGATCTTCTTTCTTCCATTCTTTCCTCCGTTGTTCTCAACCGCGCCACATCACCGTCTCTGTTTCCGCTA TCGTTCTCTTTCTCTCTCCGAGGTGCCAATTTAGGGTTTTTCTTTGAATTTCACATAAATCAATGTCTTCTTTTTAAGGT GTTCTGTGTCTTGTTTCTTTATCTTACACATGCCTAGCTTGTTTCATATTGTTTCTTTATCTATTCACTGCTATATCAAC ATATTTGATGTTGCTCTATGTGTGTGTGTGTGTGTGAGTTACTTACTTAATGACTATTTCTGTCTTCCTGCTCTGCCAGG TTTGGACACTAAGGAAAAACCAATTCTAGTGAAATCAACATGTATTATTATTGTTGATGGAATTCCAATCGAGACAAGTT AAATCTATGGCAAAGGAGATACCTGATGATATTTCTTTTACTATTTTGTCGAAGCTGCCTCTCAAATCTCTTAACCGATT CACCTGCGTACACAAATCATGGGCTGGTTTACTTCAAAACCCTTATTTCATGACCATTTTCCGCGCCAATTTCCTATCCA AGCATCACTCTTATTACAATGATACATCTCTTCTCTTACAGCAGACACCGCATCTCATAGATTATCTCATGGGTTGTGGC AGACCGCCGTATTTGCTTTCAGGTGACAAGTTTCAGAATAGGGTCAAATTAGATTGGCCTCTTCCATTTCAAGTCGATGA CAGGTTCATCGTCATTTTGGGATCGGGTATTCATGGCACATTTTGTCTCAACCAAAGCAAGAAGTTTGTATTGTGGAACC CAGCTACTGAGGAATTCAGAATTATTCCTCCCAGCCCTCTTGACTCTCCACCTGATCTGGGTGTTATGATTACTACTCCT CATGGATTTGGTTATGACCCTGTTAGAGATGACTTTAAGGTGATTCGAGAATTAGTAACTTTTCCAGATTACACTGCCTT TGAAGATGATTGGCCAATTGCCCCAGACCCAAGCATCTTTTGGGAGATATATAGCCTAAGAAGCAACTCTTGGAGGAAAC TTGATGCTCATATGCCTATTATTGTTGAGAGACCCGCCAAGTGCACTGACACGTACGTGAATGGAGTGTGTCATTGGTTG GGTATTGTAGATTTACATGGTGATGAAGAACATTTGGCGTCATTTAACTTGAGCAATGAGGTTTTCCTTACAACACCCTT ACCGTTTGATCTGGGTGATAGATCGCTGCAGAAATGCTTGGTGGTGTTAAATGGGTCCATTGCTGTGATATCAGAATCTG CAGAAACAACTTTTCACATTTCAATTTTGGGTGAACTCGGTGTGAAGGAATCGTGGACTAAACTTTTCACTATTGGACCT TTGCCTTGGGTTGGGTTTCCTATTGGGGTGGGGAATAAGGGTGATGTATTCTTAAGAAAAGAAGAAAAAGGGGAACTAGC TTTGTTTGATTTAAGTTCCCAGATGCTCGAGGATATTGTCACTAAAGAGCAGTTAGATAGTCATCGAATAATAATTTATA AGGAAAGCCCTCTTCAGATAGGACAAACAGAATATTGATTGCTTTCACTGACTATATTTATGATGATGGCTATCAAGATT TATTACCATGTTGAATGTTATGAAGCCATTTGATGGGTACTCAGAGTTAGTTAGTAGATTAGTTAGTCAGTGAGAGAGGA AATATGAATAAGAGTGAGTTAGAGAGTATTAGTCATCTTTTGAGATCATTGTTATGGGAATTGGGAGAGACCAGGTTCTC TCTCTAGTGCTTGTGTTTCTATCATCATTTGTATATAATTAGGCTATTCAGTGAATTCACTTGCCCTTATCATATCTGCT AAACTGGGCTGCCTGGTGGTCTTGTGATGTCTGGCCCAATTACTTCTTCACTCACATGATGGAAGATTCACGAGCATGAC AAAAGATGACTGAAGATGTCTAGCCCCATGCAGACGCTGGCTGCTCCTCACCGTGGCTGCCAGCTTCACGACAAGATGAT GTGCCTTACCAACTACACACGCATCACGGAAGATGACGCGCTCCTCACCGTCGTGACCAATTCCCCACGATTTGCTCTGT TGAGTAGGTGCGCTCAGTCCCATCAATGCGGAATTGGATTGTCAAGCACTCCTTTAGCCGGGTTAGAACCCTAATTTTAC TATTTGTGAGTGAGTTGTTCACTGTTGCTCTCGTAGAATCATTGTATTGTTGCCATAATTGTGGTAGCCGTAGGCTATCC ACTTGGCTCTTGTTGATCCTGAGGTTGATGTCTTCTTTTATTGGCTATTTAATTTAGGGGTCTTACTTTATACCTTAAAT CTTCATGTTCATTGTTTGGTTGTGATTGACCATTTAATGTTGGTTAATTCTCCTAAGATGCTCTCTTTGAAAGTATAATG TAGCTGTAAACAGATTCTGTAACAGATTCTTGGTGCTTTCTTGACCCAATGTTGTAACAGATTCTACTCCGTAATGTTGT AACTTGCTGTTTTTTTTTCTCTCTTATTAGTTTTAGTTTCAGATTTCTGTTCTTAATTACATGATGTGTTTGAGTATGTT CTTATTCTTAACACTCTTTATTTTCCCATGTGCTTTAGGTATATGTTTTGAATGGAAAGAAAGTATTTACTCAATTGTCA TACGTGACAAGGGTTATTTCAAAGTCTTCCCATGAAATGTACTTATCATCACAACATTGCCAGCTACTTGAGAATCACAG GAATGAAATTTTGGCTGAATGTGATATTTGCATATCAGAGCTTGAGAGTTGAAAGTTCTTTTCTCTGTTGACAGTTTCTG CTACACTTGGGTGTTCTTTTTGCTTTTAGCCTTTGCATTTATGGTATGAATTTTAGCCTCCTATTAGTTGTACTTTTTGT TTTGGCTTGTACAGAATTGAGCTTTTTTACCTTCACTCTTTATTTGCATGAGAGCTTTTGTTGGAGTTTTACACTCCTAT AGTTCTATATCTGCAAGTCATAAGGCAAAGTAAATAAACACTACTATCAAGACAAATGACAATTTCCTTCGGGGTAAAAA ATTCACAATGGAAATAATGTTTTATCTGTGAACTTGGTTCTCACTTCTTAAAAGAGAAAAAAAAAAAAAAAAAAACGGAG AGGGGGAAGGGAGAGAGCAAAATAGGAACATGAGAAAAAAGAATGTATCACATCCTTAGTCCCATAGGGAATGAAACAGA TGCATTTCCAATCTAAGGTAGAAAACCTTGTCCTAGAAAGCAATCTTAATCTTTTTAGTTAGTTGGCCATAAAGAGACTG TAAACTTTTAGCATATAATTTTTTCATGTATTACTAGCTTATTCTTTTGCTTTCAGATGTTGGGTGTAAAAAGCAAGGAA GAGAGAAATTTTTAATCTGAATTTCAAAGAGGTAACTTGATAATGAAGTGGAATTATTTTAATTTGTTTGATAAGCATGG AAGAAACAAATTGTTAATCTGTTTGACTCACTGTTGGTAGTGGAAATGAAGTAACTTGATAATTAGTGACATACTCACTT AGGTTTCTTTGGGTCCAAGACTGCACAAGAACAGAATTTTGAACTCCGTTTTAATGCAAATACTTATTTGGATTTGTCTA TCTTTGCCATACTTGTGTAACTTGACGAATTGAATAGTTAACCAAATTTTTTATATTTTCTTGCTGATATTTTATGACAC GGAAGTTTTCCCTGAATGGAATGGTTCTTAGTTTCATTTTCTAATTTTTTAATTAGATCAAACATTAGTTTTGTCTTTTT CATACTTCACCAAAAAGTCATTGATGTATTGAGTGGATAACTAGATATCATTGTAGAAAAAATTGGAGCTGCTTGAATAT TTTCCTTGTGCTTATACTTTCTATAGACTAACTACTGCATTATTTAACAAAATGTTTTGTTTCCTTACTCTTTAATTTTG AGTACCTTATAATTCAATATGTCCTACAGTTTATAATTTTCCATGTGCATGTGTCCCTCATGGTCATAGTGTGTGTCTTA CAATTAACAATAATATCTCTATTGGCTTATTGAGGTAGTCATTTTTTGAATTATTAATAGGTTCAATAGGATGAATCAAC AACTGGTGAGCACCAAAGCAGAGTTTCAATTTGGTAAATTGAACCGGTAGTGACTCCTTTCTATGGTTATCCACCTCTAT TTTTAAGGCCCAAGTTTCCATGGCAACCAGGAATGCCAGGTAACATGAGTCATTCCTTGATTATTTCAGCTTTCATTGAA AGATTTCTTGCTTGGATTTATTTGTTATTGTGAATAAATCACTCATATTTATTTCACTTTAACACAAATATCAGATGTGG AGAATTCAATTCAATACTGGTTATGTATGGCTGTGTGTGAGAGAGAGACAGAGTTCAGTGACTGTGTTAAAGAATTAGTT TTGGTCCATTAAATTGTCATGTATATTAGGACTAAGTTTATGATGTGGATGAAATTGAGCAGCAGCTTTTGTGTTCCCAG ATTTTATTCTCATCCCTATCCTTTCAGGTTGTGCGTGTGACTAATGATCCTTGTCATTGATTTCGCAGATGATGAGTATG ATTTAGAAAATGCTTTCAAGAGAGCTGTGCCATGGCTTGAAGGTGGCTTTGTCATGAAGGATGAATTAAGTTCAGTCTTC GATGTTTTTAGTTTGTTGCAAGTTAGTTAATATTGTTTTTCTTTTAACTTGCTTACTTTGAATACTTAAGCATGCATTTT TCTTCATTGCAAGTTGGTTAATAGCTTTCTCTTATTTCTGTTGAATCAATGGATTTTTATATCATTAACTAAAGATATGC TACTTATTTTTACTGCTTGCTGAGTTACTGTGGTGTTTTGGTTGAATGACTTCTGATAATTATCTTAACTAATTTCTCCG TTTAAGCATACAAGTGGCAGAGTTTCACATAATATGGCTTCATTTGAATGAGCTGAAGTTACCTTTGGACATTCTCTTCA ATAATATTGATGACATTCATTGTTTGGTGTTGCTTCCTACTGCAATGTCCTGCTATGCTTATATTTTTTATGTGTCGACA GTAACACATACCGATGATTATTGTAGTACTTTCTTAGCCGATTGTAACAGACATCTCTATATGTTTTAAATTTGAGTCTT CACTTTGGACATCTCATTTATCCGTGTAACTTATCTCTTTAAAATACATGTTCTCACTATTTTCCTTGAAGCTTGACTCT CACTTAACATTATTGTAAGAAAACTTCAATTCAACTGTACGACAAAAACAACGAAAGCTTTATCCAACTAAGGTCGTTTA TATGGATCACTCGATCCATTTGTTACTAATTATCTTCAACTTAAGAAATCGCAGAAACTCATAAAGTCTTCATCTTCATC AATACCATCTTCCTCAAAATCAGCCACTACATAACCCTAAACTATATA
CDS sequence (LotjaGi1g1v0286900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATTCCAATCGAGACAAGTTAAATCTATGGCAAAGGAGATACCTGATGATATTTCTTTTACTATTTTGTCGAAGCT GCCTCTCAAATCTCTTAACCGATTCACCTGCGTACACAAATCATGGGCTGGTTTACTTCAAAACCCTTATTTCATGACCA TTTTCCGCGCCAATTTCCTATCCAAGCATCACTCTTATTACAATGATACATCTCTTCTCTTACAGCAGACACCGCATCTC ATAGATTATCTCATGGGTTGTGGCAGACCGCCGTATTTGCTTTCAGGTGACAAGTTTCAGAATAGGGTCAAATTAGATTG GCCTCTTCCATTTCAAGTCGATGACAGGTTCATCGTCATTTTGGGATCGGGTATTCATGGCACATTTTGTCTCAACCAAA GCAAGAAGTTTGTATTGTGGAACCCAGCTACTGAGGAATTCAGAATTATTCCTCCCAGCCCTCTTGACTCTCCACCTGAT CTGGGTGTTATGATTACTACTCCTCATGGATTTGGTTATGACCCTGTTAGAGATGACTTTAAGGTGATTCGAGAATTAGT AACTTTTCCAGATTACACTGCCTTTGAAGATGATTGGCCAATTGCCCCAGACCCAAGCATCTTTTGGGAGATATATAGCC TAAGAAGCAACTCTTGGAGGAAACTTGATGCTCATATGCCTATTATTGTTGAGAGACCCGCCAAGTGCACTGACACGTAC GTGAATGGAGTGTGTCATTGGTTGGGTATTGTAGATTTACATGGTGATGAAGAACATTTGGCGTCATTTAACTTGAGCAA TGAGGTTTTCCTTACAACACCCTTACCGTTTGATCTGGGTGATAGATCGCTGCAGAAATGCTTGGTGGTGTTAAATGGGT CCATTGCTGTGATATCAGAATCTGCAGAAACAACTTTTCACATTTCAATTTTGGGTGAACTCGGTGTGAAGGAATCGTGG ACTAAACTTTTCACTATTGGACCTTTGCCTTGGGTTGGGTTTCCTATTGGGGTGGGGAATAAGGGTGATGTATTCTTAAG AAAAGAAGAAAAAGGGGAACTAGCTTTGTTTGATTTAAGTTCCCAGATGCTCGAGGATATTGTCACTAAAGAGCAGTTAG ATAGTCATCGAATAATAATTTATAAGGAAAGCCCTCTTCAGATAGGACAAACAGAATATTGA
Protein sequence (LotjaGi1g1v0286900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFQSRQVKSMAKEIPDDISFTILSKLPLKSLNRFTCVHKSWAGLLQNPYFMTIFRANFLSKHHSYYNDTSLLLQQTPHL IDYLMGCGRPPYLLSGDKFQNRVKLDWPLPFQVDDRFIVILGSGIHGTFCLNQSKKFVLWNPATEEFRIIPPSPLDSPPD LGVMITTPHGFGYDPVRDDFKVIRELVTFPDYTAFEDDWPIAPDPSIFWEIYSLRSNSWRKLDAHMPIIVERPAKCTDTY VNGVCHWLGIVDLHGDEEHLASFNLSNEVFLTTPLPFDLGDRSLQKCLVVLNGSIAVISESAETTFHISILGELGVKESW TKLFTIGPLPWVGFPIGVGNKGDVFLRKEEKGELALFDLSSQMLEDIVTKEQLDSHRIIIYKESPLQIGQTEY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 352 | 342 | 1.7E-31 | – | |
| PANTHER | 11 | 352 | 342 | 1.7E-31 | – | |
| SUPERFAMILY | 13 | 61 | 49 | 6.15E-8 | ||
| SMART | 15 | 55 | 41 | 2.4E-4 | ||
| TIGRFAM | 125 | 346 | 222 | 2.4E-25 | ||
| Pfam | 241 | 358 | 118 | 1.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0286900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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