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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0314100 |
| Transcript ID | LotjaGi1g1v0314100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonucleoside-diphosphate reductase; TAIR: AT2G21790.1 ribonucleotide reductase 1; Swiss-Prot: sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit; TrEMBL-Plants: tr|I1JY66|I1JY66_SOYBN Ribonucleoside-diphosphate reductase; Found in the gene: LotjaGi1g1v0314100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75898137..75903582) extracted from Lotus japonicus Gifu genome v1.2.
CAACCATTCTCTCTCTATATATATTCACGCAATCACGCGATTGTTCTCAATTCTCATCACAGTGGTGGTTAGACTCAGAC TCAGAGAGAAGAAGAAGAAAGATGTATGTGATAAAGAGAGATGGGAGGCAAGAACCGGTTCATTTCGATGCGATAACCGC ACGCATCAAGAAACTCAGTTTAGGATTGAACACTGAGCACTGCGATCCCGTTTTGGTTTCTCAGAAAGTGTGTGCCGGCA TCTACAAGGGTGTTACCACCACTCAACTCGATGAATTGGCCGCTGAAACCGCCGCCGCCATGACCACCAACCACCCTGAC TACGCTTCTGTCAGTTCCTCTCTCCATTTCCCCAATTTTTTGTAATAATTTTGTCAATTTCTGCGTTGATTGATTGATTG TTGTTTGAATTTCTCAGTTGGCTGCCAAAATCGCTGTTTCCAATTTGCACAAGAACACCAGAGAATCGTTTTCCGAGACG TAAGTATGATCGAAGAAATGATGATTGTTTGTTTAAAATTGTTCAGTTCAGCTAGTGGAATTTTGATGTATTTGTCATGA TTGAAATTTTGGTGGATTTAGGGTTAAGATCATGTATGATCATTTTAATGAGGAATCTGGAATGAAGGCTCCTCTAATCG CTGATGATATTTATGAAATAATCATGAAGGTACATGCTTATCTTGTAATTTTTTACCATAGATCAGAAGATTGGTTTAAT TTTTATTTATTTTTTGTGATTATTTGATATGAAATGTCTATAGGTTTGTTTAGCTATTGTTCTTTTGTTTGGGGTGATGA ATTCAAGTTTTCATATTTTCTGTTTGCTTATAGAATGCGGTGCGATTGGACAGTGAGATCATCTATGGCAGGGACTTTGA CTATGATTATTTTGGTTTCAAAACCCTTGAGAGATCCTACCTCTTGAAGGTACAAGGAAAGGTTGTGGAAAGGCCTCAGC ACATGTTGATGAGGGTTGCTGTTGGAATTCACAAGGATGATATTGAATCGGCTGTCAAAACCTACCATTTGTTGTCTGAA AGATGGTTCACTCATGCTTCTCCGACACTTTTCAATGCAGGAACACCTAGGCCTCAAGTATGATTTCAGTTACATCTCCC CTTGTCTTTGTGTGATTTCATCTCCCTTTTTTTTAGTGATGTATTTGTGAATTGATGATATGAGAACTCATTTAAGTGAC TGTTTTTGTGAATTGGCAGCTGAGTAGTTGCTTTCTAGTGTGCATGCAAGATGATAGTATAGAGGGTATATATGAGACTT TGAAGGAGTGTGCTGTCATCAGTAAATCAGCTGGAGGAATTGGTGTCTCTGTTCACAACATTCGTGCAACAGGAAGTTAC ATTGGTGGGACTAATGGGACATCCAATGGAATCGTCCCCATGTTGCGCGTGTTCAATAATACTGCCCGCTATGTTGACCA AGGGGGAGGCAAGAGGAAAGGTGAATAATTGAGTAATTCCTTTATTTAATGACCCCTCCTAAGTTGCCTTCCTTACATGA CTACATGGTTCTTATAGGTGCATTTGCTGTGTACTTGGAGCCATGGCATGCTGATATATTTGAGTTCCTGGATTTAAGGA AAAATCATGGAAAGGTATGATTGGAAATGTTTAAAGGTTGTTGGAGCAATTTGCTTTGGTTGTTGCAATGGAGTTGTATG GACATACTTTATTGTTATCTTCATGTACTGGTGTCATATTTGCAGGAAGAACATCGTGCTCGGGATCTGTTTTATGCTCT TTGGGTGCCTGATCTTTTTATGGAAAGAGTTCAGAAAAATGGAGAATGGTCTTTGTTTTGCCCCAGGGAAGCACCGGGTT TGGCAGATTGCTGGGGTGAGGAATTTGAGAAGCTTTATCATCGGTATGAAAAGGAAGTAAGTTAAACTCTGACAAGTAGG CTTATTTTCTTGCATGTTCAAGGTAGTGCTTTTCCTTATTAGAAGGCCTGGTTTTTACTAATTTTTATCATGGATGTAGG GAAAAGCAAAGAAGGTTGTTCAGGCCCAGAATCTGTGGTTTGAAATATTGAAGGCACAGATAGAAACTGGAAACCCTTAC ATGCTTTTTAAGGTTAACTGCTCAATCTCTACATGTTTTTGCGTCACTATAATTTGAGTTTATCATTTTTGTGTGTAAAA TGAACCCTACATTTTTCATTGTGCTAGGATGCTTGCAATAGGAAAAGCAATCAACAGAATCTGGGTACAATAAAGTCGTC TAACTTGTGTACTGAGATAATTCAGTATTCAAGTCCAACTGAGACGGCTGTATGCAATCTAGCATCAATTGCACTACCAC AATATGTAAGAGAAAAGGTAAGAGTTCTCTTGTATGCTCCTGCTCCCATGTATTTTGGGATATGATTTGGTTTCTAGACC TTTTTTTTCCTTCTCGATTTGAATATTTTTCCTCCGGGCTATAGGGTGTGCCAGTGGAGTCTCATTCATCTAAGCTTATT GGGAGCACGGGCTCTGGAAATCGGTATTTTGACTTTGATAAACTAGCAGAGGTATAATAACTGATTTTCTTGTGCTGTAA CTTGTATACTTTCCCTTGTATCATTATATATTACAAGACTTGTGATGGTTCTAATTTTGTTCTCATGACTTATTACAGAT TACTGCAGTAGTCACAACAAACCTGAATAAAATAATTGATGTCAATTACTACCCAGTTGAGAATGCAAAACGGTCAAACT TACGGCACAGACCCATTGGTATTGGAGTTCAGGGACTTGCTGATACATTCATGCTACTTGGCTTGGCATTTGATTCACCA GAGGTAAATCTTGTTTTGGGGGCTGATGTTTGTATCCATTTTGAGTTCGCTGTACCTCAGTATGATAGTTTACTCATATT TAATGCAGGCTCAACAATTAAATAAGGAGATATTTGAGACTATATACTATCATGCTCTAAAAACTTCATCTGATTTGGCT GTGAAAGAAGGTCCCTATGAGACATATAGTGGTAGTCCTTTAAGCAAGGTATGCCAACTTAAGAGGATTTTCAATGCCCT CTTTTTTGAATCTTGAAGTGTAATTATACTGCCTTGTTTTTTTTGATGCAATGGCGCAAGCATCGCATGTATATTGAACT TGCAGTCAGAGGTCTAAAATTAGTAATGTTCACATCTAAGATGTTTAGTTTCTTATGTGACTTCCATATTGGCTAGGGAA TTCTTCAACCAGACATGTGGGGTGTGACACCCTCCAACCGTTGGGATTGGGATGCACTTCGGGAGACGATATCAAAGAAG GGTGTACGAAATTCACTTCTGGTGGCCCCTATGCCAACTGCATCTACAAGCCAAATTCTTGGAAATAATGAGTGTTTTGA ACCATACACTTCAAATATCTACAGTCGTAGAGTTTTGAGGTTTGCTTCCCCATCCCATGTTATTATTCTGTCCTGGTTTA TTATTGTCCTATTAAATTTGCTTACTATTTGTCTTCAGTGGTGAATTTGTTGTTGTGAACAAACATCTTCTTCACGACTT GACTGAAATGGGATTGTGGTCTCCTACAATTAAGAATCAGATAATCTATGAAAATGGTTCGGTTCAAAATATTTCAGAAA TACCTGAGGAACTGAAGGCCATATACAAGTATGAGATTTATGATTTCTCAACTTATCAAAGGTTTGCTTAATGTATGCGC CTTAACATAATTTTGTTTGGGCAGAACTGTTTGGGAAATCAAACAAAAGACGTTGGTAGATATGGCTGCTGATCGAGGAT GCTACATAGATCAGAGTCAAAGCTTGAATATTCACATGGATCAACCCAACTTTGGGAAGCTAACTTCCTTGCATTTCTAT GCATGGTCCAAGGTAGCAGCAACTTTAATATTGGAGGAAGTTAAATTTTGAAAACAGAACTGTGGATGGTTTACATTAAT GAAAAATGCTAACAACTCTCACCTTAATAAGAGACTATTTTTGGGGGTCTTGGCATGATATATTTTTTAGGTTAATTCTA ACAGGTCTTCTGATCTCTGGTTTTACCTTCAAGTGATTGTCAATATCACAAAGGGGATAGTAAAAAGTGATAACTATATT ACTTATGCACAAATATACCGTTTTTAGTTAGGCTTAAATACTCTGTAGGTCCCTGAAATTGTACCCCGTATCAAAATAAG TCCCTGAAAAAATTTTTTCCGATTCCGGGTCCCTAGAAAAATTTGTTTGATCAAAATAAGTCCCTACGCCGGAGAAGACA GTGGTTGCCTTCTCATTGTTTCCACAAACCATGAAATAACATGTTTAAAACACTCCTAGACCTTCATATATCTGATCTGG GCGAAGAAATCGCAAGAAACAAAGCTAAAACGAAGAAACCGAGAAGCTCCATAAATTCCGGCGAGAAGAAATCAACTTGC GACTGGCCTTTTCTCTTCAACTGTGACGACCCAGCCCACGAGACCACCACCACTGAGTTCCTGAGGACGAGACGAAGCCG GCCCAACACCCTGGTCGTAGCGCCGCCATGACCGCCGTCGTCAGCCACCGTCTTCTCCGGCGTAGGGACTTATTCTGATT AAAAAAACAATTCCAGGGATCCGGAATCGGAAAAAAAAAATTCAGGGACTTATTTTGATACGGGGTACAATTTCAGGGAC CCCTAGAGTATTTAAGCCTTTTAGTTATTCTGCATTGGTGTTTGTTTTTACAAAGTTGAAATAGTTCGCATTGTTATTTA CTTGCTAATTGGCATTATTCTTTTGGACATGCAATACCACTACTTTTTTTTTCTTGTCTTAAACTACATCTCTTTTGCTG AGAATTCTAGTGTTAGAGACCTATAATTTGCTGATTGACTTTATTTTGCTTTTTGTCTGGGCATCAAAGGGTCTAAAGAC AGGAATGTATTATCTCCGAACACGAGCTGCAGCAGATGCTATTAAGTTCACTGTGGACACCTCTGCACTCAAAGTAATAA GAATACTTTGTGATCAATTTTTGCATTCATCTGATTTCATTTTCACATGTAGATACTAAATATTTTTGTTGTGAATGCAG GAAAAACCTAACACGGAGTGTGATGTTGACACAAAGATGGCACAAGTGGTGTGCTCTCTAACAAACCCTGAAGAGTGCTT GGCTTGTGGGAGTTAAAGTGCTCCAAAATACGCACATTTGTCTAGATTCATTTCAGGCCTAGACAAAAGCAGGGGTGAAA GTTATTTTAAGATTTGAATGCCAAATCATGTGTTAAATTTATCAAGCTTTGTACAGTACTTTAATATGTATTTGTTTACC ATTATATATGATGTTTTAGCCTTTTAGGTACTCTCATATAGTCAAAATATAGCTACATAAAAAATTGAATCCGGATAATC ATATGATCTTTAACAAAATTTAGATAATTGGATATATATTCAAAGTGTATAAGCTTTATTTTGTAAGGCCTAGTTATGGG AAAGCC
CDS sequence (LotjaGi1g1v0314100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGTGATAAAGAGAGATGGGAGGCAAGAACCGGTTCATTTCGATGCGATAACCGCACGCATCAAGAAACTCAGTTT AGGATTGAACACTGAGCACTGCGATCCCGTTTTGGTTTCTCAGAAAGTGTGTGCCGGCATCTACAAGGGTGTTACCACCA CTCAACTCGATGAATTGGCCGCTGAAACCGCCGCCGCCATGACCACCAACCACCCTGACTACGCTTCTTTGGCTGCCAAA ATCGCTGTTTCCAATTTGCACAAGAACACCAGAGAATCGTTTTCCGAGACGGTTAAGATCATGTATGATCATTTTAATGA GGAATCTGGAATGAAGGCTCCTCTAATCGCTGATGATATTTATGAAATAATCATGAAGAATGCGGTGCGATTGGACAGTG AGATCATCTATGGCAGGGACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGATCCTACCTCTTGAAGGTACAA GGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCACAAGGATGATATTGAATCGGCTGT CAAAACCTACCATTTGTTGTCTGAAAGATGGTTCACTCATGCTTCTCCGACACTTTTCAATGCAGGAACACCTAGGCCTC AACTGAGTAGTTGCTTTCTAGTGTGCATGCAAGATGATAGTATAGAGGGTATATATGAGACTTTGAAGGAGTGTGCTGTC ATCAGTAAATCAGCTGGAGGAATTGGTGTCTCTGTTCACAACATTCGTGCAACAGGAAGTTACATTGGTGGGACTAATGG GACATCCAATGGAATCGTCCCCATGTTGCGCGTGTTCAATAATACTGCCCGCTATGTTGACCAAGGGGGAGGCAAGAGGA AAGGTGCATTTGCTGTGTACTTGGAGCCATGGCATGCTGATATATTTGAGTTCCTGGATTTAAGGAAAAATCATGGAAAG GAAGAACATCGTGCTCGGGATCTGTTTTATGCTCTTTGGGTGCCTGATCTTTTTATGGAAAGAGTTCAGAAAAATGGAGA ATGGTCTTTGTTTTGCCCCAGGGAAGCACCGGGTTTGGCAGATTGCTGGGGTGAGGAATTTGAGAAGCTTTATCATCGGT ATGAAAAGGAAGGAAAAGCAAAGAAGGTTGTTCAGGCCCAGAATCTGTGGTTTGAAATATTGAAGGCACAGATAGAAACT GGAAACCCTTACATGCTTTTTAAGGATGCTTGCAATAGGAAAAGCAATCAACAGAATCTGGGTACAATAAAGTCGTCTAA CTTGTGTACTGAGATAATTCAGTATTCAAGTCCAACTGAGACGGCTGTATGCAATCTAGCATCAATTGCACTACCACAAT ATGTAAGAGAAAAGGGTGTGCCAGTGGAGTCTCATTCATCTAAGCTTATTGGGAGCACGGGCTCTGGAAATCGGTATTTT GACTTTGATAAACTAGCAGAGATTACTGCAGTAGTCACAACAAACCTGAATAAAATAATTGATGTCAATTACTACCCAGT TGAGAATGCAAAACGGTCAAACTTACGGCACAGACCCATTGGTATTGGAGTTCAGGGACTTGCTGATACATTCATGCTAC TTGGCTTGGCATTTGATTCACCAGAGGCTCAACAATTAAATAAGGAGATATTTGAGACTATATACTATCATGCTCTAAAA ACTTCATCTGATTTGGCTGTGAAAGAAGGTCCCTATGAGACATATAGTGGTAGTCCTTTAAGCAAGGGAATTCTTCAACC AGACATGTGGGGTGTGACACCCTCCAACCGTTGGGATTGGGATGCACTTCGGGAGACGATATCAAAGAAGGGTGTACGAA ATTCACTTCTGGTGGCCCCTATGCCAACTGCATCTACAAGCCAAATTCTTGGAAATAATGAGTGTTTTGAACCATACACT TCAAATATCTACAGTCGTAGAGTTTTGAGTGGTGAATTTGTTGTTGTGAACAAACATCTTCTTCACGACTTGACTGAAAT GGGATTGTGGTCTCCTACAATTAAGAATCAGATAATCTATGAAAATGGTTCGGTTCAAAATATTTCAGAAATACCTGAGG AACTGAAGGCCATATACAAAACTGTTTGGGAAATCAAACAAAAGACGTTGGTAGATATGGCTGCTGATCGAGGATGCTAC ATAGATCAGAGTCAAAGCTTGAATATTCACATGGATCAACCCAACTTTGGGAAGCTAACTTCCTTGCATTTCTATGCATG GTCCAAGGGTCTAAAGACAGGAATGTATTATCTCCGAACACGAGCTGCAGCAGATGCTATTAAGTTCACTGTGGACACCT CTGCACTCAAAGAAAAACCTAACACGGAGTGTGATGTTGACACAAAGATGGCACAAGTGGTGTGCTCTCTAACAAACCCT GAAGAGTGCTTGGCTTGTGGGAGTTAA
Protein sequence (LotjaGi1g1v0314100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYVIKRDGRQEPVHFDAITARIKKLSLGLNTEHCDPVLVSQKVCAGIYKGVTTTQLDELAAETAAAMTTNHPDYASLAAK IAVSNLHKNTRESFSETVKIMYDHFNEESGMKAPLIADDIYEIIMKNAVRLDSEIIYGRDFDYDYFGFKTLERSYLLKVQ GKVVERPQHMLMRVAVGIHKDDIESAVKTYHLLSERWFTHASPTLFNAGTPRPQLSSCFLVCMQDDSIEGIYETLKECAV ISKSAGGIGVSVHNIRATGSYIGGTNGTSNGIVPMLRVFNNTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGK EEHRARDLFYALWVPDLFMERVQKNGEWSLFCPREAPGLADCWGEEFEKLYHRYEKEGKAKKVVQAQNLWFEILKAQIET GNPYMLFKDACNRKSNQQNLGTIKSSNLCTEIIQYSSPTETAVCNLASIALPQYVREKGVPVESHSSKLIGSTGSGNRYF DFDKLAEITAVVTTNLNKIIDVNYYPVENAKRSNLRHRPIGIGVQGLADTFMLLGLAFDSPEAQQLNKEIFETIYYHALK TSSDLAVKEGPYETYSGSPLSKGILQPDMWGVTPSNRWDWDALRETISKKGVRNSLLVAPMPTASTSQILGNNECFEPYT SNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTIKNQIIYENGSVQNISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY IDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRTRAAADAIKFTVDTSALKEKPNTECDVDTKMAQVVCSLTNP EECLACGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 808 | 808 | 0.0 | ||
| PANTHER | 1 | 808 | 808 | 0.0 | – | |
| Pfam | 1 | 89 | 89 | 7.9E-15 | ||
| ProSiteProfiles | 1 | 92 | 92 | 18.622 | ||
| SUPERFAMILY | 6 | 214 | 209 | 3.27E-65 | ||
| Gene3D | 74 | 768 | 695 | 0.0 | – | |
| Pfam | 142 | 212 | 71 | 1.7E-23 | ||
| TIGRFAM | 145 | 761 | 617 | 1.7E-219 | ||
| CDD | 167 | 760 | 594 | 0.0 | – | |
| SUPERFAMILY | 215 | 770 | 556 | 1.4E-194 | – | |
| Pfam | 216 | 757 | 542 | 2.1E-192 | ||
| PRINTS | 293 | 312 | 20 | 9.1E-67 | ||
| PRINTS | 423 | 434 | 12 | 9.1E-67 | ||
| PRINTS | 480 | 503 | 24 | 9.1E-67 | ||
| PRINTS | 518 | 540 | 23 | 9.1E-67 | ||
| PRINTS | 546 | 569 | 24 | 9.1E-67 | ||
| ProSitePatterns | 600 | 622 | 23 | - | ||
| PRINTS | 611 | 638 | 28 | 9.1E-67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0314100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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