Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0364800 |
Transcript ID | LotjaGi1g1v0364800.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Endo-1,4-beta-xylanase, putative, expressed; TAIR: AT1G58370.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|I1K8B0|I1K8B0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0364800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84235234..84239576) extracted from Lotus japonicus Gifu genome v1.2.
CCAATTCAAGAGCATTGCTTATCTGCAAGATAAAGCAATAGTGAAGGAAAATTAAAAGGAAAAAAAAAACATCCTTTTTC TTAATTTCCCTCCTCTTTTTGGGATTATTTACAAGGTTCATCAATAATAATTAGTCATGAAATTCGTTCTGAGACAAAAA AAAGCCTAACAGCTTTTACACCATGAGGTTCTCGTTTATGTGTTAGGCTGGTATTGCCCCATACTTTGCCGTAGCTTTAA CTCACAAATTTGCTGAGCCATTGGGTATATATATTGAAGAGGTTATGGGTCCTCTGTTGCACAAGCACATGCAGTCTCCA ATTCTCACTTGATCTATAAGCACAAGCATCCTCAAATTAAATTATTTCATTCTCTGTAAGAAAAATGTCTTCACCATGCA TGTTTTTTCTTGTGACTTGTAGTCATGTTTATTTAATGATGAATTGATTTTTTCCCCTTCCTTATTGAAGGTCTCCTGGC TGATTCTTGTATTGGCTTACATGTCTGGTGAAACAATGGAAAACTTACAGAAGATCCATGCAGGAAACCACTCAGAGGTA TATGAGCTTCTACTACCCAATGTTCAGCAAGTTTTCTCATGCTTGCTTGTGTTTCCTTGCCTTATTTAATCTGTTATTGT GTGTTTGGATCAATCTTGTTAGAATTGATTTTGGATAGAATTGCTTGTTTAAATTGATCACAGTACAAGTGAGTTGAGAC TGAAGTAATTTATGTTTAGATACATTTATGAGAGAAGTGATTTCTATAGAATAATCTTGTGAAAGTCTGTAATAAAATTT CCAATTGATTGTGTCAATCGCAGAAGATAATCTCTCTAGCTTCTCCACATAATTGATTTTAGGACTAAAATGAATTCTCT AAGTCGATTTCAAATATCTATGTAACAACCTAAAAGTGCTTTTTGTCAAGAATTAATTCCAAGGCTCCAAAACAGGAAAC CAAATACACACTTAATATAATAGCCAAAATGAAATGAATTGTGCACCATTGCTGTATATGTGTTCTGTTTAGGTGTGAAC TTTGGGTAACATATCAAATAATAGCATTGGAAATAATAAGATTTTAGGAAAAATACCAAAGTGATCTGTCATTAAACTTG ATTCATGGTAGGATAATATGACAATATTTGATCCCTATAGTCTAATGTGGGAATAAACTTTTGTTGTAATCAAAATTGCA ATAAATGTGTCTCAGTTTCAATTTCTTTCTTTGTTTCATGAAATCTACAGACACACCAATTTTTGATACATTTTCCCCTT GTTTCAGAAGAAAACAAACACAGAATGTCTTTCCACTGATGATGAAAACATTATAATAAATCCTCAGTTTGAGGGTGGCC TGAACAGTTGGTCTGGAAGAGGCTGCAAGATTGTGTTACATGATTCCATGGGAGGTGGTAAAATACTTCCAAAAGTTGGG AAATTCTTTGTAGCTGCAACAGAACGCACGCAAACCTGGAATGGAATTCAGCAGGAGATCACCGGAAGAGTGCAGCGCAA GCTAGCATATGAGATCACTGCTTTGGTTAGGATATTTGGGAACAATGTCACTACTTCTGATGTGCGAGCTACATTGTGGG TTCAAACACCGGATCTTCGAGAGCAGTACATAGGCATTGCCAAGTAAGTGTCTATCTTATGTCTTCGGTCGTGCTATATG TTACGAAGGAAAGTTGCAAGAAATGTTGATGTGCCAAAGTTAACACAATATAGTCTTTTCCCATTTGATGAGATTGCTTG TATGAATTGAAACTCATTGTAATATCATATCATTAAGCCATGTTTATTGTCAAAGTTTTAGAATCTAAAACTTAAGAATG TTCTCTAAAAAACTGTTTTTATTGCTGAAAGAATGTTGTGCTTACTAAAGTGTGCAGGCAACAGATAAAGATTGGGTTGA AATGCAGGGAAAGTTCCTTCTCAATGGCTCCCCTTCAAAAGTTGTTCTTTATTTAGAAGGTCCCCCACCAGGAATTGACA TTCTTCTCAATACTTTGGTTGTAAAGCATGCAGCTAAAACACCACCTTCATCGCCCCCAGATTTTGAGGTTTTGCTTTCA ACATATTTTATGTTAATTGTATTGCCAATTTTGTATGTTTCAATGCCCTGAACATTGATGTTGTTTTGCAGAATGCTGCT TTTGGTGCTAACATAATTGAGAACAGTGATCTCGCTGATGGCACCAATGGCTGGTTTCCCCTTGGTAACTGCACTTTGAG TGTTGCAACTGGTTCGCCTCGTATAATTCCACCAATGGCAAGAGACTCTCTTGGCCCCCATGAGTCCTTAAGTGGACGCT ACATCCTTGTAACCAACCGCACACAAACATGGATGGGTCCTGCTCAAATGATCACTGAGAAGTTGAAACTCTTCTTAACT TATCAAGTTTCTGCTTGGGTCAGGATAAGCTCAGGATCAAGTGGGCCTCAAAATGTGGGTATTTCCCTCAGTGTTGACAA CCAGTGGGTGAATGGAGGACAAACTGAGGTTGCTGATAGCAGGTGGCATGAAATTGGTGGGTCCTTTAGACTTGAAAAAC AACCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGATCTAATGGTTGCTGGACTTCAAATTTTTCCT GTGAATAGAGAGGCAAGGTTTGCATACTTAAGGAGGCAAACAGACAAGGTAACATCTAGGTTTATTTATATTATACCTAG TTTAATTTTTCAGCATAAAGACATGGAAAGTGGAAACTTATCAAAGATGTCTTGAACTGATATAAATGAGTAATATATGG ATAACACACCTGGCCTACCAAAACTAAAGAGTGAAATCAAATATCCAAAATGTCTCGTAAACATCTATATTGCCATCCAA ACCTTGATACTCTATCATAATTGATTATGAAATCCCCAAACGGATAACCAAACACACTCTTTGACAGTTATGTCTGATCT TTTTATTATATATCCATTCTGAATTGATAGGATATGTGATAGTTTGTAAATTTTATGTTTCTAATTCCAAACATTATCAC TTGCTGCTATGCAGATTCGTAAGCGTGATGTTACTCTAAAATTCTCCGGGCTAGACTCTTGTGGGTACACCTTTGTGAAA GTTAGACAAACACAGAACGATTTTCCAATTGGATCATGCATCAACAGAACAAATATTGACAATGAAGACTTCGTTGACTT CTTTGTGAAACATTTCAACTGGGCTGTGTTTGGCAACGAGTTGAAGTGGTATTGGACTGAACCACAACAAGGAAAATTAA ACTACAAGGATGCTGATGACATGTTAGACTTGTGTCAGAAGCACAACATAGAAACTCGTGGTCATTGCATATTCTGGGAA GTGGATGGAACTGTTCAACCATGGATCAAAGCACTGAATAAAAATGATTTGATGATAGCTGTCCAAAATCGCTTAACTAG CTTATTGAATCGCTACAAAGGAAAGTTCAGACACTATGATGTCAACAATGAGATGTTGCATGGTTCATTTTATCAGGATA GACTAGGCAAAGATATCAGAGCAATCATGTTCAAAACTGCACACCAATTAGATCCATCTGCTACCCTTTTTTTGAATGAT TACCATGTTGAAGATGGAGGTGACACAAGATCATCTCCAGAAAAGTACATTCAACAAACAATTGGTCTGCAAGATCAAGG TGCCCCAGTTGGTGGAATTGGAATTCAAGGTCACATAGATAGTCCTGTTGGGCCTATTGTTTGTTCTGCACTTGACAAAT TGGGAACTCTTGGTCTTCCAATCTGGTTCACTGAGCTTGATGCGTCTTCCACTAATGAATATGTTAGAGGTGATGATCTT GAAGTTATGATGAGGGAAGCTTTTGCACACCCTGCTGTGGATGGTGTAATGCTATGGGGGTTTTGGGAATTGTTTATGAG CAGGGAAAATTCACACTTAGTGAATGCTGAAGGTGAGATCAATGAAGCTGGGAAAAGGTTCCTTGCTCTTAAACAAGAGT GGTTGTGTCACACACATGGACATATTGATGAGCAAGGAGAATTCAGTTTTAGAGGATTTAGTGGGACATATGAAGTGGAA GTTGTGACATTAGGAGAGAAAATTTGTAAGACATTTGTTGTTGACAAGGGTGAATCGTCAATTGTTGTGTCAATTGAATT ATAAGTCATGTCCAAAAAGCTTCATTCAGGAACTTGTGTTTCTTGGTTGTAATATCATTCATTCATATGGTTTTAAGGGT TTTTTTTTTTTAATGTGGTTTGCTGAAATAACAAGTTGGTGAATGGTGATGTAATTTTTATGATTTTGATGTAATGTAAT AATGCATTCATATCTGGTTTCAA
CDS sequence (LotjaGi1g1v0364800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGTGAAACAATGGAAAACTTACAGAAGATCCATGCAGGAAACCACTCAGAGAAGAAAACAAACACAGAATGTCT TTCCACTGATGATGAAAACATTATAATAAATCCTCAGTTTGAGGGTGGCCTGAACAGTTGGTCTGGAAGAGGCTGCAAGA TTGTGTTACATGATTCCATGGGAGGTGGTAAAATACTTCCAAAAGTTGGGAAATTCTTTGTAGCTGCAACAGAACGCACG CAAACCTGGAATGGAATTCAGCAGGAGATCACCGGAAGAGTGCAGCGCAAGCTAGCATATGAGATCACTGCTTTGGTTAG GATATTTGGGAACAATGTCACTACTTCTGATGTGCGAGCTACATTGTGGGTTCAAACACCGGATCTTCGAGAGCAGTACA TAGGCATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTTGAAATGCAGGGAAAGTTCCTTCTCAATGGCTCCCCTTCA AAAGTTGTTCTTTATTTAGAAGGTCCCCCACCAGGAATTGACATTCTTCTCAATACTTTGGTTGTAAAGCATGCAGCTAA AACACCACCTTCATCGCCCCCAGATTTTGAGAATGCTGCTTTTGGTGCTAACATAATTGAGAACAGTGATCTCGCTGATG GCACCAATGGCTGGTTTCCCCTTGGTAACTGCACTTTGAGTGTTGCAACTGGTTCGCCTCGTATAATTCCACCAATGGCA AGAGACTCTCTTGGCCCCCATGAGTCCTTAAGTGGACGCTACATCCTTGTAACCAACCGCACACAAACATGGATGGGTCC TGCTCAAATGATCACTGAGAAGTTGAAACTCTTCTTAACTTATCAAGTTTCTGCTTGGGTCAGGATAAGCTCAGGATCAA GTGGGCCTCAAAATGTGGGTATTTCCCTCAGTGTTGACAACCAGTGGGTGAATGGAGGACAAACTGAGGTTGCTGATAGC AGGTGGCATGAAATTGGTGGGTCCTTTAGACTTGAAAAACAACCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTC TGGTGTTGATCTAATGGTTGCTGGACTTCAAATTTTTCCTGTGAATAGAGAGGCAAGGTTTGCATACTTAAGGAGGCAAA CAGACAAGATTCGTAAGCGTGATGTTACTCTAAAATTCTCCGGGCTAGACTCTTGTGGGTACACCTTTGTGAAAGTTAGA CAAACACAGAACGATTTTCCAATTGGATCATGCATCAACAGAACAAATATTGACAATGAAGACTTCGTTGACTTCTTTGT GAAACATTTCAACTGGGCTGTGTTTGGCAACGAGTTGAAGTGGTATTGGACTGAACCACAACAAGGAAAATTAAACTACA AGGATGCTGATGACATGTTAGACTTGTGTCAGAAGCACAACATAGAAACTCGTGGTCATTGCATATTCTGGGAAGTGGAT GGAACTGTTCAACCATGGATCAAAGCACTGAATAAAAATGATTTGATGATAGCTGTCCAAAATCGCTTAACTAGCTTATT GAATCGCTACAAAGGAAAGTTCAGACACTATGATGTCAACAATGAGATGTTGCATGGTTCATTTTATCAGGATAGACTAG GCAAAGATATCAGAGCAATCATGTTCAAAACTGCACACCAATTAGATCCATCTGCTACCCTTTTTTTGAATGATTACCAT GTTGAAGATGGAGGTGACACAAGATCATCTCCAGAAAAGTACATTCAACAAACAATTGGTCTGCAAGATCAAGGTGCCCC AGTTGGTGGAATTGGAATTCAAGGTCACATAGATAGTCCTGTTGGGCCTATTGTTTGTTCTGCACTTGACAAATTGGGAA CTCTTGGTCTTCCAATCTGGTTCACTGAGCTTGATGCGTCTTCCACTAATGAATATGTTAGAGGTGATGATCTTGAAGTT ATGATGAGGGAAGCTTTTGCACACCCTGCTGTGGATGGTGTAATGCTATGGGGGTTTTGGGAATTGTTTATGAGCAGGGA AAATTCACACTTAGTGAATGCTGAAGGTGAGATCAATGAAGCTGGGAAAAGGTTCCTTGCTCTTAAACAAGAGTGGTTGT GTCACACACATGGACATATTGATGAGCAAGGAGAATTCAGTTTTAGAGGATTTAGTGGGACATATGAAGTGGAAGTTGTG ACATTAGGAGAGAAAATTTGTAAGACATTTGTTGTTGACAAGGGTGAATCGTCAATTGTTGTGTCAATTGAATTATAA
Protein sequence (LotjaGi1g1v0364800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGETMENLQKIHAGNHSEKKTNTECLSTDDENIIINPQFEGGLNSWSGRGCKIVLHDSMGGGKILPKVGKFFVAATERT QTWNGIQQEITGRVQRKLAYEITALVRIFGNNVTTSDVRATLWVQTPDLREQYIGIANVQATDKDWVEMQGKFLLNGSPS KVVLYLEGPPPGIDILLNTLVVKHAAKTPPSSPPDFENAAFGANIIENSDLADGTNGWFPLGNCTLSVATGSPRIIPPMA RDSLGPHESLSGRYILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRISSGSSGPQNVGISLSVDNQWVNGGQTEVADS RWHEIGGSFRLEKQPSKVMVYIQGPASGVDLMVAGLQIFPVNREARFAYLRRQTDKIRKRDVTLKFSGLDSCGYTFVKVR QTQNDFPIGSCINRTNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGKLNYKDADDMLDLCQKHNIETRGHCIFWEVD GTVQPWIKALNKNDLMIAVQNRLTSLLNRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRAIMFKTAHQLDPSATLFLNDYH VEDGGDTRSSPEKYIQQTIGLQDQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGLPIWFTELDASSTNEYVRGDDLEV MMREAFAHPAVDGVMLWGFWELFMSRENSHLVNAEGEINEAGKRFLALKQEWLCHTHGHIDEQGEFSFRGFSGTYEVEVV TLGEKICKTFVVDKGESSIVVSIEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 23 | 23 | - | – | |
Gene3D | 27 | 188 | 162 | 4.9E-30 | ||
SUPERFAMILY | 31 | 185 | 155 | 9.78E-35 | ||
Pfam | 33 | 169 | 137 | 3.4E-18 | ||
PANTHER | 53 | 745 | 693 | 0.0 | – | |
PANTHER | 53 | 745 | 693 | 0.0 | – | |
Gene3D | 198 | 359 | 162 | 1.4E-33 | ||
SUPERFAMILY | 202 | 362 | 161 | 2.76E-37 | ||
Pfam | 203 | 347 | 145 | 6.1E-19 | ||
ProSiteProfiles | 393 | 688 | 296 | 33.838 | ||
Gene3D | 395 | 695 | 301 | 2.1E-72 | – | |
SUPERFAMILY | 397 | 695 | 299 | 9.17E-93 | ||
Pfam | 402 | 659 | 258 | 2.5E-42 | ||
SMART | 439 | 689 | 251 | 1.6E-9 | ||
PRINTS | 470 | 482 | 13 | 5.9E-5 | ||
PRINTS | 552 | 563 | 12 | 5.9E-5 | ||
PRINTS | 584 | 596 | 13 | 5.9E-5 | ||
Coils | 671 | 691 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
Molecular function | Hydrolase activity, acting on glycosyl bonds | Catalysis of the hydrolysis of any glycosyl bond. |
Expression pattern of LotjaGi1g1v0364800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…