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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0364800 |
| Transcript ID | LotjaGi1g1v0364800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endo-1,4-beta-xylanase, putative, expressed; TAIR: AT1G58370.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|I1K8B0|I1K8B0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0364800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84235234..84239576) extracted from Lotus japonicus Gifu genome v1.2.
CCAATTCAAGAGCATTGCTTATCTGCAAGATAAAGCAATAGTGAAGGAAAATTAAAAGGAAAAAAAAAACATCCTTTTTC TTAATTTCCCTCCTCTTTTTGGGATTATTTACAAGGTTCATCAATAATAATTAGTCATGAAATTCGTTCTGAGACAAAAA AAAGCCTAACAGCTTTTACACCATGAGGTTCTCGTTTATGTGTTAGGCTGGTATTGCCCCATACTTTGCCGTAGCTTTAA CTCACAAATTTGCTGAGCCATTGGGTATATATATTGAAGAGGTTATGGGTCCTCTGTTGCACAAGCACATGCAGTCTCCA ATTCTCACTTGATCTATAAGCACAAGCATCCTCAAATTAAATTATTTCATTCTCTGTAAGAAAAATGTCTTCACCATGCA TGTTTTTTCTTGTGACTTGTAGTCATGTTTATTTAATGATGAATTGATTTTTTCCCCTTCCTTATTGAAGGTCTCCTGGC TGATTCTTGTATTGGCTTACATGTCTGGTGAAACAATGGAAAACTTACAGAAGATCCATGCAGGAAACCACTCAGAGGTA TATGAGCTTCTACTACCCAATGTTCAGCAAGTTTTCTCATGCTTGCTTGTGTTTCCTTGCCTTATTTAATCTGTTATTGT GTGTTTGGATCAATCTTGTTAGAATTGATTTTGGATAGAATTGCTTGTTTAAATTGATCACAGTACAAGTGAGTTGAGAC TGAAGTAATTTATGTTTAGATACATTTATGAGAGAAGTGATTTCTATAGAATAATCTTGTGAAAGTCTGTAATAAAATTT CCAATTGATTGTGTCAATCGCAGAAGATAATCTCTCTAGCTTCTCCACATAATTGATTTTAGGACTAAAATGAATTCTCT AAGTCGATTTCAAATATCTATGTAACAACCTAAAAGTGCTTTTTGTCAAGAATTAATTCCAAGGCTCCAAAACAGGAAAC CAAATACACACTTAATATAATAGCCAAAATGAAATGAATTGTGCACCATTGCTGTATATGTGTTCTGTTTAGGTGTGAAC TTTGGGTAACATATCAAATAATAGCATTGGAAATAATAAGATTTTAGGAAAAATACCAAAGTGATCTGTCATTAAACTTG ATTCATGGTAGGATAATATGACAATATTTGATCCCTATAGTCTAATGTGGGAATAAACTTTTGTTGTAATCAAAATTGCA ATAAATGTGTCTCAGTTTCAATTTCTTTCTTTGTTTCATGAAATCTACAGACACACCAATTTTTGATACATTTTCCCCTT GTTTCAGAAGAAAACAAACACAGAATGTCTTTCCACTGATGATGAAAACATTATAATAAATCCTCAGTTTGAGGGTGGCC TGAACAGTTGGTCTGGAAGAGGCTGCAAGATTGTGTTACATGATTCCATGGGAGGTGGTAAAATACTTCCAAAAGTTGGG AAATTCTTTGTAGCTGCAACAGAACGCACGCAAACCTGGAATGGAATTCAGCAGGAGATCACCGGAAGAGTGCAGCGCAA GCTAGCATATGAGATCACTGCTTTGGTTAGGATATTTGGGAACAATGTCACTACTTCTGATGTGCGAGCTACATTGTGGG TTCAAACACCGGATCTTCGAGAGCAGTACATAGGCATTGCCAAGTAAGTGTCTATCTTATGTCTTCGGTCGTGCTATATG TTACGAAGGAAAGTTGCAAGAAATGTTGATGTGCCAAAGTTAACACAATATAGTCTTTTCCCATTTGATGAGATTGCTTG TATGAATTGAAACTCATTGTAATATCATATCATTAAGCCATGTTTATTGTCAAAGTTTTAGAATCTAAAACTTAAGAATG TTCTCTAAAAAACTGTTTTTATTGCTGAAAGAATGTTGTGCTTACTAAAGTGTGCAGGCAACAGATAAAGATTGGGTTGA AATGCAGGGAAAGTTCCTTCTCAATGGCTCCCCTTCAAAAGTTGTTCTTTATTTAGAAGGTCCCCCACCAGGAATTGACA TTCTTCTCAATACTTTGGTTGTAAAGCATGCAGCTAAAACACCACCTTCATCGCCCCCAGATTTTGAGGTTTTGCTTTCA ACATATTTTATGTTAATTGTATTGCCAATTTTGTATGTTTCAATGCCCTGAACATTGATGTTGTTTTGCAGAATGCTGCT TTTGGTGCTAACATAATTGAGAACAGTGATCTCGCTGATGGCACCAATGGCTGGTTTCCCCTTGGTAACTGCACTTTGAG TGTTGCAACTGGTTCGCCTCGTATAATTCCACCAATGGCAAGAGACTCTCTTGGCCCCCATGAGTCCTTAAGTGGACGCT ACATCCTTGTAACCAACCGCACACAAACATGGATGGGTCCTGCTCAAATGATCACTGAGAAGTTGAAACTCTTCTTAACT TATCAAGTTTCTGCTTGGGTCAGGATAAGCTCAGGATCAAGTGGGCCTCAAAATGTGGGTATTTCCCTCAGTGTTGACAA CCAGTGGGTGAATGGAGGACAAACTGAGGTTGCTGATAGCAGGTGGCATGAAATTGGTGGGTCCTTTAGACTTGAAAAAC AACCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGATCTAATGGTTGCTGGACTTCAAATTTTTCCT GTGAATAGAGAGGCAAGGTTTGCATACTTAAGGAGGCAAACAGACAAGGTAACATCTAGGTTTATTTATATTATACCTAG TTTAATTTTTCAGCATAAAGACATGGAAAGTGGAAACTTATCAAAGATGTCTTGAACTGATATAAATGAGTAATATATGG ATAACACACCTGGCCTACCAAAACTAAAGAGTGAAATCAAATATCCAAAATGTCTCGTAAACATCTATATTGCCATCCAA ACCTTGATACTCTATCATAATTGATTATGAAATCCCCAAACGGATAACCAAACACACTCTTTGACAGTTATGTCTGATCT TTTTATTATATATCCATTCTGAATTGATAGGATATGTGATAGTTTGTAAATTTTATGTTTCTAATTCCAAACATTATCAC TTGCTGCTATGCAGATTCGTAAGCGTGATGTTACTCTAAAATTCTCCGGGCTAGACTCTTGTGGGTACACCTTTGTGAAA GTTAGACAAACACAGAACGATTTTCCAATTGGATCATGCATCAACAGAACAAATATTGACAATGAAGACTTCGTTGACTT CTTTGTGAAACATTTCAACTGGGCTGTGTTTGGCAACGAGTTGAAGTGGTATTGGACTGAACCACAACAAGGAAAATTAA ACTACAAGGATGCTGATGACATGTTAGACTTGTGTCAGAAGCACAACATAGAAACTCGTGGTCATTGCATATTCTGGGAA GTGGATGGAACTGTTCAACCATGGATCAAAGCACTGAATAAAAATGATTTGATGATAGCTGTCCAAAATCGCTTAACTAG CTTATTGAATCGCTACAAAGGAAAGTTCAGACACTATGATGTCAACAATGAGATGTTGCATGGTTCATTTTATCAGGATA GACTAGGCAAAGATATCAGAGCAATCATGTTCAAAACTGCACACCAATTAGATCCATCTGCTACCCTTTTTTTGAATGAT TACCATGTTGAAGATGGAGGTGACACAAGATCATCTCCAGAAAAGTACATTCAACAAACAATTGGTCTGCAAGATCAAGG TGCCCCAGTTGGTGGAATTGGAATTCAAGGTCACATAGATAGTCCTGTTGGGCCTATTGTTTGTTCTGCACTTGACAAAT TGGGAACTCTTGGTCTTCCAATCTGGTTCACTGAGCTTGATGCGTCTTCCACTAATGAATATGTTAGAGGTGATGATCTT GAAGTTATGATGAGGGAAGCTTTTGCACACCCTGCTGTGGATGGTGTAATGCTATGGGGGTTTTGGGAATTGTTTATGAG CAGGGAAAATTCACACTTAGTGAATGCTGAAGGTGAGATCAATGAAGCTGGGAAAAGGTTCCTTGCTCTTAAACAAGAGT GGTTGTGTCACACACATGGACATATTGATGAGCAAGGAGAATTCAGTTTTAGAGGATTTAGTGGGACATATGAAGTGGAA GTTGTGACATTAGGAGAGAAAATTTGTAAGACATTTGTTGTTGACAAGGGTGAATCGTCAATTGTTGTGTCAATTGAATT ATAAGTCATGTCCAAAAAGCTTCATTCAGGAACTTGTGTTTCTTGGTTGTAATATCATTCATTCATATGGTTTTAAGGGT TTTTTTTTTTTAATGTGGTTTGCTGAAATAACAAGTTGGTGAATGGTGATGTAATTTTTATGATTTTGATGTAATGTAAT AATGCATTCATATCTGGTTTCAA
CDS sequence (LotjaGi1g1v0364800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGTGAAACAATGGAAAACTTACAGAAGATCCATGCAGGAAACCACTCAGAGAAGAAAACAAACACAGAATGTCT TTCCACTGATGATGAAAACATTATAATAAATCCTCAGTTTGAGGGTGGCCTGAACAGTTGGTCTGGAAGAGGCTGCAAGA TTGTGTTACATGATTCCATGGGAGGTGGTAAAATACTTCCAAAAGTTGGGAAATTCTTTGTAGCTGCAACAGAACGCACG CAAACCTGGAATGGAATTCAGCAGGAGATCACCGGAAGAGTGCAGCGCAAGCTAGCATATGAGATCACTGCTTTGGTTAG GATATTTGGGAACAATGTCACTACTTCTGATGTGCGAGCTACATTGTGGGTTCAAACACCGGATCTTCGAGAGCAGTACA TAGGCATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTTGAAATGCAGGGAAAGTTCCTTCTCAATGGCTCCCCTTCA AAAGTTGTTCTTTATTTAGAAGGTCCCCCACCAGGAATTGACATTCTTCTCAATACTTTGGTTGTAAAGCATGCAGCTAA AACACCACCTTCATCGCCCCCAGATTTTGAGAATGCTGCTTTTGGTGCTAACATAATTGAGAACAGTGATCTCGCTGATG GCACCAATGGCTGGTTTCCCCTTGGTAACTGCACTTTGAGTGTTGCAACTGGTTCGCCTCGTATAATTCCACCAATGGCA AGAGACTCTCTTGGCCCCCATGAGTCCTTAAGTGGACGCTACATCCTTGTAACCAACCGCACACAAACATGGATGGGTCC TGCTCAAATGATCACTGAGAAGTTGAAACTCTTCTTAACTTATCAAGTTTCTGCTTGGGTCAGGATAAGCTCAGGATCAA GTGGGCCTCAAAATGTGGGTATTTCCCTCAGTGTTGACAACCAGTGGGTGAATGGAGGACAAACTGAGGTTGCTGATAGC AGGTGGCATGAAATTGGTGGGTCCTTTAGACTTGAAAAACAACCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTC TGGTGTTGATCTAATGGTTGCTGGACTTCAAATTTTTCCTGTGAATAGAGAGGCAAGGTTTGCATACTTAAGGAGGCAAA CAGACAAGATTCGTAAGCGTGATGTTACTCTAAAATTCTCCGGGCTAGACTCTTGTGGGTACACCTTTGTGAAAGTTAGA CAAACACAGAACGATTTTCCAATTGGATCATGCATCAACAGAACAAATATTGACAATGAAGACTTCGTTGACTTCTTTGT GAAACATTTCAACTGGGCTGTGTTTGGCAACGAGTTGAAGTGGTATTGGACTGAACCACAACAAGGAAAATTAAACTACA AGGATGCTGATGACATGTTAGACTTGTGTCAGAAGCACAACATAGAAACTCGTGGTCATTGCATATTCTGGGAAGTGGAT GGAACTGTTCAACCATGGATCAAAGCACTGAATAAAAATGATTTGATGATAGCTGTCCAAAATCGCTTAACTAGCTTATT GAATCGCTACAAAGGAAAGTTCAGACACTATGATGTCAACAATGAGATGTTGCATGGTTCATTTTATCAGGATAGACTAG GCAAAGATATCAGAGCAATCATGTTCAAAACTGCACACCAATTAGATCCATCTGCTACCCTTTTTTTGAATGATTACCAT GTTGAAGATGGAGGTGACACAAGATCATCTCCAGAAAAGTACATTCAACAAACAATTGGTCTGCAAGATCAAGGTGCCCC AGTTGGTGGAATTGGAATTCAAGGTCACATAGATAGTCCTGTTGGGCCTATTGTTTGTTCTGCACTTGACAAATTGGGAA CTCTTGGTCTTCCAATCTGGTTCACTGAGCTTGATGCGTCTTCCACTAATGAATATGTTAGAGGTGATGATCTTGAAGTT ATGATGAGGGAAGCTTTTGCACACCCTGCTGTGGATGGTGTAATGCTATGGGGGTTTTGGGAATTGTTTATGAGCAGGGA AAATTCACACTTAGTGAATGCTGAAGGTGAGATCAATGAAGCTGGGAAAAGGTTCCTTGCTCTTAAACAAGAGTGGTTGT GTCACACACATGGACATATTGATGAGCAAGGAGAATTCAGTTTTAGAGGATTTAGTGGGACATATGAAGTGGAAGTTGTG ACATTAGGAGAGAAAATTTGTAAGACATTTGTTGTTGACAAGGGTGAATCGTCAATTGTTGTGTCAATTGAATTATAA
Protein sequence (LotjaGi1g1v0364800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGETMENLQKIHAGNHSEKKTNTECLSTDDENIIINPQFEGGLNSWSGRGCKIVLHDSMGGGKILPKVGKFFVAATERT QTWNGIQQEITGRVQRKLAYEITALVRIFGNNVTTSDVRATLWVQTPDLREQYIGIANVQATDKDWVEMQGKFLLNGSPS KVVLYLEGPPPGIDILLNTLVVKHAAKTPPSSPPDFENAAFGANIIENSDLADGTNGWFPLGNCTLSVATGSPRIIPPMA RDSLGPHESLSGRYILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRISSGSSGPQNVGISLSVDNQWVNGGQTEVADS RWHEIGGSFRLEKQPSKVMVYIQGPASGVDLMVAGLQIFPVNREARFAYLRRQTDKIRKRDVTLKFSGLDSCGYTFVKVR QTQNDFPIGSCINRTNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGKLNYKDADDMLDLCQKHNIETRGHCIFWEVD GTVQPWIKALNKNDLMIAVQNRLTSLLNRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRAIMFKTAHQLDPSATLFLNDYH VEDGGDTRSSPEKYIQQTIGLQDQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGLPIWFTELDASSTNEYVRGDDLEV MMREAFAHPAVDGVMLWGFWELFMSRENSHLVNAEGEINEAGKRFLALKQEWLCHTHGHIDEQGEFSFRGFSGTYEVEVV TLGEKICKTFVVDKGESSIVVSIEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| Gene3D | 27 | 188 | 162 | 4.9E-30 | ||
| SUPERFAMILY | 31 | 185 | 155 | 9.78E-35 | ||
| Pfam | 33 | 169 | 137 | 3.4E-18 | ||
| PANTHER | 53 | 745 | 693 | 0.0 | – | |
| PANTHER | 53 | 745 | 693 | 0.0 | – | |
| Gene3D | 198 | 359 | 162 | 1.4E-33 | ||
| SUPERFAMILY | 202 | 362 | 161 | 2.76E-37 | ||
| Pfam | 203 | 347 | 145 | 6.1E-19 | ||
| ProSiteProfiles | 393 | 688 | 296 | 33.838 | ||
| Gene3D | 395 | 695 | 301 | 2.1E-72 | – | |
| SUPERFAMILY | 397 | 695 | 299 | 9.17E-93 | ||
| Pfam | 402 | 659 | 258 | 2.5E-42 | ||
| SMART | 439 | 689 | 251 | 1.6E-9 | ||
| PRINTS | 470 | 482 | 13 | 5.9E-5 | ||
| PRINTS | 552 | 563 | 12 | 5.9E-5 | ||
| PRINTS | 584 | 596 | 13 | 5.9E-5 | ||
| Coils | 671 | 691 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Hydrolase activity, acting on glycosyl bonds | Catalysis of the hydrolysis of any glycosyl bond. |
Expression pattern of LotjaGi1g1v0364800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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