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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001000
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 24 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.434s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0167789.1
n.a. Endo-1,4-beta-xylanase C [Medicago truncatula] gi|357503165|ref|XP_003621871.1| chr0 79878507 79882277 +
4 domain predictions
2 GO terms
Lj0g3v0316669.1
n.a. PREDICTED: endo-1,4-beta-xylanase A-like [Glycine max] gi|356554054|ref|XP_003545364.1| chr0 165429177 165437055 +
4 domain predictions
2 GO terms
Lj0g3v0316669.2
n.a. PREDICTED: endo-1,4-beta-xylanase A-like [Glycine max] gi|356554054|ref|XP_003545364.1| chr0 165431210 165437055 +
4 domain predictions
2 GO terms
Lj1g3v1784210.1
n.a. PREDICTED: exoglucanase XynX-like isoform X1 [Cicer arietinum] gi|502132694|ref|XP_004501484.1| chr1 20686393 20690337 -
5 domain predictions
2 GO terms
Lj1g3v1784210.2
n.a. PREDICTED: exoglucanase XynX-like isoform X1 [Cicer arietinum] gi|502132694|ref|XP_004501484.1| chr1 20686393 20690337 -
5 domain predictions
2 GO terms
Lj1g3v3343780.1
n.a. PREDICTED: exoglucanase xynX-like [Glycine max] gi|356509525|ref|XP_003523498.1| chr1 38282542 38287431 +
5 domain predictions
2 GO terms
Lj3g3v3500160.1
n.a. Endo-1,4-beta-xylanase C [Medicago truncatula] gi|357503165|ref|XP_003621871.1| chr3 42547779 42550127 +
4 domain predictions
2 GO terms
Lj3g3v3500170.1
n.a. PREDICTED: endo-1,4-beta-xylanase Z-like [Glycine max] gi|356541019|ref|XP_003538981.1| chr3 42554413 42557739 +
4 domain predictions
2 GO terms
Lj5g3v2099500.1
n.a. PREDICTED: endo-1,4-beta-xylanase A-like [Cicer arietinum] gi|502120176|ref|XP_004496873.1| chr5 30014449 30023313 -
4 domain predictions
2 GO terms
Lj5g3v2099500.2
n.a. Endo-1,4-beta-xylanase A [Medicago truncatula] gi|357444483|ref|XP_003592519.1| chr5 30019686 30023313 -
4 domain predictions
2 GO terms
LotjaGi1g1v0364800.1
n.a. Endo-1,4-beta-xylanase, putative, expressed; TAIR: AT1G58370.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|I1K8B0|I1K8B0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0364800 LjG1.1_chr1 84235234 84239576 -
5 domain predictions
2 GO terms
LotjaGi1g1v0364800.2
n.a. Endo-1,4-beta-xylanase, putative, expressed; TAIR: AT1G58370.2 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|I1K8B0|I1K8B0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0364800 LjG1.1_chr1 84235413 84238452 -
5 domain predictions
2 GO terms
LotjaGi1g1v0559800.1
n.a. Endo-1,4-beta-xylanase; TAIR: AT4G38650.1 Glycosyl hydrolase family 10 protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|A0A0B2QJS4|A0A0B2QJS4_GLYSO Endo-1,4-beta-xylanase A; Found in the gene: LotjaGi1g1v0559800 LjG1.1_chr1 109230588 109235741 +
5 domain predictions
2 GO terms
LotjaGi1g1v0559800.2
n.a. Endo-1,4-beta-xylanase; TAIR: AT4G38650.1 Glycosyl hydrolase family 10 protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|A0A0B2QJS4|A0A0B2QJS4_GLYSO Endo-1,4-beta-xylanase A; Found in the gene: LotjaGi1g1v0559800 LjG1.1_chr1 109230870 109235816 +
5 domain predictions
2 GO terms
LotjaGi3g1v0524400.1
n.a. Endo-1,4-beta-xylanase; TAIR: AT4G33840.1 Glycosyl hydrolase family 10 protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|A0A072UFN4|A0A072UFN4_MEDTR Glycosyl hydrolase family 10 protein; Found in the gene: LotjaGi3g1v0524400 LjG1.1_chr3 94131165 94134606 +
4 domain predictions
2 GO terms
LotjaGi5g1v0039300.1
n.a. Endo-1,4-beta-xylanase A; TAIR: AT1G58370.2 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|K7M5U1|K7M5U1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039300 LjG1.1_chr5 6648458 6656644 -
4 domain predictions
2 GO terms
LotjaGi5g1v0039300.2
n.a. Endo-1,4-beta-xylanase A; TAIR: AT1G58370.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|K7M5U2|K7M5U2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039300 LjG1.1_chr5 6648735 6654663 -
5 domain predictions
2 GO terms
LotjaGi5g1v0039300.3
n.a. Endo-1,4-beta-xylanase A; TAIR: AT1G58370.2 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|K7M5U1|K7M5U1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039300 LjG1.1_chr5 6648735 6656408 -
4 domain predictions
2 GO terms
LotjaGi5g1v0039300.4
n.a. Endo-1,4-beta-xylanase, putative, expressed; TAIR: AT1G58370.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|A0A0S3RPM8|A0A0S3RPM8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039300 LjG1.1_chr5 6648960 6653309 -
5 domain predictions
2 GO terms
LotjaGi5g1v0039300.5
n.a. Endo-1,4-beta-xylanase A; TAIR: AT1G58370.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|K7M5U2|K7M5U2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039300 LjG1.1_chr5 6648960 6653895 -
5 domain predictions
2 GO terms
LotjaGi5g1v0039300.6
n.a. Endo-1,4-beta-xylanase A; TAIR: AT1G58370.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|K7M5U2|K7M5U2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039300 LjG1.1_chr5 6648960 6654023 -
5 domain predictions
2 GO terms
LotjaGi5g1v0039300.7
n.a. Endo-1,4-beta-xylanase A; TAIR: AT1G58370.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|K7M5U1|K7M5U1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039300 LjG1.1_chr5 6648960 6654079 -
4 domain predictions
2 GO terms
LotjaGi5g1v0322000.1
n.a. Endo-1,4-beta-xylanase; TAIR: AT2G14690.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|G7IEW9|G7IEW9_MEDTR Glycosyl hydrolase family 10 protein; Found in the gene: LotjaGi5g1v0322000 LjG1.1_chr5 64072686 64075459 -
4 domain predictions
2 GO terms
LotjaGi5g1v0322100.1
n.a. Endo-1,4-beta-xylanase; TAIR: AT4G33840.1 Glycosyl hydrolase family 10 protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|G7IEW9|G7IEW9_MEDTR Glycosyl hydrolase family 10 protein; Found in the gene: LotjaGi5g1v0322100 LjG1.1_chr5 64079264 64083154 -
4 domain predictions
2 GO terms