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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0420200 |
| Transcript ID | LotjaGi1g1v0420200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT2G34260.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O80775|WDR55_ARATH WD repeat-containing protein 55; TrEMBL-Plants: tr|I3STW3|I3STW3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0420200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91371102..91378426) extracted from Lotus japonicus Gifu genome v1.2.
CCCCCCAAATTCAGAATTTGAACCCTAATTCCACTGTTGACCAAAAAAAAAAACCCTAATTCCACTCAATCTCACTCAAT ATCTTTCATCTTCACTACTCCCATAGCTGCTGCCCAACCACCTCCGACCACCGGCGAGCACTCCGGTCTCCGGCCACCGC GTTTCTGCTCTGATCAAGCTCTCAGGTACTGTTTTCTTAGCTTCCCCATAATTGTCCTCTGTTTTCACGCCCCTATCATC TCCCAAAGGCTTATGTCTTTTCTCTTAAACCCCTGTTCCTCTGTTTAAAGACTTAAGTCTCTGTTTTCTTTCTCCTGTTT AGTGCTGGTGGGTGTTACTCTTTATACTTCATTTGCAATGTCAATTAAAGTCTTGAATTTGTCTTGATGTTTTGGTATGT AAAATGTTCGATGAGACTTAATATCTATCTATTGAACTTTTGTATGAGACTTTTGGTATTATATATTGAGCCTATATTTG ATGATATAAGTTGTTAGTTAGCAGAATTTTTATCTGTTGTATATTGTATTATGTAGGTTTTTCCATGTGTATGTATCGTT GTATGCATATGTATATATATTATAGATATATATAATTTTAATATTTTTTATTAAGGCTGCCATGGCATCCGCCTTAATTC TATGGCGGTATTTTGGCTTTCTGCCGTGACCCACCTTGATAACACTGGGGGAGGTCAATGCAACTTGCCTTGGTGTTTTC AGCATTTACAGTACCCTTCACCTTGAGGACAAGGTGACTATTTAGGGGGGAGTACTATTGATAGGTTACTCTTAGTGAGA GTTAGTTTGTGCAATATTTAAGTAGTTAAGGAGTTGGCTAGAGAGTGAGAGATATGATGAGGTTATAAGTACCAGAAAGA GGAGATTAGAGGGTTATGTCTTGGAAATTTGAAGGAAACTGGGAGAGTTCCATGTCTCTTGTGTCCCTGGTGTAATAGAG TTTGTACCAATAATTTGTCAAAAAAAAAGAGTTTGTAACAATAAAACTGTTCTTCTATATTCTTTACATCTCCGGGTTCT GTAGAAAGAGGTTTGGATGTATTCCATTGAACTACTGCTTTTCTTCCCAATTTGTTTGACCCTTCTCTAATATTCTCTTC TTCTGTGGTCTGCTAAACAGCAATGGAAATAAATTTGGGGAAGCTCGGTTTTGACATCGATTTTCATCCATCAGATAATC TTGTGGCTGCAGGACTGATCAGTGGTGACTTTCATATGTAAGTTGCTCTGGAGCTATGGTTTCCATATCTAACCAACATG TTTTTTATAACTTAGTTATTATTATTATTATTTTGTATTTATGGTAATGATTGTAATGACTAATGAATCATGTGTCCTAC AGATACCGTTATAGCTCTGATAGCAATGATAATGACCCCGTGAGGTATAAATTCTAACTTTCCGCTTGGTACTCAACCCA CATGAATATTGCCTTTACATTAACAATTCATCATTATATATTTATACTTTTGTTATGTAATCCATACTTTGCAATCTTTT TTTTTTAATTCCAGGCTGTTGGAAGTTCATGCTCACACCGAGTCTTGCAGAGCTGCTCGATTCATCAATGGTGGACGTGG TAATGCACAATATAGTTTTTAATACTTTTTTCTTTTTTATGATTTTAACTAAATTTTATGGACAGTTTTATTTTGATGAT TTTGATTTTTAAATGCTTACTATGATGTTTGGTTATTAGTGCTGTTGACGGGTTCTCCGGATTGCTCAATACTGGCTACA GATGTGGAAACTGGATCTACCATCACCCGTATTGATAATGCCCATGAGTGAGTATATATGCTGCTATTGCTCATTTTCAT AATTTGGCTTACTGGATCGCTTGTGTGCTCATTGGTTTAGAACTTTCATGTGGTGTTTTGTTCTGATACAGGGCTGCAAT CAATAGATTGATTAACTTGACTGAGTCAACTGTTGCTTCAGGAGATGATGAAGGTTGTATTAAGGTAACTTTGCTAGTTT TATTTCATGTTTATTCCATTTACATGTGCTATTCTAGAGTATTTTGCACAGTGCACTGATAATATATGATGTAGATGTTC ACTTTTATGTTAGTTCTAAGCAGTAAATTTCCATTTTTAAACTTTCAACCTTTGCCCAGCTTATAAATTAAACTTGATTA GGCATTCTCAACATGTTTGCTTGTTTTATAATTCTACCAAGCACAAAAAATAAGTGTGCCTAGCCATCAAATATTTGGAC CATAGGGGGCCCAATGTCTTTCTAGTTAATGCAATCTTCCATCTATAATTCCTTTCTTTCTATGTTTGCCTGTTCTGTTT TTATCACACTATGCATATAGGAAAAGTGCACATAGTAGGTGGTCTCACATACAATTGCTTATGTTTTCAACACTTGCTGC AAGTAGCAACTAATGGCCTTTCTTCTGGACATTCCTTTTTTTCAATATTATGTCATTTTTCCTTTTTTCTTAATACTATT TCTTCTCTGTTATTACTGTTATGCCACTTTTTCACTGATTTCCTTCTTCTTAAAGCCACCTGTTACCTGAAGATGGTTAA AGTTGATGTCTTAGAGTTATGGAAAGGATTAGATAGTCAACATTTTCTCAGATCTTTTCATATAGTGTATCCTTCTTGTA GGTTTGGGATATCAGAGAACAGTCTTGCTGCAATTCATTTGATGTCCATGAAGATTACATTTCAGACATGACATTTGCAT CTGATGCAATGAAACTATTGGCAACAAGGTAGCGAAGCCAGTAACTTTACTTCACCTACCCAAAACTATGAATGAATAGA AAAAATTACCCTTGTTGGCATGAGGTACTGGTTGTAAAGATCTTTTTGAACTTTTTGGTGAAAAGGGATTCCATATTTAT TTATAATTTCGAAAATTTCATGTTGGTGTCCCCTTACAGATTCAGAGTTGCATTTTAAAAGAAACCACAATTGCCAAATA ATCGTATCTTTAAATTCTAATAGCAACTTTTTGCCTTTCAAGTTATTTTCATATTATTTTAGCTAAATAGAAAATAAAAA ATCTCATCGCCAATTGTAACTGCTGTAGAAATAAGGTTATGTTCTATAATTATACTGGTTGACTAACTGACAGCTGGTCT AGCTGAAATTTTATTGGCATAATTTGGTAGGGCATTACAAATAAATTTGTTTATTTTTTATTTGAATAATTCAGTGATTA GTATTAGGCATTAGCAGGGCCAAAGGCAGTGATCAAACATTTTGCTCATAGCAAGTACTGAATTAAAGCATAACCTAGCT ATGTTCCAATCTTTTTTGTTATTTCCCCCCTTACAGTAGTCACCTTGGAGCTGACAATCACCATTTTCAGATTTCTAGTA GTGCTTTTTTTAATATGCTTCATGAATAACAATGTTTTTAATACTGTACTTTCACCGGCTTATCAATGTAGTCTAAATTC TCTGTTTTTTTAAATTTCCTTTTGTTGTTAAGTGGAGATGGGACTCTGTCTGTTTGCAATCTCCGGAGAAATAAAGTAAG TTGTATGTCCATGTTTTCTAGTTCCTTTTGAAACATCGATGTACTTTATCAGCAACTGTATTTCGACCACCTTTTCCTGA TTTGTTGACAGGTCCAAGCTCAGTCTGAATTTTCTGAAGATGAGCTATTGTCTGTTGTTTTAATGAAGGTATGAACTTAT ATGCTTTTGTACGATTATTTTACATGTTTCTTTGAAAAAGAACTATTAAAAAGGAACTTCATTTATAATTGTTTCTTGTG CTTTTGTTCTTGCTGCCATGGACTAATTATTTTTTTGCTTTTTATTAACACTCTGTTTTTTATTTTTCACTTATAAAGTG CTTCTTACTTTGGCCAAATACCTAAGATTGAAGAATTTTTTTTAGACTAAAAACAAGTATTGGTTTGACAGCATGACCAA ACATGCAATTAGTTACTTTTGTACTGGTAGATGCACTGTTTTTTTGCACATTTATCATCTTCGAAAATATGCACATGGCT GATGCTCACATTTTTTGTATGAGTGATCAGAATGGTAGGAAAGTTGTATGTGGATCACAAACTGGAATCATTCTATTGTA CTCTTGGGGATGCTTCAAGGATTGTAGGTACATGATATGGAATATTTCATGATTCTATGATAGAAGTGTTTCTATTTATG GAGGAGAGACATCAATTGGATGTTCTCTTTCTATTTTATTTCTTATTCTACCTCTTTGACTTATGTTCTTTCTAATGGTT CAACTGCAGCGATCGATTTGTTGATCTCTCTTCAAACTCTCTTGATACTATGGTAAAGGTGAGTGGATAGTAGCATAATA TAATTACTTTAGGAATTTGTATGTTTTTTTCCCATCCCTGTTATTTTAATACTTTTATTTTATTTTATTTTAGCTTGATG AAGATAGGATTATTACTGGATCAGAGAATGGGATGATCAAGTGAGTTTTTAGCGGTTTGAGACTTTGAGAGCATTGTACC TCTTGTTCGAATCATATATCAATCTTTTATTTCTTCTGTTCTCAGTTTCATTTACATATATGATTTTTTTTTGTTCAGCT TGGTTGGGATATTACCAAACAGAATCATCCAGCCCATTGCAGAGCATTCTGAATATCCTGTTGAGCGTCTTGGTAACATA CTGTCACTCTTTTCTCATCATTTGATGTGAAATTGTTCTTTTTTTTTTTTGGTCAATATGTGAAATTGTTCTAAGCATCA AATCCTTTGCTGTTAGTTTGTTGTTTTCCTATCGCTGTTCATTTGCTAAGCGGAGATGGATTTTGGTGTTCATTTTTTAT TCTTACTGTTTTCAGCCGCACTATTGTATGTTCATGCACAAGCATATATCTTTGTGTTCATGGTTTTTCTTGTTTGTGGT TGAGTAAGTTTGACTTGATAATTTTCTTTGGTCTTGTAGCATTCTCTCATGACAGAAAGTTCCTTGGAAGTATTGCACAC GATCAATTGTTAAAGGTACTTATCTTTGTTAATTTCCAAAGATTGCTTGGAAAGGTTTCTTCTGCTCCATTAGTTTTTGC TCACGACTCGTTATCATGATAACTCTAAACCCCTATCTGGTCATTTTATTGGGGCTTCACAACTTTGTTTTATAGAAAGA TTGCCTTAACTACAGATGACTCAGAGTGGTTAGGAATTTCATTTTTTAGTAGAATTAAATAATTTGCTCCAAACTGCTCC TATTGGATTGCATGGTTTATCAATATTACTTAAAATGTCAAGACGTGTCTTCTTAATTGGATGGGCATTTGCGAGTTGCA ACTGAAAAGGGAGAAATGATGTTATGCAATAGCATACACGAGTCACTGAATTTTGTGCTTAGTGTGATGGGTGATATCTA TGGTAATTATGGCATTACTTATAATTTGGTGCTTTACAAATGCTGAACACAACACCGACTAAAGATAGGAATATAAACTT AGAGATGTCAGCTATGGCAGTATTATTTTAGACACTTTTGGTTTGCAATGACCTTTAAAAGAAAAATAAAGAGCATGCAT TTTAACATACTGGTTGGATGAGTTTGTAACAGTTTGTGGCATAAAATTTTGCTTGTCAATCAATTAAAATGTATGCATGC ACGCGGGTGTTTGTGTTTTATTTTTTTTTGTACATATTATATGATAGTGGCTGATAATTGAATGATCACGTCAGAGGCGC ATAAACACCCTAGCTAAGTGATAGAGGAGAGAGGGAGGGAAGTTAAGGGTAGGAAAATTTGGATTGGACTATTGGAGTAG GGAGGGTTCATGTTCTCGAATACCTGAGGAATAGGAGTTTGTGTTTCATCTTCTACCTCTATCACACTGATCAGGGGGGA TTTTCTGAATAGTACACGTCTCTTGCTTTCTTTTGTTATCATTTCCTTTTTCTTCTCAGTTACTAGTTAGAACCTATCAT AATACTGATAAATTAGTTGCCTGAATATGCATTAATTTTTTTCTTTCTGTGCAGCTATGGGACTTGGATAATATACTCCA AGATTCAAGAAGCACACAGAGAAATGAAACTGGAGTAATTGACAATGACAATGATGAGATGGATGAAGATGATGATCCTT CAAAGTTCAGTGAAGGTAGGATATGATTTACATAGATAGATGTAAATGTCATAGAATTCTAATCGCTAACTACATGGGAT GGTTATTTGATACCTTTGCAGGGAACAAGAGAAAGGATGCAAACAATGGATCAAACAACTTCTTTGCAGATTTATAGGAG ATTGTGGATGCAACTTAGTTCAAATGCGATAACTCAATTAGGACACTTGCATGCGTGATTTCCAAATTCCCCTTCTCAAA ATTGATAGTTTTTCAGGACCCTGTCCTAGAGATAGCTTTTTGGTTTGTGATCCTCGTGTCGCTTGTAATTCTTTTTCCCA ATATATATAAAGAAATTGTGAGGAGTTGGATACTCTTGATATAAGCTATAGTGGTGATTACAATTAAGTTATGAAATATA AGAGCAACTCCAACGCTGGTTTCTTAACCAGGTTGGAGTTGCTAAGAAACCAAGGGCCAGTTTCTTACCCATTGGAGCAG GGTTCCTTAAGGTTCCTTAGCTAAGGAAAAGTGGGCAGAGTTGCTTCTGCAAGCAACTCTGCTTTATCAGTTTCTTAATT AAAATAACATACTTTCTCTCACATTCACTTCCAACAGATTTCAGAGGGAAGAAATAGTAGAAACAGATTGCATGAACTAC CTACAATTTTATTCAAACAATAAAAATAGAAAATAATTACAAAGCTTCAGAAGATTAAATTTTTACAAAGAAAAATGAAA AAAAAAAATTACAGAAGCTGAAGGGTGTAAAGGAAAGCTTGATCCGGTTGTTTTTCTCCGATCTGGTGGCGGTGGCGGAG GGTGGAAGGCCTGCATGTCTCCGATCCAGTGCTTGAGGGGCGATTTGGGTCCGGATTGAAGCTTTGATGGCGGCTGGGGT AAGTTTTGGTTGCGGTGGTGGGTGTTTGGTGGCGATGAGGAGACGGTGAGGCGGGTTTGGTGGCGGTGAAGGTTGTTTGG TGGCGGGTGAGTGGCGGTGAGGTGGTTTTGGTTGTGGTTGTGGGTGTTTGGTGGCGGAGAGGTGGGTTTTGTTTGAGGTT GTGGGTGTTTGGTGGCGGTGAGGAGGCGGTGAGGTGGCGGGTCGAAGGAGGTGAGGAGTTGGCTGTGAGGAAGAAGAGAA GAGGAAGAAGAAAAGAAGAGCAGAGGAAGAGCAGAGGAAGAAGAAAAGAAGAGCAGAGGAAGAAGAAAGGGGAAACGGCT AGGGTTAATGAGGGAGGGAGTGATAAGGGAGTATTTATAGTGGAT
CDS sequence (LotjaGi1g1v0420200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATAAATTTGGGGAAGCTCGGTTTTGACATCGATTTTCATCCATCAGATAATCTTGTGGCTGCAGGACTGATCAG TGGTGACTTTCATATATACCGTTATAGCTCTGATAGCAATGATAATGACCCCGTGAGGCTGTTGGAAGTTCATGCTCACA CCGAGTCTTGCAGAGCTGCTCGATTCATCAATGGTGGACGTGTGCTGTTGACGGGTTCTCCGGATTGCTCAATACTGGCT ACAGATGTGGAAACTGGATCTACCATCACCCGTATTGATAATGCCCATGAGGCTGCAATCAATAGATTGATTAACTTGAC TGAGTCAACTGTTGCTTCAGGAGATGATGAAGGTTGTATTAAGGTTTGGGATATCAGAGAACAGTCTTGCTGCAATTCAT TTGATGTCCATGAAGATTACATTTCAGACATGACATTTGCATCTGATGCAATGAAACTATTGGCAACAAGTGGAGATGGG ACTCTGTCTGTTTGCAATCTCCGGAGAAATAAAGTCCAAGCTCAGTCTGAATTTTCTGAAGATGAGCTATTGTCTGTTGT TTTAATGAAGAATGGTAGGAAAGTTGTATGTGGATCACAAACTGGAATCATTCTATTGTACTCTTGGGGATGCTTCAAGG ATTGTAGCGATCGATTTGTTGATCTCTCTTCAAACTCTCTTGATACTATGGTAAAGCTTGATGAAGATAGGATTATTACT GGATCAGAGAATGGGATGATCAACTTGGTTGGGATATTACCAAACAGAATCATCCAGCCCATTGCAGAGCATTCTGAATA TCCTGTTGAGCGTCTTGCATTCTCTCATGACAGAAAGTTCCTTGGAAGTATTGCACACGATCAATTGTTAAAGCTATGGG ACTTGGATAATATACTCCAAGATTCAAGAAGCACACAGAGAAATGAAACTGGAGTAATTGACAATGACAATGATGAGATG GATGAAGATGATGATCCTTCAAAGTTCAGTGAAGGGAACAAGAGAAAGGATGCAAACAATGGATCAAACAACTTCTTTGC AGATTTATAG
Protein sequence (LotjaGi1g1v0420200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEINLGKLGFDIDFHPSDNLVAAGLISGDFHIYRYSSDSNDNDPVRLLEVHAHTESCRAARFINGGRVLLTGSPDCSILA TDVETGSTITRIDNAHEAAINRLINLTESTVASGDDEGCIKVWDIREQSCCNSFDVHEDYISDMTFASDAMKLLATSGDG TLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGIILLYSWGCFKDCSDRFVDLSSNSLDTMVKLDEDRIIT GSENGMINLVGILPNRIIQPIAEHSEYPVERLAFSHDRKFLGSIAHDQLLKLWDLDNILQDSRSTQRNETGVIDNDNDEM DEDDDPSKFSEGNKRKDANNGSNNFFADL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 349 | 349 | 1.4E-118 | ||
| PANTHER | 2 | 340 | 339 | 2.1E-139 | – | |
| PANTHER | 2 | 340 | 339 | 2.1E-139 | – | |
| Gene3D | 7 | 216 | 210 | 5.3E-31 | ||
| SUPERFAMILY | 11 | 297 | 287 | 4.21E-43 | ||
| SMART | 43 | 82 | 40 | 0.36 | ||
| ProSiteProfiles | 50 | 303 | 254 | 19.907 | ||
| SMART | 85 | 124 | 40 | 0.4 | ||
| SMART | 127 | 166 | 40 | 0.0049 | ||
| SMART | 169 | 208 | 40 | 16.0 | ||
| Gene3D | 217 | 321 | 105 | 7.7E-8 | ||
| SMART | 254 | 294 | 41 | 0.058 | ||
| Pfam | 263 | 294 | 32 | 0.21 | ||
| ProSitePatterns | 281 | 295 | 15 | - | ||
| MobiDBLite | 304 | 349 | 46 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0420200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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