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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019775
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 505 results. Now displaying 1 of 11 with 50 rows per page. This search has taken 7.141s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v1697430.1
LjCerebrus RecName: Full=Putative E3 ubiquitin-protein ligase LIN-1; AltName: Full=Protein cerberus] gi|353558931|sp|C6L7U1.2|LIN1_LOTJA chr5 24288104 24296633 +
2 domain predictions
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Lj0g3v0006089.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 48-like [Cicer arietinum] gi|502165775|ref|XP_004513686.1| chr0 2290103 2296009 -
2 domain predictions
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Lj0g3v0012509.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Glycine max] gi|356533257|ref|XP_003535182.1| chr0 4734729 4738854 +
2 domain predictions
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Lj0g3v0039969.1
n.a. PREDICTED: protein transport protein SEC31-like isoform 2 [Glycine max] gi|356531635|ref|XP_003534382.1| chr0 12974186 12979269 +
2 domain predictions
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Lj0g3v0041649.1
n.a. PREDICTED: WD repeat-containing protein 76-like [Glycine max] gi|356548457|ref|XP_003542618.1| chr0 13720738 13723664 -
2 domain predictions
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Lj0g3v0046679.1
n.a. Vascular protein [Medicago truncatula] gi|358345857|ref|XP_003636991.1| chr0 15476410 15479674 +
2 domain predictions
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Lj0g3v0060299.1
n.a. Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] gi|87162556|gb|ABD28351.1| chr0 20048466 20053713 -
2 domain predictions
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Lj0g3v0060309.1
n.a. Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] gi|87162556|gb|ABD28351.1| chr0 20060674 20069782 -
2 domain predictions
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Lj0g3v0069329.1
n.a. PREDICTED: WD repeat-containing protein 44-like [Cicer arietinum] gi|502136437|ref|XP_004502686.1| chr0 25001361 25006580 -
2 domain predictions
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Lj0g3v0069329.2
n.a. PREDICTED: WD repeat-containing protein 44-like [Cicer arietinum] gi|502136437|ref|XP_004502686.1| chr0 25001361 25006580 -
2 domain predictions
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Lj0g3v0069539.2
n.a. PREDICTED: WD repeat-containing protein 25-like [Cicer arietinum] gi|502155265|ref|XP_004510012.1| chr0 25149280 25154621 +
2 domain predictions
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Lj0g3v0069539.3
n.a. PREDICTED: WD repeat-containing protein 25-like [Cicer arietinum] gi|502155265|ref|XP_004510012.1| chr0 25149280 25154621 +
2 domain predictions
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Lj0g3v0096189.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Cicer arietinum] gi|502122681|ref|XP_004497861.1| chr0 40546100 40547621 +
2 domain predictions
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Lj0g3v0101969.1
n.a. PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Cicer arietinum] gi|502081240|ref|XP_004486807.1| chr0 43286011 43294414 -
2 domain predictions
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Lj0g3v0101969.2
n.a. PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Cicer arietinum] gi|502081240|ref|XP_004486807.1| chr0 43286011 43293409 -
2 domain predictions
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Lj0g3v0109259.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] gi|356552535|ref|XP_003544622.1| chr0 47277284 47286300 -
2 domain predictions
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Lj0g3v0109259.2
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] gi|356552537|ref|XP_003544623.1| chr0 47277284 47286300 -
2 domain predictions
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Lj0g3v0112299.1
n.a. PREDICTED: serine-threonine kinase receptor-associated protein-like [Cicer arietinum] gi|502174785|ref|XP_004515599.1| chr0 48844914 48853229 -
2 domain predictions
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Lj0g3v0114209.1
n.a. PREDICTED: E3 ubiquitin-protein ligase COP1-like [Glycine max] gi|356554527|ref|XP_003545597.1| chr0 50026700 50038584 +
2 domain predictions
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Lj0g3v0173139.1
n.a. Pre-mRNA-processing factor [Medicago truncatula] gi|357440851|ref|XP_003590703.1| chr0 83225021 83228730 -
2 domain predictions
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Lj0g3v0174599.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] gi|356534740|ref|XP_003535910.1| chr0 84232134 84248401 +
2 domain predictions
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Lj0g3v0174599.2
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform X6 [Cicer arietinum] gi|502183143|ref|XP_004517072.1| chr0 84232134 84248401 +
2 domain predictions
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Lj0g3v0174599.3
n.a. PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] gi|356534740|ref|XP_003535910.1| chr0 84232134 84248401 +
2 domain predictions
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Lj0g3v0174599.4
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform X6 [Cicer arietinum] gi|502183143|ref|XP_004517072.1| chr0 84232134 84248401 +
2 domain predictions
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Lj0g3v0201979.1
n.a. PREDICTED: angio-associated migratory cell protein-like [Glycine max] gi|356576129|ref|XP_003556186.1| chr0 99940166 99944107 -
2 domain predictions
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Lj0g3v0230879.1
n.a. PREDICTED: WD repeat-containing protein 18-like [Glycine max] gi|356526563|ref|XP_003531886.1| chr0 119682494 119687822 -
2 domain predictions
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Lj0g3v0232589.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Glycine max] gi|356533257|ref|XP_003535182.1| chr0 120725639 120728473 +
2 domain predictions
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Lj0g3v0235829.1
n.a. GTP binding protein beta 1 isoform 1 [Theobroma cacao] gi|508706146|gb|EOX98042.1| chr0 122184006 122186029 +
2 domain predictions
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Lj0g3v0246299.1
n.a. PREDICTED: WD repeat-containing protein 26-like [Cicer arietinum] gi|502098628|ref|XP_004491280.1| chr0 127620996 127622858 +
2 domain predictions
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Lj0g3v0246579.1
n.a. Periodic tryptophan protein-like protein [Medicago truncatula] gi|357507105|ref|XP_003623841.1| chr0 127772333 127778039 -
2 domain predictions
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Lj0g3v0249849.1
n.a. WD-40 repeat family [Medicago truncatula] gi|358349511|ref|XP_003638779.1| chr0 129506695 129509319 +
2 domain predictions
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Lj0g3v0251579.1
n.a. PREDICTED: elongator complex protein 2-like [Glycine max] gi|356575590|ref|XP_003555922.1| chr0 130515247 130520416 -
2 domain predictions
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Lj0g3v0269979.1
n.a. PREDICTED: topless-related protein 4-like [Glycine max] gi|356546114|ref|XP_003541476.1| chr0 139884904 139890687 +
2 domain predictions
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Lj0g3v0269979.2
n.a. PREDICTED: topless-related protein 4-like [Glycine max] gi|356546114|ref|XP_003541476.1| chr0 139884904 139890687 +
2 domain predictions
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Lj0g3v0283109.1
n.a. WD-repeat cell cycle regulatory protein [Glycine max] gi|351727655|ref|NP_001237168.1| chr0 146731979 146736047 -
2 domain predictions
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Lj0g3v0283109.3
n.a. PREDICTED: protein FIZZY-RELATED 3-like [Glycine max] gi|356569370|ref|XP_003552875.1| chr0 146731979 146736047 -
2 domain predictions
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Lj0g3v0291969.1
n.a. PREDICTED: cleavage stimulation factor subunit 1-like [Glycine max] gi|356519146|ref|XP_003528235.1| chr0 151464789 151471597 -
2 domain predictions
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Lj0g3v0291969.2
n.a. PREDICTED: cleavage stimulation factor subunit 1-like [Cicer arietinum] gi|502087239|ref|XP_004488472.1| chr0 151464789 151472394 -
2 domain predictions
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Lj0g3v0294029.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform X3 [Cicer arietinum] gi|502132293|ref|XP_004501292.1| chr0 152771006 152777286 +
2 domain predictions
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Lj0g3v0294029.2
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform X3 [Cicer arietinum] gi|502132293|ref|XP_004501292.1| chr0 152771006 152777286 +
2 domain predictions
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Lj0g3v0294029.3
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform X2 [Cicer arietinum] gi|502132291|ref|XP_004501291.1| chr0 152771374 152777286 +
2 domain predictions
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Lj0g3v0299869.1
n.a. PREDICTED: protein TOPLESS-like isoform X1 [Cicer arietinum] gi|502080679|ref|XP_004486640.1| chr0 155783226 155791874 -
2 domain predictions
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Lj0g3v0299869.3
n.a. PREDICTED: topless-related protein 1-like [Glycine max] gi|356550630|ref|XP_003543688.1| chr0 155787253 155791878 -
2 domain predictions
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Lj0g3v0299959.2
n.a. PREDICTED: WD repeat-containing protein 13-like [Glycine max] gi|356546388|ref|XP_003541608.1| chr0 155807056 155813473 -
2 domain predictions
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Lj0g3v0310479.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Glycine max] gi|356533257|ref|XP_003535182.1| chr0 162150911 162154315 +
2 domain predictions
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Lj0g3v0324319.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 8 homolog [Glycine max] gi|356560233|ref|XP_003548398.1| chr0 169479543 169483357 +
2 domain predictions
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Lj0g3v0330279.1
n.a. PREDICTED: coatomer subunit alpha-1-like [Cicer arietinum] gi|502118198|ref|XP_004496148.1| chr0 172624600 172626582 -
2 domain predictions
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Lj0g3v0347099.1
n.a. ubiquitin-protein ligase [Cucumis melo subsp]. melo] gi|307136306|gb|ADN34130.1| chr0 182126708 182127364 +
2 domain predictions
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Lj0g3v0358089.1
n.a. PREDICTED: ASTRA-associated protein 1-like [Glycine max] gi|356517988|ref|XP_003527666.1| chr0 188430783 188436843 +
2 domain predictions
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Lj0g3v0363449.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356529844|ref|XP_003533497.1| chr0 191718048 191718851 -
2 domain predictions
 –