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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0443000 |
Transcript ID | LotjaGi1g1v0443000.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Trichome birefringence-like protein; TAIR: AT5G01360.1 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q8LED3|TBL3_ARATH Protein trichome birefringence-like 3; TrEMBL-Plants: tr|I1JLD0|I1JLD0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0443000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94029360..94034149) extracted from Lotus japonicus Gifu genome v1.2.
TTAGAATTAACTCTTCAAAACTTCCATAGAATTACCCTTTATCAGATTTCCATTTTAATACTTAAATAAACTCAAAATTT TAAAGGAAACTAGTTTTTTTATCATAAGGAAACTAGTTTTACTCCAACTCAAATTGCCAATTACATGAATCCTGAAAATT TCACCCCAGTACATTGTAGTGCAGATTGTGCACATTACAATACTACTAGGAGATTCATTCAACTCCTGCACAATTGATCT GTCATGTGTGAGCCATACACTGTCATTGGCTCATTACTTAATCCAGTATACCCAACAGTAGTGGCAAAAAGTGGTGTAAG ACACAATTCAGTTTGATGGAAACATCTGTGGAATATTCAACAAAAGTCATAGGAGAGAGAGAGAGAGAGCTAGAGAGAGA GAGAGAGAGACTTAACAAACCTTCCAATAGTATATTTCCCACCTGATGAATATACTACATCATCTACGTATATGTAAGAA CTAGAAAGCATGATTGGTTGGCCAAATTCATAGCTTACTCTACATGGACAAAGATGTTAGCCTCTCAACTCATTCCTTAA CCTCCAGTACCCTTTTGCATTTTTTTAACATGAACAAAACATAAAATGCTTTAACTTCACTCCTACTCAAAAATGCAATA AAACCTTCCCCTCTAAACTCTTTCTACAATGTCCTCATCATTCTGTTGTGCTTTTCATTAATTCATTCTCTCTCTTCACA CCTTTAAGCTTCTTCTCTCATCCCTTTCCTCATGATCCCTTCAGGAATAATGAAGCCTCTCAGAGGAAAGCTTCCTCTGC CCATCATTATCACCACTCTCTGTGTTCTTTTCTTCATAGCTGTCTTGTATGCAGAGAGACTCAGTTTCCTCTCTTCCAAG TCAATTTTTAAGTTCAAAACCTGTCCAAGAAAAAACACCAAACCAAAATCCAGTAAGTGCATATTTGGAAATCCTTCTAC AATTTATTCTCAAGTCAAAATGAATTCTACTGAGAAGCTTATGTGAGTAGCTTGTGGGTGTCAGAATTGATTCCGAGGAA AAATATGCTAATCCTAACATAGAAACCATCTCACCTCATCTCATCTGCTTTCTTCTTGCAAATTTGATTCTAATGCAATG ATCATGCCATGATTGTCCTAACAGGTGATAAAAGAGTAGATAAGGAGATTGCAAATGCATCATGGATTGATGACAGGTTT GATTTTGACCCAGAGGAGTGCAATGTTGCCAATGGGAAATGGGTGTATAACAAATCAATAGAGCCTCTTTACTCTGACAC AAGCTGCCCTTATGTAGATAGACAGTTTTCTTGTGTCAATAATGGGAGAACAGATTCTGACTATCGCCACTGGGAGTGGC AGCCAGAAGATTGTACCTTGCCCAAGTAAGTTTTAACGCATTTTTGAAAATTCTTCTAAAATTGACTCTAAAGCCAAAAT CAATAATGAGAAGAAAGCTCCTAGGTGTCAGAAACCAGGAATTGATTCTGATGAAAGACAAGCAGACCCAAACACACTAT CAAACTCTAACATATCATCTTTGACTGCTGTACTTATTTTATGTATCTCCAACATTTTGGTCATAGATATACATGTTTAC CTGATATTACACACATTATTCCTTTGTAGTTTCAATCCAGAGCTTGCCCTCCAAAAGCTTCAAGGGAAAAGGCTGTTATT TGTAGGAGATTCACTGCAAAGAAACCAGTGGGAATCTTTTGTCTGCTTGGTAGAATGGATCATACCTCAAAAGCAGAAAT CTATGAAACGAGGGCGGGTTCATTCAGTCTTCAAAGTAAAGGTATTGATACATACAATTGATGGTCAAATATGTATACTC AATAATTTATTAACTTAGTCAAAACCTCTTCTGCTTCTCAGAGCTAGATCAACTTATCTTTCTTCAGAATCGATTCTGAA ACTAAAAAGCTACTTACTGCAATTTTCCTCCAAAATTGACTTTGGCTTTAGGATCAATTGTTGGAAGATTTTTGAACATT GATTCAATCATGTACTTGACACAAATACAATAAAAGGTCTTACTATTAGGAATTCTTCTGAATAGATCATACTACTAACT CTTGGAAATCAAGCTACTCAAACTTGAAAATTCAGGCTAATTCTTTTTTGTGTCTGTGCTTCCATAGGAATACAATGCTA CTATAGAATTCTATTGGGCACCATACCTGGTTGAATCCAACACTGACATCAATATCATTGGAGATCAAAAGAAAAGAATA ATCAAAGTTGATGCCATCGCCGAGCGCGCCAAAAACTGGACTGGAGTAGATATCCTTGTTTTCAATACCTATGTATGGTG GATGAGTGGTCTCAGGATCAAATCATTGTAAGCTTCCTCTGAACTAATCTGATTTAAATTACTCACTAAATCTGCTTAAT CTGTCATTAATCTTTGGTTGCAGTTGACCAAAAGAAAGAAAATGGTTTCTAACATCTAGTTTAACAATTTCAGATGGGGA TCATTCGCCAATGGAGAAGCAGGGTATGAAGAATTTGACACACCAATTGCTTACAAGTTAGCTTTGAAAACATGGGCCAA TTGGGTTGACTCAACTATCAATCCAAACAAAACCAGAGTCTTCTTCACAACTATGTCACCTACACACACAAGGTCTCTTC TCTCTTAGAAAAACTTTAAATAGCAACTTATGCTATAAGCTAAGTAGTTTTTAGCTTTAAACACTTTTGAAATTTAAAAA AAAAAAACTTCATTAATGTTTATTCAATTAATAACTTAGCTTGTAACTTGCTCTCAAAGCCTTTATAATTAAGTGATCTG GAATTCAATCATTGTTGCCTCACTATTCTAATAAATAGTTAAATTTTAATATAAAGCATGTGGGCCTTTGTATTATACTT GCAAGAGAAAACCCATTAATAATGTGCCTTGATCTAAAGCTTTTGGGATATGGATTTGGATTTCGTGCCCTAACAGTTCA AATTTAAAGAAATTAATTTTATGTGTATGATTGTCATTTTAAATTCACCATCCAATTTTGTTATGACGTGTACTAAGCTA AGCTATGACTACAGTGACTTTAGAAAATTTTGAAAGGGAAATTGTTGAAATTGAGAGTAAAACACTAAAATGTTTTTCTA ACAACTCAAATATCTTGTTTCTCAGAAGTCAAGACTGGGGCAACATGGAAAATGTGAAATGCTTCAACGAGACAAAGCCA GTGAGGAAAAAGAATCACTGGGGAACTGGTTCTGATAAGCGCATAATGAGTGTGGTGGCCAAAGTGGTGAAAAAAATGAA AGTTCCAGTGACTGTTATCAACATAACACAGATATCAGAGTACAGAATTGATGGCCATTCCTCTGTTTACACTGAAACTG GAGGGAAATTGTTAACTGAAGAGGAAAGAACTGATCCACAAAATGCAGATTGCATACACTGGTGTTTGCCTGGAGTTCCA GATACATGGAATCAAATATTTTTGGCAATGTTATAACAATATCTTGCATAAAGATCAATGTTTTTATGACTTTATGTACA TTCAATCTTTCAGTGCTATTTGTGTGGTAAAAATATACATGCATCAGCATCCATCATGGATCCCTATTTGCAGATTCCTG AAGACAAAAAGCGCCAAATTATCAAATATCCGATGAGCATTGAGACTCCATCAGAGCACCGAAAAAGGGTTACATTTTCA GTGTCACATTGAGACATACACAGCAATTTTTCTGGGAGCCAAAAGGAAGACCCATATATATCATGACTTATGACTATAAG TTGTTTTGAAAAATTCAATAAAAAATCAGCAGTGCCGATTTCATGCTCTTTTCTTGTTAGACTAAAGATAAGGATCAGTT GTACTTCTTAACTATCTTATCAAAATCATTTTGTGGATCAAACATTTGGTCAGATGGAGGTACTACTGCCCTCACTCTCT TCACCATTTGCCTCGACACCTGACAACCGTACTGTCTTTGGTGTTTGTCAAAGTAAAGTGCAAGATAATGCAGTACAGGT TGTCAAGACACCAGGATCGCTCTTAGAGAACTTGATGGACAATGAATTAAAATGACAATCTTAAGGAAATAACCATTCCA TTTGCAGCAGACTATCTATTCTGGGGATGGACTAGTAACCCCCACAAACAGTGCACCATCCACGATCGTTACTAATCCTA GCCAGTCCTACTAGCAGACTAATAACCAAAGACCTCAAGCGAAGGCAACTCACTTCCACTCAAGCTCATGTCAATGATTA TGTCAATGGTAGAGCTGAGAGACTACTGTACTAGGGACAGACTAGCGACCCCCTCAAACGGTGCCTTGTCCATGATAGTT ACTAGTCCTACTCGTACCGCTCCTAGTAACAAACTAGTAGCCACAAACCTCAATCGAAGATAACTCGCACTCTACTTCCA TTCAAGCTCATGCCAACGATTATGTCAATGGCAGAGCTGGCGGACTATTGTTTTGGGAATGGACTAGTGGCTCTTTCCGA ATGATAACTCGTCTATAGCAGCTACTAGTACTAGCCAATCTTAATGGACTAGTAACCACCCTAACTCGTCTATAGAAACT ACTAGTCCTAGTCAATCCTAGTAATGGACTAGTAACCCCCTATCTCGTCTATAGTAGCCGCTAGTCCTAGTCAATCCTAG TAATGGATTAGTAACCCCTACCTCATCTATAATAGCTACTAGTCTTGGTCAGTCCTAGTAACGGACTAATAACCCCTCCA ATCGAGACCTCGTCTATGATTGGTACTAGTCCTAGCTAGTCTTGGTAATGGACTAGCAAGACCCTCCAGG
CDS sequence (LotjaGi1g1v0443000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCCCTTCAGGAATAATGAAGCCTCTCAGAGGAAAGCTTCCTCTGCCCATCATTATCACCACTCTCTGTGTTCTTTT CTTCATAGCTGTCTTGTATGCAGAGAGACTCAGTTTCCTCTCTTCCAAGTCAATTTTTAAGTTCAAAACCTGTCCAAGAA AAAACACCAAACCAAAATCCAGTGATAAAAGAGTAGATAAGGAGATTGCAAATGCATCATGGATTGATGACAGGTTTGAT TTTGACCCAGAGGAGTGCAATGTTGCCAATGGGAAATGGGTGTATAACAAATCAATAGAGCCTCTTTACTCTGACACAAG CTGCCCTTATGTAGATAGACAGTTTTCTTGTGTCAATAATGGGAGAACAGATTCTGACTATCGCCACTGGGAGTGGCAGC CAGAAGATTGTACCTTGCCCAATTTCAATCCAGAGCTTGCCCTCCAAAAGCTTCAAGGGAAAAGGCTGTTATTTGTAGGA GATTCACTGCAAAGAAACCAGTGGGAATCTTTTGTCTGCTTGGTAGAATGGATCATACCTCAAAAGCAGAAATCTATGAA ACGAGGGCGGGTTCATTCAGTCTTCAAAGTAAAGGAATACAATGCTACTATAGAATTCTATTGGGCACCATACCTGGTTG AATCCAACACTGACATCAATATCATTGGAGATCAAAAGAAAAGAATAATCAAAGTTGATGCCATCGCCGAGCGCGCCAAA AACTGGACTGGAGTAGATATCCTTGTTTTCAATACCTATGTATGGTGGATGAGTGGTCTCAGGATCAAATCATTATGGGG ATCATTCGCCAATGGAGAAGCAGGGTATGAAGAATTTGACACACCAATTGCTTACAAGTTAGCTTTGAAAACATGGGCCA ATTGGGTTGACTCAACTATCAATCCAAACAAAACCAGAGTCTTCTTCACAACTATGTCACCTACACACACAAGAAGTCAA GACTGGGGCAACATGGAAAATGTGAAATGCTTCAACGAGACAAAGCCAGTGAGGAAAAAGAATCACTGGGGAACTGGTTC TGATAAGCGCATAATGAGTGTGGTGGCCAAAGTGGTGAAAAAAATGAAAGTTCCAGTGACTGTTATCAACATAACACAGA TATCAGAGTACAGAATTGATGGCCATTCCTCTGTTTACACTGAAACTGGAGGGAAATTGTTAACTGAAGAGGAAAGAACT GATCCACAAAATGCAGATTGCATACACTGGTGTTTGCCTGGAGTTCCAGATACATGGAATCAAATATTTTTGGCAATGTT ATAA
Protein sequence (LotjaGi1g1v0443000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIPSGIMKPLRGKLPLPIIITTLCVLFFIAVLYAERLSFLSSKSIFKFKTCPRKNTKPKSSDKRVDKEIANASWIDDRFD FDPEECNVANGKWVYNKSIEPLYSDTSCPYVDRQFSCVNNGRTDSDYRHWEWQPEDCTLPNFNPELALQKLQGKRLLFVG DSLQRNQWESFVCLVEWIIPQKQKSMKRGRVHSVFKVKEYNATIEFYWAPYLVESNTDINIIGDQKKRIIKVDAIAERAK NWTGVDILVFNTYVWWMSGLRIKSLWGSFANGEAGYEEFDTPIAYKLALKTWANWVDSTINPNKTRVFFTTMSPTHTRSQ DWGNMENVKCFNETKPVRKKNHWGTGSDKRIMSVVAKVVKKMKVPVTVINITQISEYRIDGHSSVYTETGGKLLTEEERT DPQNADCIHWCLPGVPDTWNQIFLAML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 34 | 34 | - | – | |
Phobius | 1 | 17 | 17 | - | – | |
PANTHER | 2 | 426 | 425 | 6.3E-239 | ||
PANTHER | 2 | 426 | 425 | 6.3E-239 | – | |
TMHMM | 12 | 34 | 23 | - | – | |
Phobius | 18 | 29 | 12 | - | – | |
Phobius | 30 | 34 | 5 | - | – | |
Phobius | 35 | 427 | 393 | - | – | |
Pfam | 84 | 137 | 54 | 3.8E-20 | ||
Pfam | 139 | 426 | 288 | 1.6E-94 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0443000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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