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LotjaGi1g1v0443000.1

Overview

Field Value
Gene ID LotjaGi1g1v0443000
Transcript ID LotjaGi1g1v0443000.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Trichome birefringence-like protein; TAIR: AT5G01360.1 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q8LED3|TBL3_ARATH Protein trichome birefringence-like 3; TrEMBL-Plants: tr|I1JLD0|I1JLD0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0443000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:94029360..94034149) extracted from Lotus japonicus Gifu genome v1.2.

TTAGAATTAACTCTTCAAAACTTCCATAGAATTACCCTTTATCAGATTTCCATTTTAATACTTAAATAAACTCAAAATTT TAAAGGAAACTAGTTTTTTTATCATAAGGAAACTAGTTTTACTCCAACTCAAATTGCCAATTACATGAATCCTGAAAATT TCACCCCAGTACATTGTAGTGCAGATTGTGCACATTACAATACTACTAGGAGATTCATTCAACTCCTGCACAATTGATCT GTCATGTGTGAGCCATACACTGTCATTGGCTCATTACTTAATCCAGTATACCCAACAGTAGTGGCAAAAAGTGGTGTAAG ACACAATTCAGTTTGATGGAAACATCTGTGGAATATTCAACAAAAGTCATAGGAGAGAGAGAGAGAGAGCTAGAGAGAGA GAGAGAGAGACTTAACAAACCTTCCAATAGTATATTTCCCACCTGATGAATATACTACATCATCTACGTATATGTAAGAA CTAGAAAGCATGATTGGTTGGCCAAATTCATAGCTTACTCTACATGGACAAAGATGTTAGCCTCTCAACTCATTCCTTAA CCTCCAGTACCCTTTTGCATTTTTTTAACATGAACAAAACATAAAATGCTTTAACTTCACTCCTACTCAAAAATGCAATA AAACCTTCCCCTCTAAACTCTTTCTACAATGTCCTCATCATTCTGTTGTGCTTTTCATTAATTCATTCTCTCTCTTCACA CCTTTAAGCTTCTTCTCTCATCCCTTTCCTCATGATCCCTTCAGGAATAATGAAGCCTCTCAGAGGAAAGCTTCCTCTGC CCATCATTATCACCACTCTCTGTGTTCTTTTCTTCATAGCTGTCTTGTATGCAGAGAGACTCAGTTTCCTCTCTTCCAAG TCAATTTTTAAGTTCAAAACCTGTCCAAGAAAAAACACCAAACCAAAATCCAGTAAGTGCATATTTGGAAATCCTTCTAC AATTTATTCTCAAGTCAAAATGAATTCTACTGAGAAGCTTATGTGAGTAGCTTGTGGGTGTCAGAATTGATTCCGAGGAA AAATATGCTAATCCTAACATAGAAACCATCTCACCTCATCTCATCTGCTTTCTTCTTGCAAATTTGATTCTAATGCAATG ATCATGCCATGATTGTCCTAACAGGTGATAAAAGAGTAGATAAGGAGATTGCAAATGCATCATGGATTGATGACAGGTTT GATTTTGACCCAGAGGAGTGCAATGTTGCCAATGGGAAATGGGTGTATAACAAATCAATAGAGCCTCTTTACTCTGACAC AAGCTGCCCTTATGTAGATAGACAGTTTTCTTGTGTCAATAATGGGAGAACAGATTCTGACTATCGCCACTGGGAGTGGC AGCCAGAAGATTGTACCTTGCCCAAGTAAGTTTTAACGCATTTTTGAAAATTCTTCTAAAATTGACTCTAAAGCCAAAAT CAATAATGAGAAGAAAGCTCCTAGGTGTCAGAAACCAGGAATTGATTCTGATGAAAGACAAGCAGACCCAAACACACTAT CAAACTCTAACATATCATCTTTGACTGCTGTACTTATTTTATGTATCTCCAACATTTTGGTCATAGATATACATGTTTAC CTGATATTACACACATTATTCCTTTGTAGTTTCAATCCAGAGCTTGCCCTCCAAAAGCTTCAAGGGAAAAGGCTGTTATT TGTAGGAGATTCACTGCAAAGAAACCAGTGGGAATCTTTTGTCTGCTTGGTAGAATGGATCATACCTCAAAAGCAGAAAT CTATGAAACGAGGGCGGGTTCATTCAGTCTTCAAAGTAAAGGTATTGATACATACAATTGATGGTCAAATATGTATACTC AATAATTTATTAACTTAGTCAAAACCTCTTCTGCTTCTCAGAGCTAGATCAACTTATCTTTCTTCAGAATCGATTCTGAA ACTAAAAAGCTACTTACTGCAATTTTCCTCCAAAATTGACTTTGGCTTTAGGATCAATTGTTGGAAGATTTTTGAACATT GATTCAATCATGTACTTGACACAAATACAATAAAAGGTCTTACTATTAGGAATTCTTCTGAATAGATCATACTACTAACT CTTGGAAATCAAGCTACTCAAACTTGAAAATTCAGGCTAATTCTTTTTTGTGTCTGTGCTTCCATAGGAATACAATGCTA CTATAGAATTCTATTGGGCACCATACCTGGTTGAATCCAACACTGACATCAATATCATTGGAGATCAAAAGAAAAGAATA ATCAAAGTTGATGCCATCGCCGAGCGCGCCAAAAACTGGACTGGAGTAGATATCCTTGTTTTCAATACCTATGTATGGTG GATGAGTGGTCTCAGGATCAAATCATTGTAAGCTTCCTCTGAACTAATCTGATTTAAATTACTCACTAAATCTGCTTAAT CTGTCATTAATCTTTGGTTGCAGTTGACCAAAAGAAAGAAAATGGTTTCTAACATCTAGTTTAACAATTTCAGATGGGGA TCATTCGCCAATGGAGAAGCAGGGTATGAAGAATTTGACACACCAATTGCTTACAAGTTAGCTTTGAAAACATGGGCCAA TTGGGTTGACTCAACTATCAATCCAAACAAAACCAGAGTCTTCTTCACAACTATGTCACCTACACACACAAGGTCTCTTC TCTCTTAGAAAAACTTTAAATAGCAACTTATGCTATAAGCTAAGTAGTTTTTAGCTTTAAACACTTTTGAAATTTAAAAA AAAAAAACTTCATTAATGTTTATTCAATTAATAACTTAGCTTGTAACTTGCTCTCAAAGCCTTTATAATTAAGTGATCTG GAATTCAATCATTGTTGCCTCACTATTCTAATAAATAGTTAAATTTTAATATAAAGCATGTGGGCCTTTGTATTATACTT GCAAGAGAAAACCCATTAATAATGTGCCTTGATCTAAAGCTTTTGGGATATGGATTTGGATTTCGTGCCCTAACAGTTCA AATTTAAAGAAATTAATTTTATGTGTATGATTGTCATTTTAAATTCACCATCCAATTTTGTTATGACGTGTACTAAGCTA AGCTATGACTACAGTGACTTTAGAAAATTTTGAAAGGGAAATTGTTGAAATTGAGAGTAAAACACTAAAATGTTTTTCTA ACAACTCAAATATCTTGTTTCTCAGAAGTCAAGACTGGGGCAACATGGAAAATGTGAAATGCTTCAACGAGACAAAGCCA GTGAGGAAAAAGAATCACTGGGGAACTGGTTCTGATAAGCGCATAATGAGTGTGGTGGCCAAAGTGGTGAAAAAAATGAA AGTTCCAGTGACTGTTATCAACATAACACAGATATCAGAGTACAGAATTGATGGCCATTCCTCTGTTTACACTGAAACTG GAGGGAAATTGTTAACTGAAGAGGAAAGAACTGATCCACAAAATGCAGATTGCATACACTGGTGTTTGCCTGGAGTTCCA GATACATGGAATCAAATATTTTTGGCAATGTTATAACAATATCTTGCATAAAGATCAATGTTTTTATGACTTTATGTACA TTCAATCTTTCAGTGCTATTTGTGTGGTAAAAATATACATGCATCAGCATCCATCATGGATCCCTATTTGCAGATTCCTG AAGACAAAAAGCGCCAAATTATCAAATATCCGATGAGCATTGAGACTCCATCAGAGCACCGAAAAAGGGTTACATTTTCA GTGTCACATTGAGACATACACAGCAATTTTTCTGGGAGCCAAAAGGAAGACCCATATATATCATGACTTATGACTATAAG TTGTTTTGAAAAATTCAATAAAAAATCAGCAGTGCCGATTTCATGCTCTTTTCTTGTTAGACTAAAGATAAGGATCAGTT GTACTTCTTAACTATCTTATCAAAATCATTTTGTGGATCAAACATTTGGTCAGATGGAGGTACTACTGCCCTCACTCTCT TCACCATTTGCCTCGACACCTGACAACCGTACTGTCTTTGGTGTTTGTCAAAGTAAAGTGCAAGATAATGCAGTACAGGT TGTCAAGACACCAGGATCGCTCTTAGAGAACTTGATGGACAATGAATTAAAATGACAATCTTAAGGAAATAACCATTCCA TTTGCAGCAGACTATCTATTCTGGGGATGGACTAGTAACCCCCACAAACAGTGCACCATCCACGATCGTTACTAATCCTA GCCAGTCCTACTAGCAGACTAATAACCAAAGACCTCAAGCGAAGGCAACTCACTTCCACTCAAGCTCATGTCAATGATTA TGTCAATGGTAGAGCTGAGAGACTACTGTACTAGGGACAGACTAGCGACCCCCTCAAACGGTGCCTTGTCCATGATAGTT ACTAGTCCTACTCGTACCGCTCCTAGTAACAAACTAGTAGCCACAAACCTCAATCGAAGATAACTCGCACTCTACTTCCA TTCAAGCTCATGCCAACGATTATGTCAATGGCAGAGCTGGCGGACTATTGTTTTGGGAATGGACTAGTGGCTCTTTCCGA ATGATAACTCGTCTATAGCAGCTACTAGTACTAGCCAATCTTAATGGACTAGTAACCACCCTAACTCGTCTATAGAAACT ACTAGTCCTAGTCAATCCTAGTAATGGACTAGTAACCCCCTATCTCGTCTATAGTAGCCGCTAGTCCTAGTCAATCCTAG TAATGGATTAGTAACCCCTACCTCATCTATAATAGCTACTAGTCTTGGTCAGTCCTAGTAACGGACTAATAACCCCTCCA ATCGAGACCTCGTCTATGATTGGTACTAGTCCTAGCTAGTCTTGGTAATGGACTAGCAAGACCCTCCAGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0443000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATCCCTTCAGGAATAATGAAGCCTCTCAGAGGAAAGCTTCCTCTGCCCATCATTATCACCACTCTCTGTGTTCTTTT CTTCATAGCTGTCTTGTATGCAGAGAGACTCAGTTTCCTCTCTTCCAAGTCAATTTTTAAGTTCAAAACCTGTCCAAGAA AAAACACCAAACCAAAATCCAGTGATAAAAGAGTAGATAAGGAGATTGCAAATGCATCATGGATTGATGACAGGTTTGAT TTTGACCCAGAGGAGTGCAATGTTGCCAATGGGAAATGGGTGTATAACAAATCAATAGAGCCTCTTTACTCTGACACAAG CTGCCCTTATGTAGATAGACAGTTTTCTTGTGTCAATAATGGGAGAACAGATTCTGACTATCGCCACTGGGAGTGGCAGC CAGAAGATTGTACCTTGCCCAATTTCAATCCAGAGCTTGCCCTCCAAAAGCTTCAAGGGAAAAGGCTGTTATTTGTAGGA GATTCACTGCAAAGAAACCAGTGGGAATCTTTTGTCTGCTTGGTAGAATGGATCATACCTCAAAAGCAGAAATCTATGAA ACGAGGGCGGGTTCATTCAGTCTTCAAAGTAAAGGAATACAATGCTACTATAGAATTCTATTGGGCACCATACCTGGTTG AATCCAACACTGACATCAATATCATTGGAGATCAAAAGAAAAGAATAATCAAAGTTGATGCCATCGCCGAGCGCGCCAAA AACTGGACTGGAGTAGATATCCTTGTTTTCAATACCTATGTATGGTGGATGAGTGGTCTCAGGATCAAATCATTATGGGG ATCATTCGCCAATGGAGAAGCAGGGTATGAAGAATTTGACACACCAATTGCTTACAAGTTAGCTTTGAAAACATGGGCCA ATTGGGTTGACTCAACTATCAATCCAAACAAAACCAGAGTCTTCTTCACAACTATGTCACCTACACACACAAGAAGTCAA GACTGGGGCAACATGGAAAATGTGAAATGCTTCAACGAGACAAAGCCAGTGAGGAAAAAGAATCACTGGGGAACTGGTTC TGATAAGCGCATAATGAGTGTGGTGGCCAAAGTGGTGAAAAAAATGAAAGTTCCAGTGACTGTTATCAACATAACACAGA TATCAGAGTACAGAATTGATGGCCATTCCTCTGTTTACACTGAAACTGGAGGGAAATTGTTAACTGAAGAGGAAAGAACT GATCCACAAAATGCAGATTGCATACACTGGTGTTTGCCTGGAGTTCCAGATACATGGAATCAAATATTTTTGGCAATGTT ATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0443000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIPSGIMKPLRGKLPLPIIITTLCVLFFIAVLYAERLSFLSSKSIFKFKTCPRKNTKPKSSDKRVDKEIANASWIDDRFD FDPEECNVANGKWVYNKSIEPLYSDTSCPYVDRQFSCVNNGRTDSDYRHWEWQPEDCTLPNFNPELALQKLQGKRLLFVG DSLQRNQWESFVCLVEWIIPQKQKSMKRGRVHSVFKVKEYNATIEFYWAPYLVESNTDINIIGDQKKRIIKVDAIAERAK NWTGVDILVFNTYVWWMSGLRIKSLWGSFANGEAGYEEFDTPIAYKLALKTWANWVDSTINPNKTRVFFTTMSPTHTRSQ DWGNMENVKCFNETKPVRKKNHWGTGSDKRIMSVVAKVVKKMKVPVTVINITQISEYRIDGHSSVYTETGGKLLTEEERT DPQNADCIHWCLPGVPDTWNQIFLAML
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 34 34 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 17 17 - –
PANTHER
PTHR32285
2 426 425 6.3E-239
IPR029962
PANTHER
PTHR32285:SF179
2 426 425 6.3E-239 –
TMHMM
TMhelix
12 34 23 - –
Phobius
SIGNAL_PEPTIDE_H_REGION
18 29 12 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
30 34 5 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
35 427 393 - –
Pfam
PF14416
84 137 54 3.8E-20
IPR025846
Pfam
PF13839
139 426 288 1.6E-94
IPR026057

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0443000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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