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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0462800 |
Transcript ID | LotjaGi1g1v0462800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | AT hook motif DNA-binding family protein; TAIR: AT4G12080.1 AT-hook motif nuclear-localized protein 1; Swiss-Prot: sp|Q8VYJ2|AHL1_ARATH AT-hook motif nuclear-localized protein 1; TrEMBL-Plants: tr|A0A151TB87|A0A151TB87_CAJCA Putative DNA-binding protein ESCAROLA; Found in the gene: LotjaGi1g1v0462800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96708539..96711512) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGGGAGAGAAGGTATGAGCTCTGGTGTTACAGTGATAGGAGCAGAAGCTCCATCAGCATATCACATGGCACCAAG GGTTGAAGCTCCAATTCAAAACCAGGGTCCTGTTCCTGTTCCTGAAGCTTCAGCAGCTATTGTGGTCTCACCAGTGAGTG TGGGATTGGATGGAGGAGTAGTGAAGAAGAAAAGGGGCAGGCCAAGGAAATATGGGCCAGATGCTCCAGGTGGTGGTACT ATGGCATTGTCGCCGTTGCCGATCTCATCTTCGGCTCCATTTTCTAATGACTTTTCGTCCGGGAAGCGGGGGAAACCGCA GGGGATGGAATACAAGCAATCCAAGAAAGCTGGGGTGGATCATCTAGGTAATTGGATTTGATGTTTTTAATGCTAATATA TGTTAAAGTCTCATATTGACTAGAGATATGACTAAATAAATCCATATATAGGGGAAATAAATCTTCACCATGAGCTTGCT TTTGGGTAGAATAAAGCTTAACATGAATTTCTCTTGTCATTGTTGTTGACCTTAACATTTCTTACTTCTTGAGTAGCATT AGTAATATAGGATGTGGGGAAAACTTTATTTTTTGAATGAAAACTTTATTTTTTGAATAAAGTTTAATTGACTAATGTGG CAAATCTTTGAAATTTGATTTGTTGACCGTGTAAAAAATCTGTACTCTTGAAAAATATATTGGATTTGACTTCTCTACTA ACTCTGCTCAACATAGGAAAAATGTCAAAATGATAGTTGGGTTTTGTTTAAAATTACTCACACTGCTAAGATAATTCATA ATGTATCCTCAGACGAATACAAAGCAGTATATATATAACACCATTGCTTACTTTAATTTTCAACTCAATTCTGTTAATAT GCATTTTTTATGTTTCTGCAGGTGACTCTGTTGGTACAAATTTCATGCCCCATATCATTACCGTCAATGCTGGTGAGGTA TGCTTATTATGGAGGGGGAAAACATCTGTTTTTATCTTTATTTGGTATATGAGTTTGCATAAAATTTCTCTCTCAAACTA TTTGCTATGTATACACTTACCATACATCCAATCACATCCCTAAACATGCTTTTGTATCTTGTAATGCTAATTCTTCCTGC TGAAGAATAAATTGTTTTGTTGTTTCAGGACATTACGATGAAGGTTATATCTTTTTCCCAACAAGGGCCTCGAGCTATAT GCATCTTGTCTGCTAATGGTGTAATTTCAAATGTTACACTTCGCCAGCCTGATTCTTCTGGAGGAACGTTGACCTATGAG GTTCTGCTCATTATTGCATGTTTTATTTTATAATTTTCAAATTTACCTTTTCTTCATAATCACATCTTCAATTCTTTTTA AATTTTTGTATTACCTAAGTTAATTTGAAAAAAAATGTCTGTCTTACAAGATAGGACTTTTATTCAGTTTTATTTTGTGT GTATAATTGAACATTTGATGGTACTTAATGGTAATTCGCAACTTAGTATAAGTTCATCATTCACTCGGAAATTGTAGTTT TCATTTGAATGCTTGTATGAGGTTTATCTTGGGTGGTAAAAATATCTTATTTTTACAAACTTGAATTTTTTCTCTAGGGC CGTTTTGAGATACTTTCATTGTCTGGATCATTCATGCCTACTGAAAGCCAAGGAACAAGAAGCAGATCTGGTGGGATGAG TGTTTCTTTGTCGAGCCCAGATGGCCGTGTTGTCGGTGGAGGAGTTGCTGGTCTTCTTGTCGCTGCCAGCCCTGTGCAGG TAAAACATTCCCTGCAATCCTAATAGTAATTCTCAATCTCAACTATATGTGCATGTGAATTATATGTGTGCAGTGTGCAC CTATCTGTTTCTTGGAATTTTCAGTTGGGGATGGTTTGGGTAGTAAGGTACTAAGGTTGCCTTCAGAACAGTACTCAATA TCCCTTATTTTCTGTCATGTTGATAACTTTGCCAAATAATGTATCTCAAGTCAACACAAACAATTTGTGGGTTGAGAAAA CCATGGGGAGACCAAAATCATGGTGGATGGTCGCAAAAGCTAAGGGAAGTTGCTTTTGTCCACCGTGATTTTGGCTTCAC CATGGTTTTCAATTCTACATGTATCCAAAGATGCATAAAATAGGCAACTCGCCTTGTTCCTATTTATAAGTCATATTCTA GAAGCTTTTTCATGTCCCTTAATATTAGTCACTTTAGAATACTAATGAATCTTAAAATATTTTTCCCCAATTTTATCCTT CATATTTAATGCTCTATATCTAATTACCTACACTCACCCGTAATTTTTTCCAGTTTCGAGGTAATTCAGGAAAGTAACAT GTTCTGATTCATACTAATAACTACTCTTTCCAATTCATGTGAATCAGTTGAAAGTGACTTATAAATGGAAATAGATCGAG TAGCTCAGTAGCTTGCTTGCATGCAGTACTTAATAAAGGGGACCATGGAATCGTTGTGGAACCCATTTGGATAAAGACCT ATTGGAGTTTATTGAAGCTTATCTACTAGAAAAAACCCTAGATTTCCAATAAGTGTTCTTTGGTTTGCATCCAAACGGGT TCATAGTGTAGCATCTGGTGCAATTTAATTTTTAACAATTTGGGCATAACATTTCTTCCTCAAATAAAGAATCACTTAGA TACCTTTTGTTCTCTGTCATATCAGGTGGTGGTGGCAAGTTTTCTGCCAAGCAACCAGCAAGATCAGAAACCAAAGAAGC CAAAGTCTGATTATGCATCACCCCCAGCTACTTTTACACCAGCCACCGCAGTGTCTTCTGCACCATCCGCAGCTAATGGT GAAAAGGAAGATGTCATGAGCTCCCATCTACTGCAAAATTCTGGAGCCTTCAACCCAAACCTCGCTCCTCCTCCTCCGTC GGCCTTTCGAAGAGAAAACTGGGTTAACATGCACTCTATGCCGGATTCGATGAAGTCCGCAACTGATATTAACATATCTT TACCTGATAATTAA
CDS sequence (LotjaGi1g1v0462800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGGAGAGAAGGTATGAGCTCTGGTGTTACAGTGATAGGAGCAGAAGCTCCATCAGCATATCACATGGCACCAAG GGTTGAAGCTCCAATTCAAAACCAGGGTCCTGTTCCTGTTCCTGAAGCTTCAGCAGCTATTGTGGTCTCACCAGTGAGTG TGGGATTGGATGGAGGAGTAGTGAAGAAGAAAAGGGGCAGGCCAAGGAAATATGGGCCAGATGCTCCAGGTGGTGGTACT ATGGCATTGTCGCCGTTGCCGATCTCATCTTCGGCTCCATTTTCTAATGACTTTTCGTCCGGGAAGCGGGGGAAACCGCA GGGGATGGAATACAAGCAATCCAAGAAAGCTGGGGTGGATCATCTAGGTGACTCTGTTGGTACAAATTTCATGCCCCATA TCATTACCGTCAATGCTGGTGAGGACATTACGATGAAGGTTATATCTTTTTCCCAACAAGGGCCTCGAGCTATATGCATC TTGTCTGCTAATGGTGTAATTTCAAATGTTACACTTCGCCAGCCTGATTCTTCTGGAGGAACGTTGACCTATGAGGGCCG TTTTGAGATACTTTCATTGTCTGGATCATTCATGCCTACTGAAAGCCAAGGAACAAGAAGCAGATCTGGTGGGATGAGTG TTTCTTTGTCGAGCCCAGATGGCCGTGTTGTCGGTGGAGGAGTTGCTGGTCTTCTTGTCGCTGCCAGCCCTGTGCAGGTG GTGGTGGCAAGTTTTCTGCCAAGCAACCAGCAAGATCAGAAACCAAAGAAGCCAAAGTCTGATTATGCATCACCCCCAGC TACTTTTACACCAGCCACCGCAGTGTCTTCTGCACCATCCGCAGCTAATGGTGAAAAGGAAGATGTCATGAGCTCCCATC TACTGCAAAATTCTGGAGCCTTCAACCCAAACCTCGCTCCTCCTCCTCCGTCGGCCTTTCGAAGAGAAAACTGGGTTAAC ATGCACTCTATGCCGGATTCGATGAAGTCCGCAACTGATATTAACATATCTTTACCTGATAATTAA
Protein sequence (LotjaGi1g1v0462800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGREGMSSGVTVIGAEAPSAYHMAPRVEAPIQNQGPVPVPEASAAIVVSPVSVGLDGGVVKKKRGRPRKYGPDAPGGGT MALSPLPISSSAPFSNDFSSGKRGKPQGMEYKQSKKAGVDHLGDSVGTNFMPHIITVNAGEDITMKVISFSQQGPRAICI LSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTESQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAASPVQV VVASFLPSNQQDQKPKKPKSDYASPPATFTPATAVSSAPSAANGEKEDVMSSHLLQNSGAFNPNLAPPPPSAFRRENWVN MHSMPDSMKSATDINISLPDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 336 | 336 | 1.2E-120 | ||
PANTHER | 1 | 336 | 336 | 1.2E-120 | – | |
MobiDBLite | 60 | 81 | 22 | - | – | |
MobiDBLite | 93 | 116 | 24 | - | – | |
ProSiteProfiles | 127 | 268 | 142 | 40.723 | ||
SUPERFAMILY | 130 | 249 | 120 | 1.62E-31 | – | |
Gene3D | 131 | 263 | 133 | 5.8E-10 | – | |
Pfam | 132 | 245 | 114 | 1.8E-28 | ||
CDD | 132 | 222 | 91 | 4.86615E-27 | ||
MobiDBLite | 249 | 288 | 40 | - | – | |
MobiDBLite | 266 | 280 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi1g1v0462800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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