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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005175
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 80 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.433s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0190709.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508785649|gb|EOY32905.1| chr0 93234288 93234703 -
2 domain predictions
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Lj0g3v0227679.1
n.a. AT hook motif DNA-binding family protein [Theobroma cacao] gi|508775706|gb|EOY22962.1| chr0 117670687 117670826 +
2 domain predictions
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Lj0g3v0302789.1
n.a. AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1| chr0 157525301 157529536 +
4 domain predictions
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Lj0g3v0309609.1
n.a. AT-hook motif nuclear localized protein 20 [Theobroma cacao] gi|508714069|gb|EOY05966.1| chr0 161637754 161639413 +
4 domain predictions
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Lj0g3v0319459.1
n.a. AT-hook protein [Medicago truncatula] gi|357476667|ref|XP_003608619.1| chr0 166772577 166776520 -
4 domain predictions
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Lj0g3v0341349.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508776764|gb|EOY24020.1| chr0 178839630 178842255 -
4 domain predictions
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Lj1g3v1091170.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508723537|gb|EOY15434.1| chr1 13703076 13703585 -
4 domain predictions
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Lj1g3v1585840.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508723537|gb|EOY15434.1| chr1 19075974 19077424 -
4 domain predictions
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Lj1g3v2581050.1
n.a. AT-hook motif nuclear localized protein 1 [Theobroma cacao] gi|508704304|gb|EOX96200.1| chr1 29647521 29652241 -
4 domain predictions
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Lj1g3v2635100.1
n.a. AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1| chr1 30878999 30883387 -
4 domain predictions
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Lj1g3v2896220.1
n.a. AT-hook DNA-binding protein [Medicago truncatula] gi|357507933|ref|XP_003624255.1| chr1 32667304 32669008 -
4 domain predictions
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Lj1g3v3404290.1
n.a. AT-hook protein 1 [Zea mays] gi|226532898|ref|NP_001149717.1| chr1 39211773 39215090 -
4 domain predictions
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Lj1g3v3404390.1
n.a. AT-hook motif nuclear localized protein 29 [Arabidopsis thaliana] gi|15223074|ref|NP_177776.1| chr1 39255119 39257547 +
4 domain predictions
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Lj1g3v5020770.1
n.a. AT hook motif DNA-binding family protein [Theobroma cacao] gi|508719092|gb|EOY10989.1| chr1 61049726 61052315 -
4 domain predictions
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Lj1g3v5020770.2
n.a. AT hook motif DNA-binding family protein [Theobroma cacao] gi|508719092|gb|EOY10989.1| chr1 61049726 61053936 -
4 domain predictions
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Lj2g3v0039120.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508785649|gb|EOY32905.1| chr2 746266 747036 -
4 domain predictions
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Lj2g3v1280070.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508785649|gb|EOY32905.1| chr2 20594375 20595336 -
4 domain predictions
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Lj2g3v1984810.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508776764|gb|EOY24020.1| chr2 29212583 29214137 +
4 domain predictions
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Lj2g3v1984960.1
n.a. AT-hook protein [Medicago truncatula] gi|357476667|ref|XP_003608619.1| chr2 29232473 29236250 -
4 domain predictions
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Lj2g3v2002670.1
n.a. AT-hook motif nuclear-localized protein 1 [Arabidopsis thaliana] gi|22328578|ref|NP_192945.2| chr2 30405753 30411298 -
4 domain predictions
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Lj2g3v2002760.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508777264|gb|EOY24520.1| chr2 30456480 30457857 +
4 domain predictions
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Lj2g3v3106280.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508701126|gb|EOX93022.1| chr2 40034967 40036684 +
4 domain predictions
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Lj3g3v1128980.1
n.a. AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1| chr3 15196922 15200189 +
4 domain predictions
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Lj3g3v2735050.1
n.a. AT-hook motif nuclear localized protein 1 [Theobroma cacao] gi|508704304|gb|EOX96200.1| chr3 33636403 33641318 +
4 domain predictions
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Lj3g3v3016620.1
n.a. AT hook motif DNA-binding family protein [Theobroma cacao] gi|508786329|gb|EOY33585.1| chr3 37694389 37697656 -
2 domain predictions
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Lj4g3v1288490.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508777264|gb|EOY24520.1| chr4 19062689 19063594 -
4 domain predictions
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Lj4g3v1289560.1
n.a. AT-hook motif nuclear-localized protein 1 isoform 2 [Theobroma cacao] gi|508777258|gb|EOY24514.1| chr4 19089805 19094830 -
4 domain predictions
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Lj4g3v2951230.1
n.a. DNA-binding protein PD1 [Pisum sativum] gi|2213536|emb|CAA67290.1| chr4 39102707 39106087 -
4 domain predictions
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Lj5g3v0707730.1
n.a. HMG-I and HMG-Y, DNA-binding [Medicago truncatula] gi|140052431|gb|ABE80131.2| chr5 10351007 10354698 +
4 domain predictions
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Lj5g3v1208330.1
n.a. DNA-binding protein [Medicago truncatula] gi|357504087|ref|XP_003622332.1| chr5 19736808 19743516 +
4 domain predictions
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Lj5g3v1328780.1
n.a. SAP1 protein [Medicago truncatula] gi|357441299|ref|XP_003590927.1| chr5 20501609 20504421 +
4 domain predictions
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Lj5g3v1329810.1
n.a. DNA-binding protein [Medicago truncatula] gi|357441305|ref|XP_003590930.1| chr5 20516761 20518157 -
4 domain predictions
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Lj6g3v1618390.1
n.a. AT-hook DNA-binding family protein [Theobroma cacao] gi|508723537|gb|EOY15434.1| chr6 18269014 18271368 -
4 domain predictions
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LotjaGi1g1v0041800.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G42940.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9SJG4|AHL16_ARATH AT-hook motif nuclear-localized protein 16; TrEMBL-Plants: tr|A0A0B2PW89|A0A0B2PW89_GLYSO Putative DNA-binding protein ESCAROLA; Found in the gene: LotjaGi1g1v0041800 LjG1.1_chr1 5711379 5712167 -
4 domain predictions
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LotjaGi1g1v0041800.2
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G42940.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9SJG4|AHL16_ARATH AT-hook motif nuclear-localized protein 16; TrEMBL-Plants: tr|A0A0B2PW89|A0A0B2PW89_GLYSO Putative DNA-binding protein ESCAROLA; Found in the gene: LotjaGi1g1v0041800 LjG1.1_chr1 5711379 5712319 -
4 domain predictions
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LotjaGi1g1v0087700.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G14465.1 AT-hook motif nuclear-localized protein 20; Swiss-Prot: sp|Q8GWQ2|AHL20_ARATH AT-hook motif nuclear-localized protein 20; TrEMBL-Plants: tr|B9HMK7|B9HMK7_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0087700 LjG1.1_chr1 12717677 12721449 +
4 domain predictions
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LotjaGi1g1v0138000.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT5G49700.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9LTA2|AHL17_ARATH AT-hook motif nuclear-localized protein 17; TrEMBL-Plants: tr|I1JGZ4|I1JGZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0138000 LjG1.1_chr1 22521365 22524027 +
4 domain predictions
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LotjaGi1g1v0262800_LC.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT5G62260.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q9LVB0|AHL6_ARATH AT-hook motif nuclear-localized protein 6; TrEMBL-Plants: tr|V7CIJ7|V7CIJ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0262800_LC LjG1.1_chr1 64357867 64361555 -
3 domain predictions
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LotjaGi1g1v0301100.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT5G49700.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9LTA2|AHL17_ARATH AT-hook motif nuclear-localized protein 17; TrEMBL-Plants: tr|A0A1J7HCL8|A0A1J7HCL8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0301100 LjG1.1_chr1 73448803 73452600 -
4 domain predictions
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LotjaGi1g1v0462800.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G12080.1 AT-hook motif nuclear-localized protein 1; Swiss-Prot: sp|Q8VYJ2|AHL1_ARATH AT-hook motif nuclear-localized protein 1; TrEMBL-Plants: tr|A0A151TB87|A0A151TB87_CAJCA Putative DNA-binding protein ESCAROLA; Found in the gene: LotjaGi1g1v0462800 LjG1.1_chr1 96707903 96713104 -
4 domain predictions
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LotjaGi1g1v0462800.2
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G12080.1 AT-hook motif nuclear-localized protein 1; Swiss-Prot: sp|Q8VYJ2|AHL1_ARATH AT-hook motif nuclear-localized protein 1; TrEMBL-Plants: tr|A0A151TB87|A0A151TB87_CAJCA Putative DNA-binding protein ESCAROLA; Found in the gene: LotjaGi1g1v0462800 LjG1.1_chr1 96708539 96711512 -
4 domain predictions
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LotjaGi1g1v0491000.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G17800.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|O23620|AHL23_ARATH AT-hook motif nuclear-localized protein 23; TrEMBL-Plants: tr|I1L656|I1L656_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0491000 LjG1.1_chr1 100452030 100459128 -
4 domain predictions
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LotjaGi1g1v0491000.2
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G17800.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|O23620|AHL23_ARATH AT-hook motif nuclear-localized protein 23; TrEMBL-Plants: tr|I1L656|I1L656_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0491000 LjG1.1_chr1 100457395 100458908 -
4 domain predictions
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LotjaGi1g1v0491000.3
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G17800.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|O23620|AHL23_ARATH AT-hook motif nuclear-localized protein 23; TrEMBL-Plants: tr|I1L656|I1L656_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0491000 LjG1.1_chr1 100457786 100458595 -
4 domain predictions
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LotjaGi1g1v0519400_LC.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT5G49700.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9LTA2|AHL17_ARATH AT-hook motif nuclear-localized protein 17; TrEMBL-Plants: tr|A0A1J7IG21|A0A1J7IG21_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0519400_LC LjG1.1_chr1 104292656 104294020 -
3 domain predictions
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LotjaGi1g1v0569400.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G33620.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O22812|AHL10_ARATH AT-hook motif nuclear-localized protein 10; TrEMBL-Plants: tr|V7AUS6|V7AUS6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0569400 LjG1.1_chr1 110231950 110235440 -
4 domain predictions
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LotjaGi1g1v0786400.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT3G04590.2 AT hook motif DNA-binding family protein; Swiss-Prot: sp|A1L4X7|AHL14_ARATH AT-hook motif nuclear-localized protein 14; TrEMBL-Plants: tr|I1JRT6|I1JRT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0786400 LjG1.1_chr1 135865882 135871878 -
4 domain predictions
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LotjaGi2g1v0020500_LC.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT5G49700.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|Q9LTA2|AHL17_ARATH AT-hook motif nuclear-localized protein 17; TrEMBL-Plants: tr|A0A1J7IR24|A0A1J7IR24_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0020500_LC LjG1.1_chr2 7499799 7500664 +
4 domain predictions
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LotjaGi2g1v0160900_LC.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT4G12080.1 AT-hook motif nuclear-localized protein 1; Swiss-Prot: sp|Q8VYJ2|AHL1_ARATH AT-hook motif nuclear-localized protein 1; TrEMBL-Plants: tr|A0A0A0LB41|A0A0A0LB41_CUCSA Uncharacterized protein; Found in the gene: LotjaGi2g1v0160900_LC LjG1.1_chr2 56444203 56469460 +
4 domain predictions
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LotjaGi2g1v0167200_LC.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT3G04590.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|A1L4X7|AHL14_ARATH AT-hook motif nuclear-localized protein 14; TrEMBL-Plants: tr|V7CIJ7|V7CIJ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0167200_LC LjG1.1_chr2 57756404 57761006 +
2 domain predictions
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