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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0470300 |
| Transcript ID | LotjaGi1g1v0470300.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L1T9|K7L1T9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0470300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98111830..98116247) extracted from Lotus japonicus Gifu genome v1.2.
ATTATATTCCATTCCGCTCCGCTCCATTATGTTCCATCAATCCAAACATAGCCTTAGGTTTCCATTCAATGGAAGGAGCA AATAGATTTTGAGCTCTATCTGTTGGTGAAAGATGACCATGCAGCGACGCCGACGACGAAGGAGGAGCACGGCGGAGAAC CCTTCGCTCTCTTCCGTTCTTCTCCCTGACGAGTTGATTGAAGCGATTCTGGTGAGACTACCAGTGAGTTCTCTTCTCCG ATTCAAATCAGTGTGCAAATCGTGGCTCTCTGTAATTTCCGATCCCCAATTTGCGAAATCCCAATTTGACCTAGCTGCTT CACCCACCCACCGTCTCCTTCTCAGTGTCACTGATGACCTCAAATTCCAATCCTTAGACATTGATTCATCACCACCCAAT GACGATGAATCTGCAGTGCTCAACTACCCGCGTGAACAGCAGCCTTATTCTCATGGTAATACTTTATTTTCTAGCCTTCG GGTCCTGGGTTCTTGCAGAGGGTTTCTACTTTTACTTTCACGTTCACCCAATCAACCAGGAGGTCATTTCATTGTGTGTA ATCCATCAACGGGTTTCCATAGAAAAATTCCATCATCTTATAGTTTTAGTGATTATACGCATTTTCAGTATGGTTTTGGG TATGATCAATCAACTGATGACTACTTGTTAGTTTCTATTAATTCGTTTCCCGGTGATCCTAGTTCTTCAATTAAGTTGTT TTCTTTGAAAACCAATTTAACATGCTCGCTGCCACTGGATAATGAATATCACTATCTCGATTGTGGTTGTCCAAGCGATT TGTTCTTACATGGGTCCCTTCATTGGTTGGTTACGTCTAGAATTACGAGGCTTCATGTACTTCTTGCTTTTGATTTGGTA GGGAAGAGTTTATCAAAGATTGCTCAGTCACCTGATTTAGCTCAGCAGTTGAACAATAAACCATATGATTTAAGGGAGAT GGCAGGATGTCTTGCTCTATGTTACTCTGCTTATGGTGAAATGGCTGAAATGTGGATAATGAAAGAGTATAAAGTGCAAT CATCTTGGACTAAGATTGTTTTCTCTACTCATGATGAATCACCCTGCTTTTTTCCAATATGTTTCACTAAATGTGGTGAT GTATTTGGATCAGATGAGTTTGGAAGATTATTGAGACTCAACGATAAAGGAAAGCTACTTCCAGTTTATCCGTGGGATTG GTCTTGGGAGAGCAGATATCGTCTATTATATAGTCGTATGTATACAGCAAGTATACTGTCACTCCCTAGTTAATTTGCGG ACCAACAAAAAACAGACATGAAGTATCAATGTATGTAATTCTGCAAACCTTTTCACCATTTTAGTACTATTACTATCTAC CAAATGCATGCTTACATGAAAATGGTTCTTTAACCTATCTTATACTCTCTCCTTCCTAGCTAGTTATGTTCCTCTCTCTA TAAATAAGTGATACATGAAATTCCAAAGAAAGCTGATATTTTAAGGTTTACTGAATTCACTGTTGGATAGGGAAAATATT CTGTCTCGCTTGCTCAGAATAATGAATGGCAATTTGGGTGGAAAACTATGTAATAGAAACTGCTATGATCTAGTGTGAAA TAACAGTACTCAAACTAAAATCTTATGCAGTATATAATTTGGTGATATTTACAATATGCTAATTTTTCTTACAGGCTTGA AGCATGCAAGGATACTCTTAATAGTCAGGTCAATGTCCTAGCTTTCCTTCAAATGATGATACTACAAGAAGAAAACATGA TGTGAAAAAGTCTTGTATAACCGGTATCTGTTGTTTTAGTGGTGATTTTAGTTCTGTTGGAGTGTAGTTAGAGTTTAGAA TTTAATTATGTTTCGAAGTATGAAAGTTAGCAAATCCTAATTGGAATTAATATATTTTTTTTTTTTGTATCTTTATGTCT TTCCTCTTAATAGTATTCTTGTGTTAGCAGTTTTTCCCCTTTCTGTCTCTTAATTTACTGTTTTTTATTTATTTTATGTT CTGGCACATATATGTACGTTATGTTCACTTCACTATATGATTTGTTTTTTTATGTGTAAACAGAAAAAGGCCTTAATTGA GCCTGCAGATGAAAATGTTTGCAATGCATGCAGAGTGCATCATATGATATTAATTACTGTTCTCTAAGTTATGTATGCCA TGAGCCATCATGTGTTATTTGTAGTTAGAAACCAGGCAAATGCTGAAAAAGAACTATCTGTTGAAAAGTCTCATATTGAT TAGATATATGGCCTAATATGTCCTTATAAATGGGAGGGAAATTCTCATCTCTAGGCTAGCTTTTGGGGTAGAGTTAGGTC TAACCTGAATTCTAAGGCTATCAGTAGAAACTACATTGGTTTTGACAGGATTTTCATTTATGGATGCTGTAACTTTTCAA CAGGAAAGTAATGCTCTAGACATACTCAATAGAAATCCTATATGGTGCTGTACGTAGCTTGTATCTTCTCTAAGGCTTTA TTATTATTGCAGATGAAAAATAATGGATGGATGTAGAAAATCAGCTTGAAACTACTTAAATACATGGAAGATCATGTCTC TTGCCAGTAAATATATGATGCAAGGAAAGTGTGATACTGTTTCAGTTACTGGTTTGATGTTTACCAAGTCTACACTTTTT TTTATGATAATCTTTCTGCAGATAGCAAAGCTCTAGAATCTGGGATCAAGTGGTAGAGATGTATACTAACACCATAGCTT GAGAGTTGGACAAGTTTGTGCACTCTTTTCAAGGGCACACATACTAGAGTTGATTTTGTCTTGAAAGATATTGGTAATGG TAACCCACTCGCTCTATGATAATGTTTCAGGAAATGAATTTGAGACTTAGGGCCCGTTTGATGGTCAGGATAGGATATGA TAGGATATGATATGTGAACAGGATATCAACAGGATAGGATAAGACCAGGATAGACTCTTATCATATCCTGTGTTTGAGGT GCACATGATAATGACAGGATATGATAAGGAAAAATGTATCAGATTTATATTTGAATAAAAAATACATTTAAAATTGATCA TTCTATTAAATTTAATTTCTTTACATTTTCATGAATGAGTCTATATTTTAAAATAAATAAAATTAATTTAAATTTTATTA ATTAGCCTATTTTATTGTTTTGAAGATACCCTATATTTTAAATAAAATTATGCAGTTAACCGATTGGTTTTCACTTAGCT GTGACACGTGATAATTAACGATAAAAGTTAACTAAATTAAGAATATTATTATTTGAAAAGTAATTTATATTTGAATTATA AATTATTATATAAGTAGATAAGTAGTTTTAAATAATTGAAGATGAAAATAAAAAATTAATCTATTACTATTAAAAAATCA ATATTTGTAATCAATGTTTTTCACTTAGTTGTGACACGTGATAAACAATAAAAATTAACTAAATTAAAAATATTATTATT TCAAAAATACTTTATATTTAAATTATTATATAAGTAGATAAATAATTTTTAAATAATAGGAGATGAAAATATTAAATTAG TCTATTATTATTAATAAATCAATATTTGTAAGTGAGTAGTCTATTTTTACTATTTATGAATAATAATTTTATTTATTTTT TATTTTAGTTAAATTAATATTTTTATATTTATTAATTAATATTATTATAAATTATAAATTATATAATATTAAAATAAATT AATTTGGAGTTAAGATACTGAAAGAAAATATATAACTGGTATCCTATCCTGCTCTATCCTAGCTCCCCTCAGGATAACTT TTACACATGATTGACAGGATAGGATAGAAGACAGGATAGTGTTATCATATCCTGCTGGTGCAACAAACAACAGATAACAA CAGGATATGATTATTATCCTGTCCTATCCTATCCTATCCTATCCTGGTCACCAAACGGACCCTTACTGGTTTTAATGGGC TGTTGGATCAAAATAATAGTTGGAAAAAAAAGAGCTTGGTTGGATTTGCAAATTTTGTTTACCCAACACAAAAATAAAGG ATATGCAAAGTTTACAATTCATTGCAATTGCTGATTTTATTTTATCAGGTTAAATATGTTTTTCGTCCCTGAACTTTGAG CGAGATTTGGTATTCGTCCCTCGCCGGAGTAAAAGCCGAGATAGACCCCTAAACATAAGGGAAATAGTTGGTTTTAGTCC CTTCCGGGGTGGTGGCGCTGACCACCGCGGCCACATGTCACGACAAGCTACGATGATAATCTGGACCTATTATAATGTTT GACCTAACGTCTGCTCTTTTTGTCTTAGATAATGACATTTTAGATGTTAAATATTAAAACTTTTCAATTGTATGTAAGGT GTTTGATGTGCAGTTGAAGGAGAAATCAGTGATGGTTGTTAGCATGTACCTCTATATTCAATTTTACTTTTAGACAATGC TAATTGGTCCCGAAATTC
CDS sequence (LotjaGi1g1v0470300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCATGCAGCGACGCCGACGACGAAGGAGGAGCACGGCGGAGAACCCTTCGCTCTCTTCCGTTCTTCTCCCTGACGA GTTGATTGAAGCGATTCTGGTGAGACTACCAGTGAGTTCTCTTCTCCGATTCAAATCAGTGTGCAAATCGTGGCTCTCTG TAATTTCCGATCCCCAATTTGCGAAATCCCAATTTGACCTAGCTGCTTCACCCACCCACCGTCTCCTTCTCAGTGTCACT GATGACCTCAAATTCCAATCCTTAGACATTGATTCATCACCACCCAATGACGATGAATCTGCAGTGCTCAACTACCCGCG TGAACAGCAGCCTTATTCTCATGGTAATACTTTATTTTCTAGCCTTCGGGTCCTGGGTTCTTGCAGAGGGTTTCTACTTT TACTTTCACGTTCACCCAATCAACCAGGAGGTCATTTCATTGTGTGTAATCCATCAACGGGTTTCCATAGAAAAATTCCA TCATCTTATAGTTTTAGTGATTATACGCATTTTCAGTATGGTTTTGGGTATGATCAATCAACTGATGACTACTTGTTAGT TTCTATTAATTCGTTTCCCGGTGATCCTAGTTCTTCAATTAAGTTGTTTTCTTTGAAAACCAATTTAACATGCTCGCTGC CACTGGATAATGAATATCACTATCTCGATTGTGGTTGTCCAAGCGATTTGTTCTTACATGGGTCCCTTCATTGGTTGGTT ACGTCTAGAATTACGAGGCTTCATGTACTTCTTGCTTTTGATTTGGTAGGGAAGAGTTTATCAAAGATTGCTCAGTCACC TGATTTAGCTCAGCAGTTGAACAATAAACCATATGATTTAAGGGAGATGGCAGGATGTCTTGCTCTATGTTACTCTGCTT ATGGTGAAATGGCTGAAATGTGGATAATGAAAGAGTATAAAGTGCAATCATCTTGGACTAAGATTGTTTTCTCTACTCAT GATGAATCACCCTGCTTTTTTCCAATATGTTTCACTAAATGTGGTGATGTATTTGGATCAGATGAGTTTGGAAGATTATT GAGACTCAACGATAAAGGAAAGCTACTTCCAGTTTATCCGTGGGATTGGTCTTGGGAGAGCAGATATCGTCTATTATATA GTCGTATGTATACAGCAAGTATACTGTCACTCCCTAGTTAA
Protein sequence (LotjaGi1g1v0470300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMQRRRRRRRSTAENPSLSSVLLPDELIEAILVRLPVSSLLRFKSVCKSWLSVISDPQFAKSQFDLAASPTHRLLLSVT DDLKFQSLDIDSSPPNDDESAVLNYPREQQPYSHGNTLFSSLRVLGSCRGFLLLLSRSPNQPGGHFIVCNPSTGFHRKIP SSYSFSDYTHFQYGFGYDQSTDDYLLVSINSFPGDPSSSIKLFSLKTNLTCSLPLDNEYHYLDCGCPSDLFLHGSLHWLV TSRITRLHVLLAFDLVGKSLSKIAQSPDLAQQLNNKPYDLREMAGCLALCYSAYGEMAEMWIMKEYKVQSSWTKIVFSTH DESPCFFPICFTKCGDVFGSDEFGRLLRLNDKGKLLPVYPWDWSWESRYRLLYSRMYTASILSLPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 10 | 10 | - | – | |
| ProSiteProfiles | 18 | 64 | 47 | 10.928 | ||
| PANTHER | 21 | 363 | 343 | 1.5E-75 | – | |
| PANTHER | 21 | 363 | 343 | 1.5E-75 | – | |
| Gene3D | 23 | 60 | 38 | 6.2E-9 | – | |
| SUPERFAMILY | 23 | 91 | 69 | 1.1E-14 | ||
| SMART | 24 | 64 | 41 | 6.1E-6 | ||
| Pfam | 24 | 60 | 37 | 5.6E-9 | ||
| TIGRFAM | 127 | 319 | 193 | 2.9E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0470300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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