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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0497300 |
| Transcript ID | LotjaGi1g1v0497300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT3G28580.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9LJJ7|AATP9_ARATH AAA-ATPase At3g28580; TrEMBL-Plants: tr|V7B574|V7B574_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0497300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101274618..101276480) extracted from Lotus japonicus Gifu genome v1.2.
GTAGTAGTGAGTGGAGTGGAGTGTAGGCATGGGGGAACTATGGTCACAACTAGGCTCCTTAATAGCCACCACCATGTTTG TGTACGCCATGGTTGAGCGTTTTTTCCCTGCTGCACTACGTGACAGTCTTCAATTACAGACACAAAAAATGGTGAACCTT TTCTACCCTTATATCCAAATCACCTTCCCTGAATTCTCAGGTGAGAGGCTCAAGAGGAGTGAAGCTTACACTGCAATCCA AACATACCTCAGTGAAAACTCTTCCCAACTAGCCAAAAGGCTCAAAGCTGAAGTGGTGAAAGATAGCCAGAACCCATTGG TTCTCAGCGTAGATGATGATGAAGAGGTGACAGATGAGTTCCAAGGTGTTAAGCTATGGTGGGCTGCAAGCAAAATCGCC ACAAACCCGCAAGCTTATTCCTTCTCTTATTACACTCCCCTTGATGGGAAAAGATTCTACAAGCTCACTTTCCACAAGCA ACACAGAGATCTCATCACTGTGTCTTACATCAAACATGTCCTGCAACAAGGGAAGGAAATTGCCTTGAGAAATAGGCAGA GGAAGCTTTACACCAACAATCCAAGCAGGTACGAGCCATTTCACTTATAAACTGTTCAACATTTAATTTTATTTTTCAAT CCAATGTGAGACTTCTTTACTCACACTTGATCTCGCGGCAGTGGTTGGTATGGTTACAAGCAATCAAAGTGGAGCCACAT AGTTTTTGAGCACCCTGCAACTTTTGAGACACTTGCACTGGAGAAGAACAAGAAGGAGGAGATCATCAATGACCTTGTTA GGTTCAGAAATGGAAAAGACTACTATGCGAAAATTGGCAAGGCTTGGAAGCGTGGCTATTTACTCTTCGGTCCTCCGGGG ACCGGTAAGTCTACCATGATTGCCGCCATGGCTAATTTCATGAACTATGATGTGTATGATCTTGAATTGACTGCAGTTAA GGACAACACTGAGCTGAGGAAGCTCTTGATTGAAACTTCTAGCAAGGCTATTATAGTTGTGGAAGACATTGATTGCTCTC TTGATCTCACTGGTCAGAGGAAGATGATGAAGAAGGAGAAAAATGAGGAAGAAGAACCAAAAGAGTTATATCCTGGTAGA AAAAATGAAGAAGAGAATAGCAAAAGTAGTAAAGTAACTCTGTCTGGTTTATTGAATTTTATTGATGGTATTTGGTCAGC ATGTGGAGGAGAAAGGATCATCATTTTCACAACAAACTTTATAGAGAAACTTGATCCTGCTCTTATTAGGACAGGAAGGA TGGATAAACACATTGAATTGTCCTATTGTTGCTATGAAGCATTCAAGGTACTTGCTAAGAACTACTTGGATGTTGACTCA CACTATTTGTTTGCTAGAATTGCAAATTTGTTGGAAGTTACCAATATGACACCTGCTGATGTTGCTGAGAATCTGATATC TAAATCATTGAATGAAAATGTGGAGACTTGCTTGCTGACTTTGATTCAAGTTCTTGAGATGAAAATGGTAGAAGGAGAAA CAGGGTTAAAGGAAGAAAAAAACAAGCAAGATCCTACTCAAAAGGGGATGAAAAATAATGCACAAACTGTGGAAGATGTG AAGGAAAATGGCTTCATTCATTGAGTGGAAAAGATATTGATTGAGATTGTTACACTTGCTTGATGAAACATCAATTCAGC TGCATTATTAAAAGCTACAATCTCATATAGTTCAATTTGTGGTTGAAACATCTACTTAGCTATATTATTTTCTTGTTTTG TAAGTGACAAGTGATAATATCAATCACTTTCATTCACGCGTGCCTGTCATTCTATTTCAGAATTAGACATTTTGAAACAG CATCATACCTGGTTCAGGGTCTA
CDS sequence (LotjaGi1g1v0497300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGCCGCCATGGCTAATTTCATGAACTATGATGTGTATGATCTTGAATTGACTGCAGTTAAGGACAACACTGAGCT GAGGAAGCTCTTGATTGAAACTTCTAGCAAGGCTATTATAGTTGTGGAAGACATTGATTGCTCTCTTGATCTCACTGGTC AGAGGAAGATGATGAAGAAGGAGAAAAATGAGGAAGAAGAACCAAAAGAGTTATATCCTGGTAGAAAAAATGAAGAAGAG AATAGCAAAAGTAGTAAAGTAACTCTGTCTGGTTTATTGAATTTTATTGATGGTATTTGGTCAGCATGTGGAGGAGAAAG GATCATCATTTTCACAACAAACTTTATAGAGAAACTTGATCCTGCTCTTATTAGGACAGGAAGGATGGATAAACACATTG AATTGTCCTATTGTTGCTATGAAGCATTCAAGGTACTTGCTAAGAACTACTTGGATGTTGACTCACACTATTTGTTTGCT AGAATTGCAAATTTGTTGGAAGTTACCAATATGACACCTGCTGATGTTGCTGAGAATCTGATATCTAAATCATTGAATGA AAATGTGGAGACTTGCTTGCTGACTTTGATTCAAGTTCTTGAGATGAAAATGGTAGAAGGAGAAACAGGGTTAAAGGAAG AAAAAAACAAGCAAGATCCTACTCAAAAGGGGATGAAAAATAATGCACAAACTGTGGAAGATGTGAAGGAAAATGGCTTC ATTCATTGA
Protein sequence (LotjaGi1g1v0497300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIAAMANFMNYDVYDLELTAVKDNTELRKLLIETSSKAIIVVEDIDCSLDLTGQRKMMKKEKNEEEEPKELYPGRKNEEE NSKSSKVTLSGLLNFIDGIWSACGGERIIIFTTNFIEKLDPALIRTGRMDKHIELSYCCYEAFKVLAKNYLDVDSHYLFA RIANLLEVTNMTPADVAENLISKSLNENVETCLLTLIQVLEMKMVEGETGLKEEKNKQDPTQKGMKNNAQTVEDVKENGF IH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 234 | 234 | 7.2E-124 | – | |
| PANTHER | 1 | 234 | 234 | 7.2E-124 | – | |
| Gene3D | 1 | 137 | 137 | 6.1E-22 | – | |
| SUPERFAMILY | 2 | 183 | 182 | 5.5E-26 | ||
| MobiDBLite | 57 | 83 | 27 | - | – | |
| Pfam | 75 | 136 | 62 | 6.2E-7 | ||
| ProSitePatterns | 107 | 125 | 19 | - | ||
| MobiDBLite | 210 | 242 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0497300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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