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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003959
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 436 results. Now displaying 1 of 9 with 50 rows per page. This search has taken 5.853s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0058969.1
n.a. PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Fragaria vesca subsp]. vesca] gi|470128173|ref|XP_004300022.1| chr0 19474318 19479241 +
2 domain predictions
1 GO term
Lj0g3v0061699.1
n.a. PREDICTED: lon protease homolog 2, peroxisomal-like [Glycine max] gi|356563427|ref|XP_003549964.1| chr0 20680891 20689343 -
2 domain predictions
1 GO term
Lj0g3v0077349.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like [Glycine max] gi|356553056|ref|XP_003544874.1| chr0 29661584 29669624 +
2 domain predictions
1 GO term
Lj0g3v0104279.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like [Glycine max] gi|356568662|ref|XP_003552529.1| chr0 44583675 44585230 +
2 domain predictions
1 GO term
Lj0g3v0111639.1
n.a. rubisco activase [Glycine max] gi|290766481|gb|ADD60243.1| chr0 48502362 48506059 +
2 domain predictions
1 GO term
Lj0g3v0122529.1
n.a. PREDICTED: 26S proteasome regulatory subunit 4 homolog A-like [Glycine max] gi|356505102|ref|XP_003521331.1| chr0 54724839 54728135 +
2 domain predictions
1 GO term
Lj0g3v0125859.1
n.a. PREDICTED: cell division cycle protein 48 homolog [Cicer arietinum] gi|502121999|ref|XP_004497529.1| chr0 56582836 56586596 -
2 domain predictions
1 GO term
Lj0g3v0128589.1
n.a. PREDICTED: chaperone protein ClpB-like [Glycine max] gi|356551867|ref|XP_003544294.1| chr0 58091962 58096542 +
2 domain predictions
1 GO term
Lj0g3v0128589.2
n.a. PREDICTED: chaperone protein ClpB-like [Glycine max] gi|356551867|ref|XP_003544294.1| chr0 58092386 58096542 +
2 domain predictions
1 GO term
Lj0g3v0128589.3
n.a. PREDICTED: chaperone protein ClpB-like [Glycine max] gi|356551867|ref|XP_003544294.1| chr0 58093636 58096542 +
2 domain predictions
1 GO term
Lj0g3v0134599.1
n.a. PREDICTED: ATPase family AAA domain-containing protein 1-like [Solanum lycopersicum] gi|460390712|ref|XP_004240969.1| chr0 61757708 61765976 +
2 domain predictions
1 GO term
Lj0g3v0139779.1
n.a. PREDICTED: cell division control protein 48 homolog C-like [Cicer arietinum] gi|502123616|ref|XP_004498190.1| chr0 64041624 64047127 +
2 domain predictions
1 GO term
Lj0g3v0183909.1
n.a. PREDICTED: lon protease homolog 1, mitochondrial-like [Glycine max] gi|356533540|ref|XP_003535321.1| chr0 89371038 89383274 +
2 domain predictions
1 GO term
Lj0g3v0195169.1
n.a. PREDICTED: mitochondrial chaperone BCS1-like [Glycine max] gi|356571258|ref|XP_003553796.1| chr0 95220144 95222275 -
2 domain predictions
1 GO term
Lj0g3v0217929.1
n.a. Os06g0225900 [Oryza sativa Japonica Group] gi|297605428|ref|NP_001057200.2| chr0 111009332 111010309 +
2 domain predictions
1 GO term
Lj0g3v0238759.1
n.a. n.a. chr0 123901223 123902773 +
2 domain predictions
1 GO term
Lj0g3v0238769.1
n.a. PREDICTED: peroxisomal biogenesis factor 6-like, partial [Cucumis sativus] gi|449498547|ref|XP_004160567.1| chr0 123902037 123904301 -
2 domain predictions
1 GO term
Lj0g3v0249679.1
n.a. PREDICTED: ATPase family AAA domain-containing protein 1-A-like isoform X1 [Cicer arietinum] gi|502136490|ref|XP_004502708.1| chr0 129423658 129425088 -
2 domain predictions
1 GO term
Lj0g3v0249679.2
n.a. PREDICTED: ATPase family AAA domain-containing protein 1-A-like isoform X1 [Cicer arietinum] gi|502136490|ref|XP_004502708.1| chr0 129423658 129425088 -
2 domain predictions
1 GO term
Lj0g3v0250689.1
n.a. ATPase family AAA domain-containing protein 1-A isoform 2, partial [Theobroma cacao] gi|508775200|gb|EOY22456.1| chr0 129955004 129959211 -
2 domain predictions
1 GO term
Lj0g3v0250689.2
n.a. ATPase family AAA domain-containing protein 1-A isoform 1 [Theobroma cacao] gi|508775199|gb|EOY22455.1| chr0 129955004 129957281 -
2 domain predictions
1 GO term
Lj0g3v0258049.1
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 133969077 133974426 +
2 domain predictions
1 GO term
Lj0g3v0263339.1
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 136542223 136546874 +
2 domain predictions
1 GO term
Lj0g3v0263339.2
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 136544328 136546874 +
2 domain predictions
1 GO term
Lj0g3v0273379.1
n.a. PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Cicer arietinum] gi|502162893|ref|XP_004512653.1| chr0 141690230 141699140 +
2 domain predictions
1 GO term
Lj0g3v0273739.2
n.a. FTSH protease 12 isoform 2 [Theobroma cacao] gi|508722244|gb|EOY14141.1| chr0 141886606 141895230 -
2 domain predictions
1 GO term
Lj0g3v0291009.1
n.a. PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like isoform X1 [Cicer arietinum] gi|502136340|ref|XP_004502651.1| chr0 151058645 151063584 +
2 domain predictions
1 GO term
Lj0g3v0334159.1
n.a. PREDICTED: fidgetin-like protein 1-like [Glycine max] gi|356511805|ref|XP_003524613.1| chr0 174874264 174882338 -
2 domain predictions
1 GO term
Lj0g3v0334159.2
n.a. PREDICTED: fidgetin-like protein 1-like [Glycine max] gi|356571361|ref|XP_003553846.1| chr0 174874264 174882392 -
2 domain predictions
1 GO term
Lj0g3v0336539.1
n.a. PREDICTED: chaperone protein ClpB-like [Glycine max] gi|356551867|ref|XP_003544294.1| chr0 176238201 176241513 -
2 domain predictions
1 GO term
Lj0g3v0359209.1
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein [Theobroma cacao] gi|508776121|gb|EOY23377.1| chr0 189104385 189112362 -
2 domain predictions
1 GO term
Lj0g3v0359209.3
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein [Theobroma cacao] gi|508776121|gb|EOY23377.1| chr0 189104385 189109494 -
2 domain predictions
1 GO term
Lj0g3v0359309.1
n.a. PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Glycine max] gi|356512187|ref|XP_003524802.1| chr0 189164383 189164984 +
2 domain predictions
1 GO term
Lj0g3v0364339.1
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 192236957 192242306 +
2 domain predictions
1 GO term
Lj1g3v0307940.1
n.a. Thyroid receptor-interacting protein [Medicago truncatula] gi|357461801|ref|XP_003601182.1| chr1 3557468 3560882 -
2 domain predictions
1 GO term
Lj1g3v0307940.2
n.a. PREDICTED: pachytene checkpoint protein 2 homolog [Cicer arietinum] gi|502133733|ref|XP_004501872.1| chr1 3557468 3564787 -
2 domain predictions
1 GO term
Lj1g3v0342010.1
n.a. PREDICTED: cell division cycle protein 48 homolog [Glycine max] gi|356508699|ref|XP_003523092.1| chr1 4106123 4116038 -
2 domain predictions
1 GO term
Lj1g3v0812930.1
n.a. Replication factor C large subunit [Medicago truncatula] gi|357438631|ref|XP_003589591.1| chr1 10668442 10678590 +
2 domain predictions
1 GO term
Lj1g3v0827060.1
n.a. PREDICTED: replication factor C subunit 5-like [Glycine max] gi|356515902|ref|XP_003526636.1| chr1 10749307 10755129 -
2 domain predictions
1 GO term
Lj1g3v0874130.1
n.a. PREDICTED: replication factor C subunit 4-like [Cicer arietinum] gi|502135976|ref|XP_004502518.1| chr1 11101036 11102854 -
2 domain predictions
1 GO term
Lj1g3v0948570.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502124127|ref|XP_004498398.1| chr1 11885945 11900091 +
2 domain predictions
1 GO term
Lj1g3v1032230.1
n.a. Mitochondrial chaperone BCS1 [Medicago truncatula] gi|357464059|ref|XP_003602311.1| chr1 12952605 12954669 -
2 domain predictions
1 GO term
Lj1g3v1303750.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FtsH-like [Glycine max] gi|356518757|ref|XP_003528044.1| chr1 15660747 15667307 -
2 domain predictions
1 GO term
Lj1g3v1303760.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FtsH-like [Glycine max] gi|356518757|ref|XP_003528044.1| chr1 15667301 15670657 -
2 domain predictions
1 GO term
Lj1g3v1386490.1
n.a. PREDICTED: chaperone protein ClpD, chloroplastic-like [Glycine max] gi|356507402|ref|XP_003522456.1| chr1 16966735 16973035 -
3 domain predictions
1 GO term
Lj1g3v1453970.1
n.a. PREDICTED: chaperone protein ClpC, chloroplastic-like [Glycine max] gi|356516495|ref|XP_003526929.1| chr1 17432411 17438293 +
2 domain predictions
1 GO term
Lj1g3v1453980.1
n.a. ATP-dependent CLP protease [Solanum tuberosum] gi|38639313|gb|AAR25794.1| chr1 17438408 17438688 +
2 domain predictions
1 GO term
Lj1g3v1453990.1
n.a. ATP-dependent Clp protease ATP-binding subunit-like protein, partial [Cyrtandra longifolia] gi|512795044|gb|AGO06529.1| chr1 17438648 17438769 +
2 domain predictions
1 GO term
Lj1g3v1454000.1
n.a. ATP-dependent Clp protease ATP-binding subunit clpA-like protein CD4B, chloroplastic [Triticum urartu] gi|474072489|gb|EMS54415.1| chr1 17438716 17439200 +
2 domain predictions
1 GO term
Lj1g3v1720090.1
n.a. 26S protease regulatory subunit 8 [Entamoeba histolytica HM]-1:IMSS] gi|183237345|ref|XP_001914603.1| chr1 20212044 20219012 +
2 domain predictions
1 GO term