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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF00004
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 413 results. Now displaying 1 of 9 with 50 rows per page. This search has taken 0.179s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0061699.1
n.a. PREDICTED: lon protease homolog 2, peroxisomal-like [Glycine max] gi|356563427|ref|XP_003549964.1| chr0 20680891 20689343 -
2 domain predictions
1 GO term
Lj0g3v0077349.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like [Glycine max] gi|356553056|ref|XP_003544874.1| chr0 29661584 29669624 +
2 domain predictions
1 GO term
Lj0g3v0104279.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like [Glycine max] gi|356568662|ref|XP_003552529.1| chr0 44583675 44585230 +
2 domain predictions
1 GO term
Lj0g3v0111639.1
n.a. rubisco activase [Glycine max] gi|290766481|gb|ADD60243.1| chr0 48502362 48506059 +
2 domain predictions
1 GO term
Lj0g3v0122529.1
n.a. PREDICTED: 26S proteasome regulatory subunit 4 homolog A-like [Glycine max] gi|356505102|ref|XP_003521331.1| chr0 54724839 54728135 +
2 domain predictions
1 GO term
Lj0g3v0125859.1
n.a. PREDICTED: cell division cycle protein 48 homolog [Cicer arietinum] gi|502121999|ref|XP_004497529.1| chr0 56582836 56586596 -
2 domain predictions
1 GO term
Lj0g3v0134599.1
n.a. PREDICTED: ATPase family AAA domain-containing protein 1-like [Solanum lycopersicum] gi|460390712|ref|XP_004240969.1| chr0 61757708 61765976 +
2 domain predictions
1 GO term
Lj0g3v0139779.1
n.a. PREDICTED: cell division control protein 48 homolog C-like [Cicer arietinum] gi|502123616|ref|XP_004498190.1| chr0 64041624 64047127 +
2 domain predictions
1 GO term
Lj0g3v0183909.1
n.a. PREDICTED: lon protease homolog 1, mitochondrial-like [Glycine max] gi|356533540|ref|XP_003535321.1| chr0 89371038 89383274 +
2 domain predictions
1 GO term
Lj0g3v0195169.1
n.a. PREDICTED: mitochondrial chaperone BCS1-like [Glycine max] gi|356571258|ref|XP_003553796.1| chr0 95220144 95222275 -
2 domain predictions
1 GO term
Lj0g3v0217929.1
n.a. Os06g0225900 [Oryza sativa Japonica Group] gi|297605428|ref|NP_001057200.2| chr0 111009332 111010309 +
2 domain predictions
1 GO term
Lj0g3v0238759.1
n.a. n.a. chr0 123901223 123902773 +
2 domain predictions
1 GO term
Lj0g3v0238769.1
n.a. PREDICTED: peroxisomal biogenesis factor 6-like, partial [Cucumis sativus] gi|449498547|ref|XP_004160567.1| chr0 123902037 123904301 -
2 domain predictions
1 GO term
Lj0g3v0249679.1
n.a. PREDICTED: ATPase family AAA domain-containing protein 1-A-like isoform X1 [Cicer arietinum] gi|502136490|ref|XP_004502708.1| chr0 129423658 129425088 -
2 domain predictions
1 GO term
Lj0g3v0249679.2
n.a. PREDICTED: ATPase family AAA domain-containing protein 1-A-like isoform X1 [Cicer arietinum] gi|502136490|ref|XP_004502708.1| chr0 129423658 129425088 -
2 domain predictions
1 GO term
Lj0g3v0250689.1
n.a. ATPase family AAA domain-containing protein 1-A isoform 2, partial [Theobroma cacao] gi|508775200|gb|EOY22456.1| chr0 129955004 129959211 -
2 domain predictions
1 GO term
Lj0g3v0250689.2
n.a. ATPase family AAA domain-containing protein 1-A isoform 1 [Theobroma cacao] gi|508775199|gb|EOY22455.1| chr0 129955004 129957281 -
2 domain predictions
1 GO term
Lj0g3v0258049.1
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 133969077 133974426 +
2 domain predictions
1 GO term
Lj0g3v0263339.1
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 136542223 136546874 +
2 domain predictions
1 GO term
Lj0g3v0263339.2
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 136544328 136546874 +
2 domain predictions
1 GO term
Lj0g3v0273739.2
n.a. FTSH protease 12 isoform 2 [Theobroma cacao] gi|508722244|gb|EOY14141.1| chr0 141886606 141895230 -
2 domain predictions
1 GO term
Lj0g3v0334159.1
n.a. PREDICTED: fidgetin-like protein 1-like [Glycine max] gi|356511805|ref|XP_003524613.1| chr0 174874264 174882338 -
2 domain predictions
1 GO term
Lj0g3v0334159.2
n.a. PREDICTED: fidgetin-like protein 1-like [Glycine max] gi|356571361|ref|XP_003553846.1| chr0 174874264 174882392 -
2 domain predictions
1 GO term
Lj0g3v0359209.1
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein [Theobroma cacao] gi|508776121|gb|EOY23377.1| chr0 189104385 189112362 -
2 domain predictions
1 GO term
Lj0g3v0359209.3
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein [Theobroma cacao] gi|508776121|gb|EOY23377.1| chr0 189104385 189109494 -
2 domain predictions
1 GO term
Lj0g3v0359309.1
n.a. PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Glycine max] gi|356512187|ref|XP_003524802.1| chr0 189164383 189164984 +
2 domain predictions
1 GO term
Lj0g3v0364339.1
n.a. PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1| chr0 192236957 192242306 +
2 domain predictions
1 GO term
Lj1g3v0307940.1
n.a. Thyroid receptor-interacting protein [Medicago truncatula] gi|357461801|ref|XP_003601182.1| chr1 3557468 3560882 -
2 domain predictions
1 GO term
Lj1g3v0307940.2
n.a. PREDICTED: pachytene checkpoint protein 2 homolog [Cicer arietinum] gi|502133733|ref|XP_004501872.1| chr1 3557468 3564787 -
2 domain predictions
1 GO term
Lj1g3v0342010.1
n.a. PREDICTED: cell division cycle protein 48 homolog [Glycine max] gi|356508699|ref|XP_003523092.1| chr1 4106123 4116038 -
2 domain predictions
1 GO term
Lj1g3v0812930.1
n.a. Replication factor C large subunit [Medicago truncatula] gi|357438631|ref|XP_003589591.1| chr1 10668442 10678590 +
2 domain predictions
1 GO term
Lj1g3v0827060.1
n.a. PREDICTED: replication factor C subunit 5-like [Glycine max] gi|356515902|ref|XP_003526636.1| chr1 10749307 10755129 -
2 domain predictions
1 GO term
Lj1g3v0874130.1
n.a. PREDICTED: replication factor C subunit 4-like [Cicer arietinum] gi|502135976|ref|XP_004502518.1| chr1 11101036 11102854 -
2 domain predictions
1 GO term
Lj1g3v0948570.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502124127|ref|XP_004498398.1| chr1 11885945 11900091 +
2 domain predictions
1 GO term
Lj1g3v1032230.1
n.a. Mitochondrial chaperone BCS1 [Medicago truncatula] gi|357464059|ref|XP_003602311.1| chr1 12952605 12954669 -
2 domain predictions
1 GO term
Lj1g3v1303750.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FtsH-like [Glycine max] gi|356518757|ref|XP_003528044.1| chr1 15660747 15667307 -
2 domain predictions
1 GO term
Lj1g3v1303760.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FtsH-like [Glycine max] gi|356518757|ref|XP_003528044.1| chr1 15667301 15670657 -
2 domain predictions
1 GO term
Lj1g3v1386490.1
n.a. PREDICTED: chaperone protein ClpD, chloroplastic-like [Glycine max] gi|356507402|ref|XP_003522456.1| chr1 16966735 16973035 -
2 domain predictions
1 GO term
Lj1g3v1453970.1
n.a. PREDICTED: chaperone protein ClpC, chloroplastic-like [Glycine max] gi|356516495|ref|XP_003526929.1| chr1 17432411 17438293 +
2 domain predictions
1 GO term
Lj1g3v1720090.1
n.a. 26S protease regulatory subunit 8 [Entamoeba histolytica HM]-1:IMSS] gi|183237345|ref|XP_001914603.1| chr1 20212044 20219012 +
2 domain predictions
1 GO term
Lj1g3v1786070.1
n.a. Cell division protease ftsH-like protein [Medicago truncatula] gi|357465741|ref|XP_003603155.1| chr1 20951976 20962824 -
2 domain predictions
1 GO term
Lj1g3v1786070.3
n.a. Cell division protease ftsH-like protein [Medicago truncatula] gi|357465741|ref|XP_003603155.1| chr1 20951976 20978167 -
2 domain predictions
1 GO term
Lj1g3v1786340.1
n.a. Cell division protease ftsH-like protein [Medicago truncatula] gi|357491483|ref|XP_003616029.1| chr1 21047777 21051700 -
2 domain predictions
1 GO term
Lj1g3v1787470.1
n.a. protease FtsH-like protein 4 [Brachypodium distachyon] gi|255316772|gb|ACU01771.1| chr1 21120585 21123984 -
2 domain predictions
1 GO term
Lj1g3v1818790.1
n.a. n.a. chr1 22133777 22139250 -
2 domain predictions
1 GO term
Lj1g3v1818790.2
n.a. PREDICTED: chaperone protein ClpB4, mitochondrial-like [Cicer arietinum] gi|502132470|ref|XP_004501376.1| chr1 22133777 22140923 -
2 domain predictions
1 GO term
Lj1g3v2268450.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic-like [Cicer arietinum] gi|502131153|ref|XP_004500893.1| chr1 26729581 26733197 +
2 domain predictions
1 GO term
Lj1g3v2583420.1
n.a. PREDICTED: spastin-like [Glycine max] gi|356568294|ref|XP_003552348.1| chr1 29837995 29843702 +
2 domain predictions
1 GO term
Lj1g3v2583420.2
n.a. PREDICTED: spastin-like [Glycine max] gi|356568294|ref|XP_003552348.1| chr1 29837995 29843702 +
2 domain predictions
1 GO term
Lj1g3v2940710.1
n.a. PREDICTED: mitochondrial respiratory chain complexes assembly protein rca1-like [Glycine max] gi|356531806|ref|XP_003534467.1| chr1 33274139 33276025 +
2 domain predictions
1 GO term