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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0505000 |
| Transcript ID | LotjaGi1g1v0505000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin protein; TAIR: AT3G29030.1 expansin A5; Swiss-Prot: sp|Q38864|EXPA5_ARATH Expansin-A5; TrEMBL-Plants: tr|G7L212|G7L212_MEDTR Expansin A10; Found in the gene: LotjaGi1g1v0505000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102290501..102292127) extracted from Lotus japonicus Gifu genome v1.2.
CATGCCACTTTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTATGTCTGCACAAATGTAACTCACATTAAGTTTTTC ATAGTTGTGCTTAGGTTCTTTACTCTCTGCATAACATCAATATAGGCGTACTTTAGGCTCTTCTTAAAACTCGGCTTATG CCTTACTCAACCCAAAAAGCTAGCTTAGGGTAAAGACTGTTCTACTCTATATAAACACTTATCTAGTCACATGTTCCGCC AACACGAGACTTCTCAATAGTTATTAATGATTCATAACATCTATTTATGTCAAATTTGTAGGTGGGGCTTGTGGGTATGG AAATCTAATCAGCCAAGGTTATGGAACTAATACAGCAGCACTTAGCACTGCATTGTTCAACAGTGGCTTGAGCTGTGGAG CATGTTTTCAAATTAAATGTGTGAATGACCCTCAATGGTGCCTTCCTGGTTCCATTGTAGTCACTGCCACCAATTTCTGC CCACCAGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTATTTTCCAGCACATTGCACAATATAA GGCTGGGATTGTACCTGTAGCATACAGAAGGTAACTTCAGATTCTCATTTCCTTTTACCAGAGCCATTTAGTGCATGTTT GGTTACACAACGCTCATCCACATACGTACTTGTAATATTCTCAAACGTGGTTTTTCGTTATCAGAACATGTTGGGTAAAA TTCTTAGAAACACTTCAGTCGAACAAAACAATGTTCAGGCTAAAGCAAAAAGACCAAACTTTTGAGTTAACATGAAAGTA CTTTTAGCTCTTCTCACAAGACATTTCTATTATTTTCCTATAAAAATCACTTTGCCAGAAAATGTATACATATCAATCAC ATCACTTTCAAATCACCTATACCATATCAATTTTGCCGAATCAATTCTATCCAAAATTACTTTTGTCAATGTTTAGTCCG TGTTTGGATCAACGCTAACATAATTGATTCTAGTAAAATTGCGTATGATAAATATGAGCTAAAATAATGTAATTTATGTT TGGTTACATTTATGAAAAAAGTGACTTTTGTAGAGTAGTATTGTGAAATTCAGTTGTAAAATCTTAGAGCTGATGATATT CAACACAAAAACTACTCTTCTTAGCTTCTATCAGAACAGAACTGAGACTGAAATCAATTCTCCAAAACTGATTTTGCTTT AACAGAATTTTGATTCTAAAGTTCCCTAATGTGGAACCAAATACACTCTAAACATGTACCAACTTTTGGCCTTGAAGCTG AAATTCTTATTTTTTTTCTCGTTCGTGGATTTTGAAGGGTAAGATGCAGGAGAAAAGATGGCATCAGGTTCACCATCAAT GGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATGCTGTGGCCATCAAAGGTTC AAGAACAAGATGGCAGGCCATGTCAAGGAACTGGGGGCAAAACTGGCAGAGCAACTCTTACCTGAATGGACAGAGTCTTT CCTTTGTAGTCACCACCAGTAATGGCCACAGCGTGGTCTCCTTCAATGTTGCCCCAGCTAGTTGGTCCTTTGGGCAGACC TACACTGGAAGACAGTTCAACTACTAA
CDS sequence (LotjaGi1g1v0505000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGGGCTTGTGGGTATGGAAATCTAATCAGCCAAGGTTATGGAACTAATACAGCAGCACTTAGCACTGCATTGTT CAACAGTGGCTTGAGCTGTGGAGCATGTTTTCAAATTAAATGTGTGAATGACCCTCAATGGTGCCTTCCTGGTTCCATTG TAGTCACTGCCACCAATTTCTGCCCACCAGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTATT TTCCAGCACATTGCACAATATAAGGCTGGGATTGTACCTGTAGCATACAGAAGGGTAAGATGCAGGAGAAAAGATGGCAT CAGGTTCACCATCAATGGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATGCTG TGGCCATCAAAGGTTCAAGAACAAGATGGCAGGCCATGTCAAGGAACTGGGGGCAAAACTGGCAGAGCAACTCTTACCTG AATGGACAGAGTCTTTCCTTTGTAGTCACCACCAGTAATGGCCACAGCGTGGTCTCCTTCAATGTTGCCCCAGCTAGTTG GTCCTTTGGGCAGACCTACACTGGAAGACAGTTCAACTACTAA
Protein sequence (LotjaGi1g1v0505000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGACGYGNLISQGYGTNTAALSTALFNSGLSCGACFQIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPI FQHIAQYKAGIVPVAYRRVRCRRKDGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSYL NGQSLSFVVTTSNGHSVVSFNVAPASWSFGQTYTGRQFNY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 199 | 199 | 8.8E-134 | – | |
| SUPERFAMILY | 1 | 124 | 124 | 4.88E-47 | ||
| PRINTS | 1 | 19 | 19 | 5.5E-41 | ||
| Gene3D | 1 | 102 | 102 | 1.6E-35 | ||
| PANTHER | 1 | 199 | 199 | 8.8E-134 | – | |
| ProSiteProfiles | 2 | 106 | 105 | 30.094 | ||
| PRINTS | 14 | 28 | 15 | 2.9E-81 | ||
| Pfam | 19 | 96 | 78 | 2.5E-24 | ||
| SMART | 19 | 96 | 78 | 1.3E-47 | ||
| PRINTS | 23 | 41 | 19 | 5.5E-41 | ||
| PRINTS | 41 | 52 | 12 | 2.9E-81 | ||
| PRINTS | 53 | 63 | 11 | 2.9E-81 | ||
| PRINTS | 64 | 81 | 18 | 2.9E-81 | ||
| PRINTS | 81 | 94 | 14 | 2.9E-81 | ||
| PRINTS | 89 | 105 | 17 | 5.5E-41 | ||
| SUPERFAMILY | 104 | 195 | 92 | 6.28E-34 | ||
| PRINTS | 105 | 117 | 13 | 2.9E-81 | ||
| Gene3D | 106 | 199 | 94 | 2.7E-24 | ||
| Pfam | 107 | 184 | 78 | 1.8E-28 | ||
| ProSiteProfiles | 116 | 195 | 80 | 22.068 | ||
| PRINTS | 117 | 138 | 22 | 2.9E-81 | ||
| PRINTS | 143 | 157 | 15 | 5.5E-41 | ||
| PRINTS | 152 | 173 | 22 | 2.9E-81 | ||
| PRINTS | 181 | 197 | 17 | 2.9E-81 | ||
| PRINTS | 181 | 195 | 15 | 5.5E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi1g1v0505000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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