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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036908
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 76 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.486s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0089200.1
n.a. Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|G7KBR7|G7KBR7_MEDTR Expansin A10; Found in the gene: LotjaGi1g1v0089200 LjG1.1_chr1 13016756 13021748 +
3 domain predictions
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LotjaGi1g1v0089200.3
n.a. Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|A0A151S197|A0A151S197_CAJCA Expansin-A4; Found in the gene: LotjaGi1g1v0089200 LjG1.1_chr1 13017297 13021249 +
2 domain predictions
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LotjaGi1g1v0099800.1
n.a. Expansin; TAIR: AT3G03220.1 expansin A13; Swiss-Prot: sp|Q9M9P0|EXP13_ARATH Expansin-A13; TrEMBL-Plants: tr|I1JHS2|I1JHS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0099800 LjG1.1_chr1 15205821 15209754 +
3 domain predictions
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LotjaGi1g1v0106800.1
n.a. Expansin; TAIR: AT2G40610.1 expansin A8; Swiss-Prot: sp|O22874|EXPA8_ARATH Expansin-A8; TrEMBL-Plants: tr|I1JHL8|I1JHL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0106800 LjG1.1_chr1 16592810 16596030 +
3 domain predictions
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LotjaGi1g1v0106800.2
n.a. Expansin; TAIR: AT2G40610.1 expansin A8; Swiss-Prot: sp|O22874|EXPA8_ARATH Expansin-A8; TrEMBL-Plants: tr|I1JHL8|I1JHL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0106800 LjG1.1_chr1 16593036 16594860 +
3 domain predictions
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LotjaGi1g1v0220500.1
n.a. Expansin; TAIR: AT1G69530.1 expansin A1; Swiss-Prot: sp|Q9C554|EXPA1_ARATH Expansin-A1; TrEMBL-Plants: tr|A0A151RX84|A0A151RX84_CAJCA Expansin-A15; Found in the gene: LotjaGi1g1v0220500 LjG1.1_chr1 49031313 49034088 +
3 domain predictions
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LotjaGi1g1v0220500.2
n.a. Expansin; TAIR: AT1G69530.4 expansin A1; Swiss-Prot: sp|O80622|EXP15_ARATH Expansin-A15; TrEMBL-Plants: tr|A0A151RX84|A0A151RX84_CAJCA Expansin-A15; Found in the gene: LotjaGi1g1v0220500 LjG1.1_chr1 49031565 49033378 +
3 domain predictions
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LotjaGi1g1v0307600.1
n.a. Expansin; TAIR: AT2G40610.1 expansin A8; Swiss-Prot: sp|O22874|EXPA8_ARATH Expansin-A8; TrEMBL-Plants: tr|A0A072VBI6|A0A072VBI6_MEDTR Expansin A10; Found in the gene: LotjaGi1g1v0307600 LjG1.1_chr1 74865322 74867208 +
3 domain predictions
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LotjaGi1g1v0385100.1
n.a. Blight-associated protein P12; TAIR: AT2G18660.1 plant natriuretic peptide A; Swiss-Prot: sp|Q9ZP41|EGC_CITJA EG45-like domain containing protein; TrEMBL-Plants: tr|I3T6R7|I3T6R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0385100 LjG1.1_chr1 86896930 86898395 -
3 domain predictions
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LotjaGi1g1v0387300_LC.1
n.a. EG45-like domain containing protein; TAIR: AT4G30380.2 Barwin-related endoglucanase; Swiss-Prot: sp|Q9ZP41|EGC_CITJA EG45-like domain containing protein; TrEMBL-Plants: tr|I1K8Y4|I1K8Y4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387300_LC LjG1.1_chr1 87060539 87064798 +
3 domain predictions
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LotjaGi1g1v0474200.1
n.a. Ripening related protein family; Swiss-Prot: sp|Q6H5X0|RIP2_ORYSJ Putative ripening-related protein 2; TrEMBL-Plants: tr|G7L3L5|G7L3L5_MEDTR Ripening related protein family; Found in the gene: LotjaGi1g1v0474200 LjG1.1_chr1 98449426 98450489 -
3 domain predictions
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LotjaGi1g1v0474300.1
n.a. Ripening related protein family; TAIR: AT3G29030.1 expansin A5; Swiss-Prot: sp|Q6H5X0|RIP2_ORYSJ Putative ripening-related protein 2; TrEMBL-Plants: tr|G7L460|G7L460_MEDTR Ripening related protein family; Found in the gene: LotjaGi1g1v0474300 LjG1.1_chr1 98453321 98453887 -
3 domain predictions
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LotjaGi1g1v0474300.2
n.a. Ripening related protein family; TAIR: AT3G29030.1 expansin A5; Swiss-Prot: sp|Q6H5X0|RIP2_ORYSJ Putative ripening-related protein 2; TrEMBL-Plants: tr|K4AZI6|K4AZI6_SOLLC Uncharacterized protein; Found in the gene: LotjaGi1g1v0474300 LjG1.1_chr1 98453321 98456813 -
3 domain predictions
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LotjaGi1g1v0474300.3
n.a. Ripening related protein family; Swiss-Prot: sp|Q6H5X0|RIP2_ORYSJ Putative ripening-related protein 2; TrEMBL-Plants: tr|G7L460|G7L460_MEDTR Ripening related protein family; Found in the gene: LotjaGi1g1v0474300 LjG1.1_chr1 98456247 98456813 -
3 domain predictions
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LotjaGi1g1v0474400.1
n.a. Ripening related protein family; TAIR: AT3G29030.1 expansin A5; Swiss-Prot: sp|Q6H5X0|RIP2_ORYSJ Putative ripening-related protein 2; TrEMBL-Plants: tr|A0A0L9U3Z3|A0A0L9U3Z3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0474400 LjG1.1_chr1 98463784 98464176 -
3 domain predictions
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LotjaGi1g1v0505000.1
n.a. Expansin protein; TAIR: AT1G69530.1 expansin A1; Swiss-Prot: sp|Q9C554|EXPA1_ARATH Expansin-A1; TrEMBL-Plants: tr|G7L212|G7L212_MEDTR Expansin A10; Found in the gene: LotjaGi1g1v0505000 LjG1.1_chr1 102289912 102292458 -
3 domain predictions
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LotjaGi1g1v0505000.2
n.a. Expansin protein; TAIR: AT1G69530.1 expansin A1; Swiss-Prot: sp|Q9C554|EXPA1_ARATH Expansin-A1; TrEMBL-Plants: tr|G7L212|G7L212_MEDTR Expansin A10; Found in the gene: LotjaGi1g1v0505000 LjG1.1_chr1 102289973 102292524 -
3 domain predictions
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LotjaGi1g1v0505000.3
n.a. Expansin protein; TAIR: AT3G29030.1 expansin A5; Swiss-Prot: sp|Q38864|EXPA5_ARATH Expansin-A5; TrEMBL-Plants: tr|G7L212|G7L212_MEDTR Expansin A10; Found in the gene: LotjaGi1g1v0505000 LjG1.1_chr1 102290501 102292127 -
3 domain predictions
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LotjaGi1g1v0510200.1
n.a. Expansin; TAIR: AT5G39280.1 expansin A23; Swiss-Prot: sp|Q9FL79|EXP23_ARATH Expansin-A23; TrEMBL-Plants: tr|I3SEA3|I3SEA3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0510200 LjG1.1_chr1 102888613 102889787 +
3 domain predictions
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LotjaGi1g1v0510300.1
n.a. Expansin; TAIR: AT5G39280.1 expansin A23; Swiss-Prot: sp|Q9FL79|EXP23_ARATH Expansin-A23; TrEMBL-Plants: tr|I3SEA3|I3SEA3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0510300 LjG1.1_chr1 102946788 102948022 +
3 domain predictions
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LotjaGi1g1v0510400.1
n.a. Expansin; TAIR: AT5G39280.1 expansin A23; Swiss-Prot: sp|Q9FL79|EXP23_ARATH Expansin-A23; TrEMBL-Plants: tr|A0A151TCF6|A0A151TCF6_CAJCA Expansin-A22; Found in the gene: LotjaGi1g1v0510400 LjG1.1_chr1 102966960 102967654 +
2 domain predictions
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LotjaGi1g1v0510600.1
n.a. Expansin; TAIR: AT5G39280.1 expansin A23; Swiss-Prot: sp|Q9FL79|EXP23_ARATH Expansin-A23; TrEMBL-Plants: tr|I3SEA3|I3SEA3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0510600 LjG1.1_chr1 102982012 102983398 +
3 domain predictions
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LotjaGi1g1v0510700.1
n.a. Expansin; TAIR: AT5G39280.1 expansin A23; Swiss-Prot: sp|Q9FL79|EXP23_ARATH Expansin-A23; TrEMBL-Plants: tr|I3SEA3|I3SEA3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0510700 LjG1.1_chr1 103018418 103020313 +
3 domain predictions
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LotjaGi1g1v0575800.1
n.a. Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|A0A151TMA5|A0A151TMA5_CAJCA Expansin-A4; Found in the gene: LotjaGi1g1v0575800 LjG1.1_chr1 111264376 111273185 -
3 domain predictions
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LotjaGi1g1v0575800.2
n.a. Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|Q852A1|EXPA7_ORYSJ Expansin-A7; TrEMBL-Plants: tr|G9FTF9|G9FTF9_SOYBN Expansin A5a; Found in the gene: LotjaGi1g1v0575800 LjG1.1_chr1 111271293 111272717 -
2 domain predictions
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LotjaGi1g1v0575800.3
n.a. Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|A0A151TMA5|A0A151TMA5_CAJCA Expansin-A4; Found in the gene: LotjaGi1g1v0575800 LjG1.1_chr1 111271293 111272875 -
3 domain predictions
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LotjaGi1g1v0580000.1
n.a. Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|A0A0R0JDM2|A0A0R0JDM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0580000 LjG1.1_chr1 111942723 111944897 +
3 domain predictions
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LotjaGi1g1v0580000.2
n.a. Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|A0A0R0JDM2|A0A0R0JDM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0580000 LjG1.1_chr1 111942771 111945457 +
3 domain predictions
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LotjaGi1g1v0580000.3
n.a. Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|Q41043|Q41043_PEA Orf protein; Found in the gene: LotjaGi1g1v0580000 LjG1.1_chr1 111942894 111944897 +
3 domain predictions
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LotjaGi1g1v0580000.4
n.a. Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|Q41043|Q41043_PEA Orf protein; Found in the gene: LotjaGi1g1v0580000 LjG1.1_chr1 111943160 111944897 +
3 domain predictions
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LotjaGi1g1v0606600.1
n.a. Expansin protein; TAIR: AT1G65680.1 expansin B2; Swiss-Prot: sp|Q9SHY6|EXPB2_ARATH Putative expansin-B2; TrEMBL-Plants: tr|I3T7U9|I3T7U9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0606600 LjG1.1_chr1 115152786 115154915 -
3 domain predictions
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LotjaGi1g1v0685400.1
n.a. Expansin; TAIR: AT5G02260.1 expansin A9; Swiss-Prot: sp|Q9LZ99|EXPA9_ARATH Expansin-A9; TrEMBL-Plants: tr|A0A0B2NZ29|A0A0B2NZ29_GLYSO Expansin-A16; Found in the gene: LotjaGi1g1v0685400 LjG1.1_chr1 125229092 125232714 +
3 domain predictions
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LotjaGi1g1v0782000.1
n.a. Pathogenesis-related protein PR-4; TAIR: AT3G04720.1 pathogenesis-related 4; Swiss-Prot: sp|P09762|WIN2_SOLTU Wound-induced protein WIN2; TrEMBL-Plants: tr|I3T7R4|I3T7R4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0782000 LjG1.1_chr1 135517191 135519462 +
3 domain predictions
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LotjaGi1g1v0782200.1
n.a. Pathogenesis-related protein PR-4; TAIR: AT3G04720.1 pathogenesis-related 4; Swiss-Prot: sp|P32045|PRP2_SOLLC Pathogenesis-related protein P2; TrEMBL-Plants: tr|C6T2R0|C6T2R0_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0782200 LjG1.1_chr1 135526494 135527914 +
3 domain predictions
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LotjaGi2g1v0171300.1
n.a. Ripening related protein family; Swiss-Prot: sp|Q6H5X0|RIP2_ORYSJ Putative ripening-related protein 2; TrEMBL-Plants: tr|G7L460|G7L460_MEDTR Ripening related protein family; Found in the gene: LotjaGi2g1v0171300 LjG1.1_chr2 58668616 58669182 +
3 domain predictions
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LotjaGi2g1v0260200.1
n.a. Expansin protein; TAIR: AT2G03090.1 expansin A15; Swiss-Prot: sp|O80622|EXP15_ARATH Expansin-A15; TrEMBL-Plants: tr|I1N660|I1N660_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0260200 LjG1.1_chr2 72813372 72815792 -
3 domain predictions
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LotjaGi2g1v0260200.2
n.a. Expansin protein; TAIR: AT2G03090.1 expansin A15; Swiss-Prot: sp|O80622|EXP15_ARATH Expansin-A15; TrEMBL-Plants: tr|I1N660|I1N660_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0260200 LjG1.1_chr2 72813744 72815599 -
3 domain predictions
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LotjaGi2g1v0302000.1
n.a. Expansin; TAIR: AT1G69530.1 expansin A1; Swiss-Prot: sp|Q9C554|EXPA1_ARATH Expansin-A1; TrEMBL-Plants: tr|Q8L5G4|Q8L5G4_CICAR Alpha-expansin 4; Found in the gene: LotjaGi2g1v0302000 LjG1.1_chr2 77600734 77602851 +
3 domain predictions
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LotjaGi2g1v0302000.2
n.a. Expansin; TAIR: AT1G69530.4 expansin A1; Swiss-Prot: sp|Q9C554|EXPA1_ARATH Expansin-A1; TrEMBL-Plants: tr|Q8L5G4|Q8L5G4_CICAR Alpha-expansin 4; Found in the gene: LotjaGi2g1v0302000 LjG1.1_chr2 77601090 77602149 +
3 domain predictions
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LotjaGi2g1v0373800.1
n.a. Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|A0A0S3SD28|A0A0S3SD28_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0373800 LjG1.1_chr2 87070106 87073602 -
3 domain predictions
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LotjaGi2g1v0373800.3
n.a. Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|A0A0S3SD28|A0A0S3SD28_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0373800 LjG1.1_chr2 87070769 87072812 -
3 domain predictions
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LotjaGi2g1v0419100.1
n.a. Expansin-like protein; TAIR: AT4G17030.1 expansin-like B1; Swiss-Prot: sp|O23547|EXLB1_ARATH Expansin-like B1; TrEMBL-Plants: tr|G7JYL2|G7JYL2_MEDTR Expansin-B1-like protein; Found in the gene: LotjaGi2g1v0419100 LjG1.1_chr2 91740680 91751300 +
3 domain predictions
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LotjaGi2g1v0429600.1
n.a. Expansin-like protein; TAIR: AT1G12560.1 expansin A7; Swiss-Prot: sp|Q9LN94|EXPA7_ARATH Expansin-A7; TrEMBL-Plants: tr|G7KET8|G7KET8_MEDTR Expansin A10; Found in the gene: LotjaGi2g1v0429600 LjG1.1_chr2 92670078 92671992 +
3 domain predictions
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LotjaGi2g1v0429600.2
n.a. Expansin-like protein; TAIR: AT1G12560.1 expansin A7; Swiss-Prot: sp|Q8W2X8|EXP30_ORYSJ Putative expansin-A30; TrEMBL-Plants: tr|A0A0R4J4A3|A0A0R4J4A3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0429600 LjG1.1_chr2 92670191 92670804 +
3 domain predictions
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LotjaGi3g1v0049100.1
n.a. Expansin; TAIR: AT3G15370.1 expansin 12; Swiss-Prot: sp|Q9LDJ3|EXP12_ARATH Expansin-A12; TrEMBL-Plants: tr|A0A1J7I5Z0|A0A1J7I5Z0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0049100 LjG1.1_chr3 5150244 5153928 +
3 domain predictions
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LotjaGi3g1v0049100.2
n.a. Expansin; TAIR: AT3G15370.1 expansin 12; Swiss-Prot: sp|Q9LDJ3|EXP12_ARATH Expansin-A12; TrEMBL-Plants: tr|A0A1J7I5Z0|A0A1J7I5Z0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0049100 LjG1.1_chr3 5150747 5152641 +
3 domain predictions
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LotjaGi3g1v0165800.1
n.a. Ripening related protein family; TAIR: AT1G59910.1 Actin-binding FH2 (formin homology 2) family protein; Swiss-Prot: sp|P84527|KIWEL_ACTDE Kiwellin; TrEMBL-Plants: tr|G8A171|G8A171_MEDTR Ripening related protein family; Found in the gene: LotjaGi3g1v0165800 LjG1.1_chr3 22610122 22611183 +
3 domain predictions
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LotjaGi3g1v0225600.1
n.a. Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|V7AL52|V7AL52_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0225600 LjG1.1_chr3 34744367 34747936 -
3 domain predictions
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LotjaGi3g1v0225600.2
n.a. Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|A0A0S3SX45|A0A0S3SX45_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0225600 LjG1.1_chr3 34745051 34747529 -
2 domain predictions
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LotjaGi3g1v0381800.1
n.a. Ripening related protein family; TAIR: AT4G30380.1 Barwin-related endoglucanase; Swiss-Prot: sp|Q6H5X0|RIP2_ORYSJ Putative ripening-related protein 2; TrEMBL-Plants: tr|A0A072TZD6|A0A072TZD6_MEDTR Ripening related protein family; Found in the gene: LotjaGi3g1v0381800 LjG1.1_chr3 77505914 77506634 -
3 domain predictions
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