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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0505200 |
| Transcript ID | LotjaGi1g1v0505200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT5G15290.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DKC2|CASP1_LOTJA Casparian strip membrane protein 1; TrEMBL-Plants: tr|W9R0I2|W9R0I2_9ROSA CASP-like protein; Found in the gene: LotjaGi1g1v0505200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102316226..102317613) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGAAGTCAAGTCCTGCTGAGCTAATTAGTGAGGCAAAGAGTTCCACCCAAAATAGCAAGATGAAGAGGGCAGTGTC TGTGCTTGATTTCATTCTGAGGCTAATTGCAGTTGTTGCCACCTTAGCAAGTGCCATTGCAATGGGAACAACGGATGAGT CACTTCCCTTCTTCACTCAGTTCATTCGGTTCAGGGCTGAGTATGATGATCTTCCTACTTTGAGGTGTGCATTTATGGGC TTCTATTATGAATGTCATTGAATTCATGTGTGTTTGTTTAAATGTTGGATGAATGTAAAAGAGTGTTTGCCCAATCCAAC CTCTCACATCTATTGACTTCTTAGCATTATAATGTGTATGAATATGCTTTGGGAAGGAGGCCAACAGAAAAATAAACAAT CGAATCATAACCCAAACCTTGCATTATTTTAGGCTACGACCATATTTTTGCCTCCAAACATGATCAGGATCAGGGTAAAA AGAAAACTACTATGCTAACCCATTTGAATTTTGATTTGAAAACAGGCTTTTTGTAGTTGCCAGTGCATTTGCAAGCGGCT ATCTCATTCTTTCCCTACCATTATCCATCTTGCATATCACAAGGAGCAGCGCTCGAAGGACTAGAGTTATCTTGATTATC TTGGATATGGTAAGTCGTTAATACCAAATTTTGATATACTTCTATACATGTTTTTTTTTATAATAATCAAATTATAACAT GACAGTGAGTTGGAAAAGAAGTTGAGGAAGGTTATAACATCAAAAAAATAAAGTGAAAGTGACCAAGACTTTCACATGAC AACATGAGAGAATTTAAATATGAGGAAACATAATACAATTTTCACATGAGAGCATCCTAATCTTAACAAACTAAGTGTTA GTAGCATTTTTCTTCAGCTAATCGTCTTTTTCATCTTTCCGGGATGAAATTAATTGCATTTTTTATTTTTCAGGGATTAA ATTGAATTTTATCTTTTGGAGCTAAAATAACAATTTTCATTTAGAACTAGTAGATATTACTAAAGTGACTTACCAGTTAT CTTAAAATGTGCAAAATGAGTATTTACTCCTAAATCTAAATAAATAAGCAACATAAATGGGTAATTTATGTCTGTTTAAT ATACAAGTTGAGAAGCCAGCAAATTCTGAAATGTTTAACTATATATATGCAGGTAATGCTAACTTCATTGACAGCTGCAT CTTCTGCAGCAGCAGCTATTGTTTATTTGGCTCACAAGGGGAATGCCAAAGCAAATTGGTTTGCCTTTTGCCAACAGTAT GACTCTTTCTGTGAGCGCATATCTGGATCTTTGATTGGATCCTTCATTGCAATTCCACTGTTCATCATGCTGATCCTTTT CTCTGCTTTGGTTCTCTCAAAACGTTAA
CDS sequence (LotjaGi1g1v0505200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTCAAGTCCTGCTGAGCTAATTAGTGAGGCAAAGAGTTCCACCCAAAATAGCAAGATGAAGAGGGCAGTGTCTGT GCTTGATTTCATTCTGAGGCTAATTGCAGTTGTTGCCACCTTAGCAAGTGCCATTGCAATGGGAACAACGGATGAGTCAC TTCCCTTCTTCACTCAGTTCATTCGGTTCAGGGCTGAGTATGATGATCTTCCTACTTTGAGGCTTTTTGTAGTTGCCAGT GCATTTGCAAGCGGCTATCTCATTCTTTCCCTACCATTATCCATCTTGCATATCACAAGGAGCAGCGCTCGAAGGACTAG AGTTATCTTGATTATCTTGGATATGGTAATGCTAACTTCATTGACAGCTGCATCTTCTGCAGCAGCAGCTATTGTTTATT TGGCTCACAAGGGGAATGCCAAAGCAAATTGGTTTGCCTTTTGCCAACAGTATGACTCTTTCTGTGAGCGCATATCTGGA TCTTTGATTGGATCCTTCATTGCAATTCCACTGTTCATCATGCTGATCCTTTTCTCTGCTTTGGTTCTCTCAAAACGTTA A
Protein sequence (LotjaGi1g1v0505200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSSPAELISEAKSSTQNSKMKRAVSVLDFILRLIAVVATLASAIAMGTTDESLPFFTQFIRFRAEYDDLPTLRLFVVAS AFASGYLILSLPLSILHITRSSARRTRVILIILDMVMLTSLTAASSAAAAIVYLAHKGNAKANWFAFCQQYDSFCERISG SLIGSFIAIPLFIMLILFSALVLSKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 12 | 186 | 175 | 4.2E-77 | – | |
| PANTHER | 12 | 186 | 175 | 4.2E-77 | – | |
| Pfam | 23 | 169 | 147 | 3.2E-45 | ||
| Phobius | 30 | 48 | 19 | - | – | |
| TIGRFAM | 30 | 181 | 152 | 6.4E-46 | ||
| TMHMM | 30 | 49 | 20 | - | – | |
| Phobius | 49 | 72 | 24 | - | – | |
| Phobius | 73 | 96 | 24 | - | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 97 | 107 | 11 | - | – | |
| Phobius | 108 | 135 | 28 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 136 | 161 | 26 | - | – | |
| TMHMM | 161 | 183 | 23 | - | – | |
| Phobius | 162 | 183 | 22 | - | – | |
| Phobius | 184 | 186 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0505200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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