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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006459
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 55 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.479s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0054369.1
n.a. PREDICTED: CASP-like protein 9-like [Glycine max] gi|356556491|ref|XP_003546558.1| chr0 17397019 17398407 -
2 domain predictions
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Lj0g3v0070029.1
n.a. PREDICTED: casparian strip membrane protein 1-like [Cicer arietinum] gi|502178620|ref|XP_004516297.1| chr0 25467629 25468822 -
2 domain predictions
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Lj0g3v0087919.1
n.a. PREDICTED: CASP-like protein 9-like [Glycine max] gi|356556491|ref|XP_003546558.1| chr0 35849253 35850075 -
2 domain predictions
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Lj0g3v0217659.1
n.a. PREDICTED: casparian strip membrane protein 1-like [Cicer arietinum] gi|502178620|ref|XP_004516297.1| chr0 110782073 110783441 -
2 domain predictions
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Lj0g3v0342909.1
n.a. PREDICTED: CASP-like protein 12-like [Cicer arietinum] gi|502102623|ref|XP_004492135.1| chr0 179774021 179775820 +
2 domain predictions
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Lj0g3v0345919.1
n.a. PREDICTED: CASP-like protein 4-like [Cicer arietinum] gi|502111288|ref|XP_004494011.1| chr0 181422042 181424603 -
2 domain predictions
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Lj1g3v2979190.1
n.a. RecName: Full=Casparian strip membrane protein 5] gi|487523307|sp|P0DKC2.1|CASP5_LOTJA chr1 33834998 33836838 +
2 domain predictions
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Lj1g3v3765040.1
n.a. PREDICTED: casparian strip membrane protein 5-like [Glycine max] gi|356574032|ref|XP_003555157.1| chr1 43171238 43172371 -
2 domain predictions
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Lj1g3v3902560.1
n.a. PREDICTED: CASP-like protein RCOM_1446020-like [Cicer arietinum] gi|502106582|ref|XP_004492988.1| chr1 45090435 45091669 +
2 domain predictions
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Lj1g3v4765120.3
n.a. nitrate, fromate, iron dehydrogenase [Phaseolus vulgaris] gi|319428661|gb|ADV56684.1| chr1 57472583 57473970 +
2 domain predictions
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Lj2g3v1277650.1
n.a. PREDICTED: CASP-like protein 1-like [Fragaria vesca subsp]. vesca] gi|470137041|ref|XP_004304287.1| chr2 20398103 20399437 -
2 domain predictions
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Lj2g3v1277660.1
n.a. CASP-like protein 1 [Glycine max] gi|351727415|ref|NP_001236648.1| chr2 20398363 20399988 -
2 domain predictions
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Lj2g3v2496750.1
n.a. PREDICTED: CASP-like protein 10-like [Glycine max] gi|356569822|ref|XP_003553094.1| chr2 34804045 34808081 -
2 domain predictions
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Lj3g3v1203500.1
n.a. casparian strip membrane protein 5 [Glycine max] gi|351725825|ref|NP_001236338.1| chr3 15854071 15855419 +
2 domain predictions
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Lj3g3v2315400.1
n.a. PREDICTED: CASP-like protein POPTRDRAFT_553757-like [Glycine max] gi|356522984|ref|XP_003530122.1| chr3 28317850 28320957 -
2 domain predictions
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Lj3g3v2719910.1
n.a. RecName: Full=CASP-like protein 1] gi|391738050|sp|P0DI58.1|CSPL1_LOTJA chr3 33268636 33270033 -
2 domain predictions
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Lj4g3v0451200.1
n.a. CASP-like protein POPTRDRAFT_758901 [Theobroma cacao] gi|508780996|gb|EOY28252.1| chr4 6653810 6660758 +
2 domain predictions
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Lj4g3v1478260.1
n.a. PREDICTED: CASP-like protein 9-like [Glycine max] gi|356556491|ref|XP_003546558.1| chr4 22640508 22641485 +
2 domain predictions
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Lj4g3v2093590.1
n.a. CASP-like protein 3 [Glycine max] gi|351725485|ref|NP_001237350.1| chr4 28702383 28705103 +
2 domain predictions
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Lj4g3v2371650.1
n.a. CASP-like protein 6 [Glycine max] gi|358248678|ref|NP_001239666.1| chr4 32677020 32678761 -
2 domain predictions
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Lj4g3v2371680.1
n.a. PREDICTED: CASP-like protein 7-like [Cicer arietinum] gi|502151165|ref|XP_004508310.1| chr4 32689540 32693731 +
2 domain predictions
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Lj5g3v0806320.1
n.a. RecName: Full=Casparian strip membrane protein 1] gi|391738014|sp|P0DI55.1|CASP1_LOTJA chr5 11655881 11657061 -
2 domain predictions
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Lj6g3v0365870.1
n.a. PREDICTED: CASP-like protein 10-like [Glycine max] gi|356569822|ref|XP_003553094.1| chr6 3429447 3432787 -
2 domain predictions
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Lj6g3v1105050.1
n.a. PREDICTED: CASP-like protein 9-like [Glycine max] gi|356556491|ref|XP_003546558.1| chr6 13734445 13735952 +
2 domain predictions
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Lj6g3v1742810.1
n.a. PREDICTED: CASP-like protein GSVIVT00013502001-like [Glycine max] gi|356557971|ref|XP_003547283.1| chr6 19590478 19593109 -
2 domain predictions
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Lj6g3v1918310.1
n.a. PREDICTED: CASP-like protein 7-like [Glycine max] gi|356549065|ref|XP_003542918.1| chr6 21776640 21778576 -
2 domain predictions
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LotjaGi1g1v0101000.1
n.a. CASP-like protein; TAIR: AT1G17200.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6TCJ2|CSPLA_SOYBN CASP-like protein 2A2; TrEMBL-Plants: tr|I3T3R6|I3T3R6_LOTJA CASP-like protein; Found in the gene: LotjaGi1g1v0101000 LjG1.1_chr1 15333989 15339446 +
2 domain predictions
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LotjaGi1g1v0505200.1
n.a. CASP-like protein; TAIR: AT5G15290.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DKC2|CASP1_LOTJA Casparian strip membrane protein 1; TrEMBL-Plants: tr|W9R0I2|W9R0I2_9ROSA CASP-like protein; Found in the gene: LotjaGi1g1v0505200 LjG1.1_chr1 102310779 102319745 +
2 domain predictions
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LotjaGi1g1v0505200.2
n.a. CASP-like protein; TAIR: AT5G15290.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DKC2|CASP1_LOTJA Casparian strip membrane protein 1; TrEMBL-Plants: tr|W9R0I2|W9R0I2_9ROSA CASP-like protein; Found in the gene: LotjaGi1g1v0505200 LjG1.1_chr1 102316226 102317613 +
2 domain predictions
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LotjaGi1g1v0539200.1
n.a. CASP-like protein; TAIR: AT2G39518.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6T1Z6|CSPLC_SOYBN CASP-like protein 4D1; TrEMBL-Plants: tr|A0A151S7H7|A0A151S7H7_CAJCA CASP-like protein; Found in the gene: LotjaGi1g1v0539200 LjG1.1_chr1 106781380 106784888 +
2 domain predictions
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LotjaGi1g1v0539300.1
n.a. CASP-like protein; TAIR: AT2G39518.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6T1Z6|CSPLC_SOYBN CASP-like protein 4D1; TrEMBL-Plants: tr|I3SJZ7|I3SJZ7_LOTJA CASP-like protein; Found in the gene: LotjaGi1g1v0539300 LjG1.1_chr1 106788151 106789834 +
2 domain predictions
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LotjaGi1g1v0601200.1
n.a. CASP-like protein; TAIR: AT5G54980.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6T2J5|CSPL4_SOYBN CASP-like protein 2D1; TrEMBL-Plants: tr|I3SNP2|I3SNP2_LOTJA CASP-like protein; Found in the gene: LotjaGi1g1v0601200 LjG1.1_chr1 114606516 114609388 -
2 domain predictions
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LotjaGi1g1v0619100.1
n.a. CASP-like protein; TAIR: AT2G27370.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6T4E0|CASP5_SOYBN Casparian strip membrane protein 5; TrEMBL-Plants: tr|I1N7K9|I1N7K9_SOYBN CASP-like protein; Found in the gene: LotjaGi1g1v0619100 LjG1.1_chr1 116605437 116606646 -
2 domain predictions
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LotjaGi1g1v0630200.1
n.a. CASP-like protein; TAIR: AT4G25040.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9RH17|CSPLA_RICCO CASP-like protein 1F2; TrEMBL-Plants: tr|I3T548|I3T548_LOTJA CASP-like protein; Found in the gene: LotjaGi1g1v0630200 LjG1.1_chr1 118328801 118330546 +
2 domain predictions
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LotjaGi1g1v0630200.2
n.a. CASP-like protein; TAIR: AT4G25040.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9RH17|CSPLA_RICCO CASP-like protein 1F2; TrEMBL-Plants: tr|I3T548|I3T548_LOTJA CASP-like protein; Found in the gene: LotjaGi1g1v0630200 LjG1.1_chr1 118328864 118330388 +
2 domain predictions
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LotjaGi1g1v0745900.1
n.a. CASP-like protein; TAIR: AT4G15630.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|A7NW78|CSPL5_VITVI CASP-like protein 1E2; TrEMBL-Plants: tr|G7KQZ0|G7KQZ0_MEDTR CASP-like protein; Found in the gene: LotjaGi1g1v0745900 LjG1.1_chr1 131908718 131913407 +
2 domain predictions
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LotjaGi1g1v0745900.2
n.a. CASP-like protein; TAIR: AT4G15630.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|A7NW78|CSPL5_VITVI CASP-like protein 1E2; TrEMBL-Plants: tr|G7KQZ0|G7KQZ0_MEDTR CASP-like protein; Found in the gene: LotjaGi1g1v0745900 LjG1.1_chr1 131908810 131914217 +
2 domain predictions
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LotjaGi2g1v0301500.1
n.a. CASP-like protein; TAIR: AT5G15290.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6T1G0|CASP7_SOYBN CASP-like protein 7; TrEMBL-Plants: tr|I3SC10|I3SC10_LOTJA CASP-like protein; Found in the gene: LotjaGi2g1v0301500 LjG1.1_chr2 77557672 77560130 -
2 domain predictions
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LotjaGi3g1v0178400.1
n.a. CASP-like protein; TAIR: AT2G27370.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI56|CASP3_LOTJA Casparian strip membrane protein 3; TrEMBL-Plants: tr|A0A0B2RLZ5|A0A0B2RLZ5_GLYSO CASP-like protein; Found in the gene: LotjaGi3g1v0178400 LjG1.1_chr3 24774928 24776394 +
2 domain predictions
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LotjaGi3g1v0368900.1
n.a. CASP-like protein; TAIR: AT3G16300.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9GXD6|CSPLO_POPTR CASP-like protein 3A1; TrEMBL-Plants: tr|A0A151SHG8|A0A151SHG8_CAJCA CASP-like protein; Found in the gene: LotjaGi3g1v0368900 LjG1.1_chr3 75554234 75557410 -
2 domain predictions
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LotjaGi3g1v0429100.1
n.a. CASP-like protein; TAIR: AT5G15290.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI58|CSPL2_LOTJA CASP-like protein 2; TrEMBL-Plants: tr|A0A151UBC7|A0A151UBC7_CAJCA CASP-like protein; Found in the gene: LotjaGi3g1v0429100 LjG1.1_chr3 84035885 84037654 -
2 domain predictions
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LotjaGi3g1v0454600.1
n.a. CASP-like protein; TAIR: AT1G03700.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9RW00|CSPL6_RICCO CASP-like protein 1C1; TrEMBL-Plants: tr|A0A072TJ77|A0A072TJ77_MEDTR CASP-like protein; Found in the gene: LotjaGi3g1v0454600 LjG1.1_chr3 86788199 86790086 +
2 domain predictions
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LotjaGi4g1v0056000.1
n.a. CASP-like protein; TAIR: AT1G03700.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9H2V1|CSPL6_POPTR CASP-like protein 1C3; TrEMBL-Plants: tr|V7CR19|V7CR19_PHAVU CASP-like protein; Found in the gene: LotjaGi4g1v0056000 LjG1.1_chr4 6737478 6738819 +
2 domain predictions
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LotjaGi4g1v0299300.1
n.a. CASP-like protein; TAIR: AT4G25830.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6SZ04|CSPL3_SOYBN CASP-like protein 2C1; TrEMBL-Plants: tr|V7CBQ1|V7CBQ1_PHAVU CASP-like protein; Found in the gene: LotjaGi4g1v0299300 LjG1.1_chr4 67337214 67340298 +
2 domain predictions
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LotjaGi4g1v0299300.2
n.a. CASP-like protein; TAIR: AT4G25830.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6SZ04|CSPL3_SOYBN CASP-like protein 2C1; TrEMBL-Plants: tr|V7CBQ1|V7CBQ1_PHAVU CASP-like protein; Found in the gene: LotjaGi4g1v0299300 LjG1.1_chr4 67337313 67339703 +
2 domain predictions
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LotjaGi4g1v0346000.1
n.a. CASP-like protein; TAIR: AT4G15630.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6TBD0|CSPL6_SOYBN CASP-like protein 1E1; TrEMBL-Plants: tr|I3T6M8|I3T6M8_LOTJA CASP-like protein; Found in the gene: LotjaGi4g1v0346000 LjG1.1_chr4 72547374 72550706 -
2 domain predictions
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LotjaGi4g1v0346100.1
n.a. CASP-like protein; TAIR: AT3G06390.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6SVQ5|CSPL7_SOYBN CASP-like protein 1D2; TrEMBL-Plants: tr|I3SHN8|I3SHN8_LOTJA CASP-like protein; Found in the gene: LotjaGi4g1v0346100 LjG1.1_chr4 72560820 72566303 +
2 domain predictions
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LotjaGi4g1v0390100.1
n.a. CASP-like protein; TAIR: AT5G44550.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6TG62|CSPL9_SOYBN CASP-like protein 1B1; TrEMBL-Plants: tr|A0A151TKN9|A0A151TKN9_CAJCA CASP-like protein; Found in the gene: LotjaGi4g1v0390100 LjG1.1_chr4 76850691 76861472 -
2 domain predictions
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LotjaGi5g1v0099800.1
n.a. CASP-like protein; TAIR: AT2G36100.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI57|CASP5_LOTJA Casparian strip membrane protein 5; TrEMBL-Plants: tr|A0A151U3S8|A0A151U3S8_CAJCA CASP-like protein; Found in the gene: LotjaGi5g1v0099800 LjG1.1_chr5 17990518 17992126 +
2 domain predictions
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LotjaGi5g1v0100000.1
n.a. CASP-like protein; TAIR: AT2G36100.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI40|CASP1_VIGUN Casparian strip membrane protein 1; TrEMBL-Plants: tr|A0A151U3S8|A0A151U3S8_CAJCA CASP-like protein; Found in the gene: LotjaGi5g1v0100000 LjG1.1_chr5 18029914 18031205 -
2 domain predictions
 –