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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0517600 |
| Transcript ID | LotjaGi1g1v0517600.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G02300.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4; TrEMBL-Plants: tr|A0A0R0F4Z1|A0A0R0F4Z1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0517600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104107967..104111081) extracted from Lotus japonicus Gifu genome v1.2.
ATGCATATATTTCATATATTAGGGGCTAATGACTTTGGTCAATTGGGTGATGGAACGGAGGAGCGAAGGAAGCATCCTAA GAAAGTAAAAGAATTAGAGTCAGAGTTTGTAAAATCTGTATCCTGCGGAGCACATTGTTCTGCTTGCATTGCAGACCCTC GTGAAAATGATGGTACCGTCTCGACTGGAAGGCTCTGGGTGTGGGGCCAAAATCAGGTAATACTTTTTTAAGGGTTAATG CTTGTTATAATATTCTTCATTGTCAGAAATCCTTCATCTTCAACTTATTTTTTTATATTTCAGGGATCAAATCTTCCTAG ATTGTTTTGGGGGGCTTTCGAACCTAACACAGTAAGTATTTATGTCTGAGACTGAGTTTGAGTGCATACCAGTATATTTA TATGTATATATTTGCATGTATGTAAACATTCATAATGACTAAAGGAAATAATGCGTGATTTATTTGATTTATTTGATTAT TTTGTTATTTTCATTGTTTATATGGAAAAAGATCGAAATTCCACGTTCTATTTTTATTTTACTAGGTAGAGAGCTGTGAT AAAGAAGAAGTACACTTAAATAGGAATCTTTCCAAGCAATGCCTAATCACCTGCCTTTATTTTTACTCCTAGAGTCAACC CCACCATAAAATCTGACTACTGGTGTTGGATATACATAGAGATACTTTTGTTCTTACACATTTGTTACCCATTATTTTTT GCCATGCCTTACTATGATTTTAGGTTCTTCTAAACATTGTCTATTGTATAGTTTATACATTACTTTTGTACTCTGTAATA TGCTCAACATCACTTTTTTCCACCATATGTAAAATCTATTCGTTAGGTCTAATATGTTCTGAGGCCCATGAAGGATGATA ATTGCTTCTTTGGTGTCATGTAACTTCTTCCATGAATGTAATTCTTTCCTGTATTCTTGTTTCCCAAATTTTTGTTAGCC TTGCTAGGAATTATGATATATGAATACCTCTATTCTCCTAGGTTTGAGTTTAATTTTATTAAATGCTATGTAGAATGCAG TCTCTCTTCCTTACCTTTGGGGGATACAATATTTATATGTTGCAATTTTTATCTTGTTTACTTTTCTCCTATCATTCATA TTATCATACTTACAGATTATTCGTGAAGTGTCATGTGGAGCTGTCCATGTGGTTGCTTTATCTGAGGAAGGCCTACTACA AGCTTGGGGTAATTCAGTAATTGCCTTGCTTTGTTCGCTATTTTCTTTATAAATATATTATTTGTCATATTTGTTTTGTA AATTTTATGTAATAATTGCCTTTATGGAGTTGACATGGTTAGAGGCTTATAAATTCACTCAGCATTAAATGTAGAAAAGT AAATCAAGCATTCACAAAGTGGGTTTCTGCTTTCATATGACCTACTAATCAGGTTTTTCTCACTGTTTTCATAAACCAGG CTATAATGAGTATGGTCAACTTGGCCGAGGTGTTACTTGTGAAGGACTACAGAGGCCTCGTATTATAAATTCTTATGCTA AGTTCCTTGATGAAACCCCTGAGCTTGTGAAGATTACCACAGTGTCATGCGGGGAGTACCACACAGCAGCCATTTCTGAT AAGGGCGAGGTGTAAGTGATTTGAAGGACTTTCTTGATGGATATAAATTTAAACATGAAATTGTGGTTTTCCGCATGACA CATTAGGGAATCTCACATCAGGAGACAAGATGCAATGGAAATGCTGTTGAGCTTAGTAATTTATTTGTGTGTTTGCAGAA GATACTCAATCTTTGTTTAGTTTCTTTTGCTCATTTGATTTAATACATGAACACAATGGTGTATTTATCTAGCCTAAGGA ATAACTTGTTTTGCTTATATGTATTGTTTGGGATCCATAAACAATATTAAAAGTGATTACTTATGGAATTTAGCTTCTTG TGATAATATTTCGTCACTTTTAATATTTGTCCTTCTACCTTGCAGTTACACATGGGGGCTAGGAAATATGGGCCAGCTTG GGCATTCTTCACTTCAGTATGGGGATAAAGAGTTAATACCAAGGAGGGTGGTTTCCCTCGATAGTATTTACATAAAAGAC GTGGCGTGTGGTGGTGTACATACATGTGCTTTAACTCAGGGAGGAGCTCTTTATGCTTGGGGTGGCGGTCAATCTGGACA GTTAGGCCTTGGTCCCAACACCGGATTGTTCTCGTGTGTTGCTAATGACTCTCAGACGTTTTTCCGAAACATTCCGGTTT TAATTGTTCCGAAAGGCGTGCAACTCATTGCTTGCGGACATTCCCATACTCTTATTTCTATGAGTGATGGTCGAATTCAT GGATGGGGTTACAATAATTATGGTCAGGCAGCCAATGAGAAATCTACATATGCTTGGTATCCATCACCAGTTGACTGGTA TGTATTTCTAGCTTAAGTAACTTCTTCATTATAATAAAAATAGGGGCAAACTTGGTGCTATAAAGCTCTTGCTATATGCA TGAGATCCAGGAGGGGCCGGACCCACTTTGTGGATCTAGTGTAGGCAGTCTTACCTTGCATTTTTGCAAGAGGCTGATTC CACGGCTTGAACCTGTGATTGCATCGCACAACCTTACTGTTGCGCCAAGACTCGCCCTCAACATCTTCATGATAGCATAG TTTTTTATTTTAAACTTCCTCAATCACAGGTGTGTTGGGGAGGTTAGAAAACTAGCTGCTGGTGGGGGCCATTCAGCTGT GTTGACTGATGCTTGTTCATTAAAGGAGTTGTGTGAGTTTGTACTTGCTGAGAGTATGACTTTATCTAATGCTGCTAAAG TTGAGGATATTGCATACAGAACCGGCTCAGACGCCTTAGCTCGCCTTTGCGGAAGACTCAGGTACTTCATGTGATACATG TGATTCTAATATGCTCTTCAACTCAATTAGAGTATCATCAGTTTTAATTAGGATTTGAAAAGACTAATAGTTAACAATTG GTAATTCATTTTCAAAATGATAAACTGCATACTTTGTGATATCCGTTATCTGAAGTTCTTTTGGTAATAAATTTATACAC TCTCAAAGTCCTTCTTACCCATGTACTTCAAAGGGAAAACGTGGTGCTATAAAGCTCCCGCTATCCGGGAGGTCC
CDS sequence (LotjaGi1g1v0517600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATATATTTCATATATTAGGGGCTAATGACTTTGGTCAATTGGGTGATGGAACGGAGGAGCGAAGGAAGCATCCTAA GAAAGTAAAAGAATTAGAGTCAGAGTTTGTAAAATCTGTATCCTGCGGAGCACATTGTTCTGCTTGCATTGCAGACCCTC GTGAAAATGATGGTACCGTCTCGACTGGAAGGCTCTGGGTGTGGGGCCAAAATCAGGGATCAAATCTTCCTAGATTGTTT TGGGGGGCTTTCGAACCTAACACAATTATTCGTGAAGTGTCATGTGGAGCTGTCCATGTGGTTGCTTTATCTGAGGAAGG CCTACTACAAGCTTGGGGCTATAATGAGTATGGTCAACTTGGCCGAGGTGTTACTTGTGAAGGACTACAGAGGCCTCGTA TTATAAATTCTTATGCTAAGTTCCTTGATGAAACCCCTGAGCTTGTGAAGATTACCACAGTGTCATGCGGGGAGTACCAC ACAGCAGCCATTTCTGATAAGGGCGAGGTTTACACATGGGGGCTAGGAAATATGGGCCAGCTTGGGCATTCTTCACTTCA GTATGGGGATAAAGAGTTAATACCAAGGAGGGTGGTTTCCCTCGATAGTATTTACATAAAAGACGTGGCGTGTGGTGGTG TACATACATGTGCTTTAACTCAGGGAGGAGCTCTTTATGCTTGGGGTGGCGGTCAATCTGGACAGTTAGGCCTTGGTCCC AACACCGGATTGTTCTCGTGTGTTGCTAATGACTCTCAGACGTTTTTCCGAAACATTCCGGTTTTAATTGTTCCGAAAGG CGTGCAACTCATTGCTTGCGGACATTCCCATACTCTTATTTCTATGAGTGATGGTCGAATTCATGGATGGGGTTACAATA ATTATGGTCAGGCAGCCAATGAGAAATCTACATATGCTTGGTATCCATCACCAGTTGACTGGTGTGTTGGGGAGGTTAGA AAACTAGCTGCTGGTGGGGGCCATTCAGCTGTGTTGACTGATGCTTGTTCATTAAAGGAGTTGTGTGAGTTTGTACTTGC TGAGAGTATGACTTTATCTAATGCTGCTAAAGTTGAGGATATTGCATACAGAACCGGCTCAGACGCCTTAGCTCGCCTTT GCGGAAGACTCAGGTACTTCATGTGA
Protein sequence (LotjaGi1g1v0517600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHIFHILGANDFGQLGDGTEERRKHPKKVKELESEFVKSVSCGAHCSACIADPRENDGTVSTGRLWVWGQNQGSNLPRLF WGAFEPNTIIREVSCGAVHVVALSEEGLLQAWGYNEYGQLGRGVTCEGLQRPRIINSYAKFLDETPELVKITTVSCGEYH TAAISDKGEVYTWGLGNMGQLGHSSLQYGDKELIPRRVVSLDSIYIKDVACGGVHTCALTQGGALYAWGGGQSGQLGLGP NTGLFSCVANDSQTFFRNIPVLIVPKGVQLIACGHSHTLISMSDGRIHGWGYNNYGQAANEKSTYAWYPSPVDWCVGEVR KLAAGGGHSAVLTDACSLKELCEFVLAESMTLSNAAKVEDIAYRTGSDALARLCGRLRYFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 53 | 52 | 10.384 | ||
| PRINTS | 4 | 20 | 17 | 3.4E-11 | ||
| Gene3D | 5 | 77 | 73 | 1.2E-13 | ||
| PANTHER | 7 | 352 | 346 | 6.4E-211 | – | |
| PANTHER | 7 | 352 | 346 | 6.4E-211 | – | |
| SUPERFAMILY | 7 | 334 | 328 | 2.53E-69 | ||
| Pfam | 8 | 50 | 43 | 7.5E-10 | ||
| ProSiteProfiles | 63 | 106 | 44 | 8.856 | ||
| Gene3D | 78 | 362 | 285 | 2.4E-63 | ||
| PRINTS | 93 | 109 | 17 | 3.4E-11 | ||
| ProSiteProfiles | 107 | 167 | 61 | 14.001 | ||
| Pfam | 107 | 164 | 58 | 8.4E-10 | ||
| PRINTS | 109 | 123 | 15 | 3.4E-11 | ||
| ProSitePatterns | 154 | 164 | 11 | - | ||
| Pfam | 167 | 219 | 53 | 8.2E-13 | ||
| ProSiteProfiles | 168 | 222 | 55 | 17.157 | ||
| PRINTS | 212 | 230 | 19 | 3.4E-11 | ||
| ProSiteProfiles | 223 | 284 | 62 | 12.795 | ||
| Pfam | 223 | 279 | 57 | 7.6E-10 | ||
| PRINTS | 280 | 301 | 22 | 3.4E-11 | ||
| Pfam | 284 | 332 | 49 | 2.3E-5 | ||
| ProSiteProfiles | 285 | 335 | 51 | 11.67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0517600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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