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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PS00626
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 78 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.027s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0016979.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356567464|ref|XP_003551939.1| chr0 6552029 6556345 -
2 domain predictions
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Lj0g3v0274529.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Cucumis sativus] gi|449522972|ref|XP_004168499.1| chr0 142326271 142331215 +
2 domain predictions
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Lj0g3v0275799.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356567464|ref|XP_003551939.1| chr0 143052497 143054759 +
2 domain predictions
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Lj0g3v0311279.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357443735|ref|XP_003592145.1| chr0 162522956 162531762 -
2 domain predictions
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Lj0g3v0311279.2
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr0 162522956 162536081 -
2 domain predictions
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Lj0g3v0364399.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356539897|ref|XP_003538429.1| chr0 192286445 192288512 +
2 domain predictions
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Lj0g3v0364399.2
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502137766|ref|XP_004503178.1| chr0 192286445 192287657 +
2 domain predictions
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Lj1g3v1357910.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like isoform X1 [Cicer arietinum] gi|502137117|ref|XP_004502975.1| chr1 16212729 16219571 +
2 domain predictions
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Lj1g3v2068690.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356507929|ref|XP_003522715.1| chr1 24462770 24465804 +
2 domain predictions
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Lj1g3v3053800.1
n.a. PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like [Glycine max] gi|356568831|ref|XP_003552611.1| chr1 34855056 34860778 -
2 domain predictions
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Lj1g3v3598300.2
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502103175|ref|XP_004492220.1| chr1 41448108 41452451 -
2 domain predictions
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Lj2g3v0177210.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502180620|ref|XP_004516679.1| chr2 3224904 3236583 -
2 domain predictions
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Lj2g3v1349180.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356497843|ref|XP_003517766.1| chr2 21170182 21172890 +
2 domain predictions
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Lj2g3v1349180.2
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356497843|ref|XP_003517766.1| chr2 21170182 21172890 +
2 domain predictions
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Lj2g3v2646180.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356539897|ref|XP_003538429.1| chr2 35689214 35693783 +
2 domain predictions
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Lj2g3v2646180.2
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502137766|ref|XP_004503178.1| chr2 35689214 35693783 +
2 domain predictions
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Lj2g3v3055310.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357493985|ref|XP_003617281.1| chr2 39274464 39280024 +
2 domain predictions
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Lj3g3v1403990.1
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
2 domain predictions
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Lj3g3v1403990.2
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
2 domain predictions
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Lj3g3v1403990.3
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
2 domain predictions
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Lj4g3v2826730.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356512860|ref|XP_003525133.1| chr4 37863422 37870440 +
2 domain predictions
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Lj4g3v2826730.2
n.a. RCC1 and BTB domain-containing protein [Medicago truncatula] gi|357520093|ref|XP_003630335.1| chr4 37868748 37870440 +
2 domain predictions
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Lj5g3v1959100.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr5 27717103 27724815 -
2 domain predictions
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Lj6g3v0028840.1
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357439465|ref|XP_003590009.1| chr6 476798 483158 +
2 domain predictions
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Lj6g3v0391170.1
n.a. RCC1 and BTB domain-containing protein [Medicago truncatula] gi|357460713|ref|XP_003600638.1| chr6 3588296 3593342 +
2 domain predictions
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Lj6g3v0948300.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 1 [Theobroma cacao] gi|508785674|gb|EOY32930.1| chr6 10706009 10713387 -
2 domain predictions
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LotjaGi1g1v0049200.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1M739|I1M739_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6825463 6835374 -
2 domain predictions
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LotjaGi1g1v0049200.2
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833767 -
2 domain predictions
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LotjaGi1g1v0049200.3
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833780 -
2 domain predictions
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LotjaGi1g1v0049200.4
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|G7K368|G7K368_MEDTR Regulator of chromosome condensation (RCC1) family protein; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833926 -
2 domain predictions
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LotjaGi1g1v0049200.5
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833987 -
2 domain predictions
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LotjaGi1g1v0322900.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PPL8|A0A0B2PPL8_GLYSO Putative E3 ubiquitin-protein ligase HERC4; Found in the gene: LotjaGi1g1v0322900 LjG1.1_chr1 77448184 77455586 +
2 domain predictions
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LotjaGi1g1v0322900.2
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|I1KBN0|I1KBN0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0322900 LjG1.1_chr1 77448817 77454547 +
2 domain predictions
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LotjaGi1g1v0322900.3
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0S3RFR2|A0A0S3RFR2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0322900 LjG1.1_chr1 77448817 77454547 +
2 domain predictions
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LotjaGi1g1v0405900.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G11580.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PLF5|A0A0B2PLF5_GLYSO Putative E3 ubiquitin-protein ligase HERC4; Found in the gene: LotjaGi1g1v0405900 LjG1.1_chr1 89496990 89500154 -
2 domain predictions
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LotjaGi1g1v0426500.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT1G19880.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q8BK67|RCC2_MOUSE Protein RCC2; TrEMBL-Plants: tr|A0A0B2SM34|A0A0B2SM34_GLYSO Protein RCC2; Found in the gene: LotjaGi1g1v0426500 LjG1.1_chr1 92080216 92087163 +
2 domain predictions
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LotjaGi1g1v0452300.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT4G14368.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|G7KX16|G7KX16_MEDTR Regulator of chromosome condensation (RCC1) family protein; Found in the gene: LotjaGi1g1v0452300 LjG1.1_chr1 95218471 95226158 -
2 domain predictions
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LotjaGi1g1v0517600.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G02300.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|K7MV24|K7MV24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0517600 LjG1.1_chr1 104107293 104113251 -
2 domain predictions
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LotjaGi1g1v0517600.2
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G02300.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|K7MV24|K7MV24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0517600 LjG1.1_chr1 104107920 104112556 -
2 domain predictions
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LotjaGi1g1v0517600.3
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G02300.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|K7MV24|K7MV24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0517600 LjG1.1_chr1 104107932 104112556 -
2 domain predictions
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LotjaGi1g1v0517600.4
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G02300.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4; TrEMBL-Plants: tr|A0A0R0F4Z1|A0A0R0F4Z1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0517600 LjG1.1_chr1 104107967 104111081 -
2 domain predictions
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LotjaGi1g1v0517600.5
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G02300.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|K7MV24|K7MV24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0517600 LjG1.1_chr1 104107967 104112556 -
2 domain predictions
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LotjaGi1g1v0596600.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G60870.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1KYX5|I1KYX5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0596600 LjG1.1_chr1 113603365 113607376 -
2 domain predictions
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LotjaGi2g1v0053500.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G16040.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A1J7FQ68|A0A1J7FQ68_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0053500 LjG1.1_chr2 10595570 10607606 +
2 domain predictions
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LotjaGi2g1v0134600.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|A0A0S3TAW6|A0A0S3TAW6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48800529 48812331 -
2 domain predictions
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LotjaGi2g1v0134600.2
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1JDG4|I1JDG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48801389 48810020 -
2 domain predictions
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LotjaGi2g1v0134600.3
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1JDG4|I1JDG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48802245 48810028 -
2 domain predictions
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LotjaGi2g1v0134600.4
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|K7K743|K7K743_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48802439 48810020 -
2 domain predictions
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LotjaGi2g1v0309300.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT1G27060.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1J5K0|I1J5K0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0309300 LjG1.1_chr2 78386238 78388850 +
2 domain predictions
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LotjaGi2g1v0309300.2
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT1G27060.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|I1J5K0|I1J5K0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0309300 LjG1.1_chr2 78386279 78388799 +
2 domain predictions
 –