Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000408
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 94 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.798s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0016979.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356567464|ref|XP_003551939.1| chr0 6552029 6556345 -
5 domain predictions
 –
Lj0g3v0274529.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Cucumis sativus] gi|449522972|ref|XP_004168499.1| chr0 142326271 142331215 +
5 domain predictions
 –
Lj0g3v0275789.1
n.a. RCC1 domain-containing protein [Medicago truncatula] gi|357463177|ref|XP_003601870.1| chr0 143051417 143052502 +
3 domain predictions
 –
Lj0g3v0275799.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356567464|ref|XP_003551939.1| chr0 143052497 143054759 +
5 domain predictions
 –
Lj0g3v0311279.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357443735|ref|XP_003592145.1| chr0 162522956 162531762 -
5 domain predictions
 –
Lj0g3v0311279.2
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr0 162522956 162536081 -
5 domain predictions
 –
Lj0g3v0364399.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356539897|ref|XP_003538429.1| chr0 192286445 192288512 +
5 domain predictions
 –
Lj0g3v0364399.2
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502137766|ref|XP_004503178.1| chr0 192286445 192287657 +
2 domain predictions
 –
Lj0g3v0364439.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502137766|ref|XP_004503178.1| chr0 192316268 192317541 +
3 domain predictions
 –
Lj1g3v1357910.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like isoform X1 [Cicer arietinum] gi|502137117|ref|XP_004502975.1| chr1 16212729 16219571 +
5 domain predictions
 –
Lj1g3v1364450.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356508920|ref|XP_003523201.1| chr1 16484655 16491180 -
4 domain predictions
 –
Lj1g3v2068690.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356507929|ref|XP_003522715.1| chr1 24462770 24465804 +
4 domain predictions
 –
Lj1g3v2443940.1
n.a. Chromosome condensation regulator-like protein [Medicago truncatula] gi|357506539|ref|XP_003623558.1| chr1 28515625 28516676 -
3 domain predictions
 –
Lj1g3v3053800.1
n.a. PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like [Glycine max] gi|356568831|ref|XP_003552611.1| chr1 34855056 34860778 -
5 domain predictions
 –
Lj1g3v3598300.2
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502103175|ref|XP_004492220.1| chr1 41448108 41452451 -
5 domain predictions
 –
Lj1g3v3975580.1
n.a. Ankyrin repeat domain-containing protein [Medicago truncatula] gi|357508731|ref|XP_003624654.1| chr1 46892907 46902500 -
4 domain predictions
 –
Lj2g3v0177210.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502180620|ref|XP_004516679.1| chr2 3224904 3236583 -
5 domain predictions
 –
Lj2g3v1019870.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356497843|ref|XP_003517766.1| chr2 15812944 15815646 -
3 domain predictions
 –
Lj2g3v1349180.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356497843|ref|XP_003517766.1| chr2 21170182 21172890 +
5 domain predictions
 –
Lj2g3v1349180.2
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356497843|ref|XP_003517766.1| chr2 21170182 21172890 +
5 domain predictions
 –
Lj2g3v1734790.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502161164|ref|XP_004512057.1| chr2 26827072 26830564 +
4 domain predictions
 –
Lj2g3v2646170.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356539897|ref|XP_003538429.1| chr2 35686786 35688975 +
2 domain predictions
 –
Lj2g3v2646180.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356539897|ref|XP_003538429.1| chr2 35689214 35693783 +
5 domain predictions
 –
Lj2g3v2646180.2
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502137766|ref|XP_004503178.1| chr2 35689214 35693783 +
5 domain predictions
 –
Lj2g3v3055310.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357493985|ref|XP_003617281.1| chr2 39274464 39280024 +
5 domain predictions
 –
Lj3g3v1403990.1
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
5 domain predictions
 –
Lj3g3v1403990.2
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
5 domain predictions
 –
Lj3g3v1403990.3
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
5 domain predictions
 –
Lj4g3v2826730.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356512860|ref|XP_003525133.1| chr4 37863422 37870440 +
5 domain predictions
 –
Lj4g3v2826730.2
n.a. RCC1 and BTB domain-containing protein [Medicago truncatula] gi|357520093|ref|XP_003630335.1| chr4 37868748 37870440 +
5 domain predictions
 –
Lj5g3v1959100.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr5 27717103 27724815 -
5 domain predictions
 –
Lj6g3v0028840.1
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357439465|ref|XP_003590009.1| chr6 476798 483158 +
5 domain predictions
 –
Lj6g3v0391170.1
n.a. RCC1 and BTB domain-containing protein [Medicago truncatula] gi|357460713|ref|XP_003600638.1| chr6 3588296 3593342 +
5 domain predictions
 –
Lj6g3v0948300.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 1 [Theobroma cacao] gi|508785674|gb|EOY32930.1| chr6 10706009 10713387 -
5 domain predictions
 –
LotjaGi1g1v0049200.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1M739|I1M739_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6825463 6835374 -
5 domain predictions
 –
LotjaGi1g1v0049200.2
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833767 -
5 domain predictions
 –
LotjaGi1g1v0049200.3
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833780 -
5 domain predictions
 –
LotjaGi1g1v0049200.4
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|G7K368|G7K368_MEDTR Regulator of chromosome condensation (RCC1) family protein; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833926 -
5 domain predictions
 –
LotjaGi1g1v0049200.5
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833987 -
5 domain predictions
 –
LotjaGi1g1v0322900.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PPL8|A0A0B2PPL8_GLYSO Putative E3 ubiquitin-protein ligase HERC4; Found in the gene: LotjaGi1g1v0322900 LjG1.1_chr1 77448184 77455586 +
5 domain predictions
 –
LotjaGi1g1v0322900.2
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|I1KBN0|I1KBN0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0322900 LjG1.1_chr1 77448817 77454547 +
5 domain predictions
 –
LotjaGi1g1v0322900.3
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0S3RFR2|A0A0S3RFR2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0322900 LjG1.1_chr1 77448817 77454547 +
5 domain predictions
 –
LotjaGi1g1v0326500.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G08710.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0L9UER8|A0A0L9UER8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0326500 LjG1.1_chr1 77991085 77998499 -
4 domain predictions
 –
LotjaGi1g1v0326500.2
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G08710.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4; TrEMBL-Plants: tr|A0A151T4C7|A0A151T4C7_CAJCA Putative E3 ubiquitin-protein ligase HERC4; Found in the gene: LotjaGi1g1v0326500 LjG1.1_chr1 77991085 77998499 -
4 domain predictions
 –
LotjaGi1g1v0405900.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G11580.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PLF5|A0A0B2PLF5_GLYSO Putative E3 ubiquitin-protein ligase HERC4; Found in the gene: LotjaGi1g1v0405900 LjG1.1_chr1 89496990 89500154 -
5 domain predictions
 –
LotjaGi1g1v0426500.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT1G19880.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q8BK67|RCC2_MOUSE Protein RCC2; TrEMBL-Plants: tr|A0A0B2SM34|A0A0B2SM34_GLYSO Protein RCC2; Found in the gene: LotjaGi1g1v0426500 LjG1.1_chr1 92080216 92087163 +
5 domain predictions
 –
LotjaGi1g1v0452300.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT4G14368.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|G7KX16|G7KX16_MEDTR Regulator of chromosome condensation (RCC1) family protein; Found in the gene: LotjaGi1g1v0452300 LjG1.1_chr1 95218471 95226158 -
5 domain predictions
 –
LotjaGi1g1v0517600.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G02300.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|K7MV24|K7MV24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0517600 LjG1.1_chr1 104107293 104113251 -
5 domain predictions
 –
LotjaGi1g1v0517600.2
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G02300.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|K7MV24|K7MV24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0517600 LjG1.1_chr1 104107920 104112556 -
5 domain predictions
 –
LotjaGi1g1v0517600.3
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G02300.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|K7MV24|K7MV24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0517600 LjG1.1_chr1 104107932 104112556 -
5 domain predictions
 –