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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SSF50985
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 110 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.024s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0016979.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356567464|ref|XP_003551939.1| chr0 6552029 6556345 -
2 domain predictions
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Lj0g3v0180549.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502137188|ref|XP_004503000.1| chr0 87880778 87881529 +
2 domain predictions
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Lj0g3v0274529.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Cucumis sativus] gi|449522972|ref|XP_004168499.1| chr0 142326271 142331215 +
2 domain predictions
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Lj0g3v0275789.1
n.a. RCC1 domain-containing protein [Medicago truncatula] gi|357463177|ref|XP_003601870.1| chr0 143051417 143052502 +
2 domain predictions
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Lj0g3v0275799.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356567464|ref|XP_003551939.1| chr0 143052497 143054759 +
2 domain predictions
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Lj0g3v0311279.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357443735|ref|XP_003592145.1| chr0 162522956 162531762 -
2 domain predictions
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Lj0g3v0311279.2
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr0 162522956 162536081 -
2 domain predictions
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Lj0g3v0364399.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356539897|ref|XP_003538429.1| chr0 192286445 192288512 +
2 domain predictions
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Lj0g3v0364399.2
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502137766|ref|XP_004503178.1| chr0 192286445 192287657 +
2 domain predictions
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Lj0g3v0364439.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502137766|ref|XP_004503178.1| chr0 192316268 192317541 +
2 domain predictions
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Lj1g3v1079710.1
n.a. PREDICTED: Centromere protein F-like, partial [Saccoglossus kowalevskii] gi|291234167|ref|XP_002737030.1| chr1 13505890 13507175 +
2 domain predictions
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Lj1g3v1357910.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like isoform X1 [Cicer arietinum] gi|502137117|ref|XP_004502975.1| chr1 16212729 16219571 +
2 domain predictions
 –
Lj1g3v1364450.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356508920|ref|XP_003523201.1| chr1 16484655 16491180 -
2 domain predictions
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Lj1g3v2068690.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356507929|ref|XP_003522715.1| chr1 24462770 24465804 +
2 domain predictions
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Lj1g3v2443940.1
n.a. Chromosome condensation regulator-like protein [Medicago truncatula] gi|357506539|ref|XP_003623558.1| chr1 28515625 28516676 -
2 domain predictions
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Lj1g3v3053800.1
n.a. PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like [Glycine max] gi|356568831|ref|XP_003552611.1| chr1 34855056 34860778 -
2 domain predictions
 –
Lj1g3v3598300.2
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502103175|ref|XP_004492220.1| chr1 41448108 41452451 -
2 domain predictions
 –
Lj1g3v3975580.1
n.a. Ankyrin repeat domain-containing protein [Medicago truncatula] gi|357508731|ref|XP_003624654.1| chr1 46892907 46902500 -
2 domain predictions
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Lj2g3v0177210.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502180620|ref|XP_004516679.1| chr2 3224904 3236583 -
2 domain predictions
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Lj2g3v1019870.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356497843|ref|XP_003517766.1| chr2 15812944 15815646 -
2 domain predictions
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Lj2g3v1349180.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356497843|ref|XP_003517766.1| chr2 21170182 21172890 +
2 domain predictions
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Lj2g3v1349180.2
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] gi|356497843|ref|XP_003517766.1| chr2 21170182 21172890 +
2 domain predictions
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Lj2g3v1734790.1
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502161164|ref|XP_004512057.1| chr2 26827072 26830564 +
2 domain predictions
 –
Lj2g3v2646170.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356539897|ref|XP_003538429.1| chr2 35686786 35688975 +
2 domain predictions
 –
Lj2g3v2646180.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356539897|ref|XP_003538429.1| chr2 35689214 35693783 +
2 domain predictions
 –
Lj2g3v2646180.2
n.a. PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi|502137766|ref|XP_004503178.1| chr2 35689214 35693783 +
2 domain predictions
 –
Lj2g3v2748710.1
n.a. Receptor kinase-like protein [Medicago truncatula] gi|357492697|ref|XP_003616637.1| chr2 36386488 36389156 -
2 domain predictions
 –
Lj2g3v3055310.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357493985|ref|XP_003617281.1| chr2 39274464 39280024 +
2 domain predictions
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Lj3g3v0381650.1
n.a. Serine/threonine protein kinase-like protein ACR4 [Medicago truncatula] gi|357454477|ref|XP_003597519.1| chr3 3047882 3051899 -
2 domain predictions
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Lj3g3v1403990.1
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
2 domain predictions
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Lj3g3v1403990.2
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
2 domain predictions
 –
Lj3g3v1403990.3
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357470133|ref|XP_003605351.1| chr3 17960592 17966917 -
2 domain predictions
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Lj3g3v3752270.1
n.a. PREDICTED: serine/threonine-protein kinase-like protein CCR4-like [Cicer arietinum] gi|502146255|ref|XP_004506371.1| chr3 45423931 45427443 -
2 domain predictions
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Lj4g3v2704740.1
n.a. Serine/threonine protein kinase-like protein CCR4 [Medicago truncatula] gi|357461261|ref|XP_003600912.1| chr4 36446475 36449360 +
2 domain predictions
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Lj4g3v2826730.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356512860|ref|XP_003525133.1| chr4 37863422 37870440 +
2 domain predictions
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Lj4g3v2826730.2
n.a. RCC1 and BTB domain-containing protein [Medicago truncatula] gi|357520093|ref|XP_003630335.1| chr4 37868748 37870440 +
2 domain predictions
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Lj5g3v0627080.1
n.a. PREDICTED: serine/threonine-protein kinase-like protein CCR1-like [Glycine max] gi|356536932|ref|XP_003536986.1| chr5 8589026 8592113 -
2 domain predictions
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Lj5g3v1959100.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr5 27717103 27724815 -
2 domain predictions
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Lj6g3v0028840.1
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357439465|ref|XP_003590009.1| chr6 476798 483158 +
2 domain predictions
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Lj6g3v0391170.1
n.a. RCC1 and BTB domain-containing protein [Medicago truncatula] gi|357460713|ref|XP_003600638.1| chr6 3588296 3593342 +
2 domain predictions
 –
Lj6g3v0521540.1
n.a. Serine/threonine protein kinase-like protein CCR4 [Medicago truncatula] gi|357461261|ref|XP_003600912.1| chr6 5058414 5062298 +
2 domain predictions
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Lj6g3v0948300.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 1 [Theobroma cacao] gi|508785674|gb|EOY32930.1| chr6 10706009 10713387 -
2 domain predictions
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LotjaGi1g1v0049200.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1M739|I1M739_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6825463 6835374 -
2 domain predictions
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LotjaGi1g1v0049200.2
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833767 -
2 domain predictions
 –
LotjaGi1g1v0049200.3
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833780 -
2 domain predictions
 –
LotjaGi1g1v0049200.4
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|G7K368|G7K368_MEDTR Regulator of chromosome condensation (RCC1) family protein; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833926 -
2 domain predictions
 –
LotjaGi1g1v0049200.5
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833987 -
2 domain predictions
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LotjaGi1g1v0077500.1
n.a. Kinase family protein; TAIR: AT3G55950.1 CRINKLY4 related 3; Swiss-Prot: sp|Q9LY50|ACCR3_ARATH Putative serine/threonine-protein kinase-like protein CCR3; TrEMBL-Plants: tr|I1M7T5|I1M7T5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0077500 LjG1.1_chr1 11204280 11206676 +
2 domain predictions
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LotjaGi1g1v0296700_LC.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G15430.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6; TrEMBL-Plants: tr|A0A0L9UM44|A0A0L9UM44_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0296700_LC LjG1.1_chr1 71840443 71850372 +
2 domain predictions
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LotjaGi1g1v0296700_LC.2
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G15430.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|A0A0R0H8V2|A0A0R0H8V2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0296700_LC LjG1.1_chr1 71840443 71850504 +
2 domain predictions
 –