Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0520100 |
Transcript ID | LotjaGi1g1v0520100.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein family; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A0B2SQZ5|A0A0B2SQZ5_GLYSO F-box/kelch-repeat protein; Found in the gene: LotjaGi1g1v0520100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104405275..104408762) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAGTTAAGGGTAGTTAGCATTCAGTTAGGGGCAGTTAGCAATTGGTTGAGTTAGTTAGACTCTAAGGTTGAGTTATT CACTGTATAAATACTGTAATTATCAATTGAGCTTCATTAATTCACATTTTATCAAGAAAAATAAGTCTTCAAATGAAGGT TCTCTGTACAGTGGCGGCGTAACCGCCACCTCAACCGCCGCAACCACCACCTCAACTGGAGCAACCGCCACCTCTTCTTC CTCATTTTCGAGGTGTCTTTCTTCTGCCACCACGCCATTGCCACCCGTAGGCGCAACCGCCGCAATCACCACCTCAACCG GCGCAACCGCCACCTCTTCTCCTCCAATATCTTCTTCCTCATTTCAGCAGCAAAATCTTCTTCCGCCGCAACGCCATTGC CACTCCCATACTTCACCAACCTTCCATTCAAGTCGTAACCGCTCACGGAGCCATTGTCGCTACCTCGTTTGCTCGCAGAA CACCCTCTCTTTGCTACTGAAACATTGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCATGATGGACCCGTGCT TCAATGCTCTCCCTATCGATTTGATTCCACTGATTCTGGTGAGGTTACCTGTTCGATCTCTCCTCCGTTTCAAATGCGTC TGCAAATCGTGGCGGTCTCTGATTTCCGATCCCGAATTTGGTAAATCACATTTTGACCTAGCTGGTGCACCCACTCACCG TCTTCTTCTCAAAAGAATCAATGATGGTTCTGAAATTCAATCATTGGATTTACAAGCATCGCTTCACGACGATTCTGCTG TGGTAAACCTCAAATTCCCACCCTACACTGCCCCCTTTTTTCAATCCCTGGGTTCTTGCAGAGGGTTTGTTCTGTTAACC AAGAGGTTGTGTCCAACAAATGATCTCATCCTGTGGAATCCATCAACTGATGCTCACAGAGAAATTCCAGCGATCTTTCT TGGTGGTTTGTTTAATTCACTCTATGGTTTTGGGTATGACCAATCGAAGGATGATTATGTGCTTGTTCTAATCCGATTGG GTGTTCGATTGCTCGAAGAACGGTGTCAAATTGATGTTTTATCTCTGAAAACCAATGTACCCTCCTTTTATTACTATCGT GTTGTTCAATATCTGGAAGCTGGACATGAGTCCCAATGTGGGGTTTTCTTGGATGAGTCTCTACATTGGCTGGTTAAATC CAAGGCTACACAGCATCATCTAGTCCTTGCCTTTGATTTGGTGAAAAGAAGCTTTTCGAAGATTCCTTTTTCACCTGATT TGGCAGCGGAATTGGCAACTCATGGCCGAGGTTGTTTGAGGGTATTGGGAGGGTGTCTTAGTGTGTGTTACTCGAGTGGA GGTGGTGGCCATGAAGTGGCTGAGATATGGGTCATGAAAGATTCTTGGAGTAAATTGTTTGTTTTGACAATTCATGACCT TGTTGGCAGCAAGTTTTTTCCATTGTTTTCCACTGAAGGTGGTGGTGTTTTCGGATCTGATGAGAGTGGAACATTCAGGA AATTTAATGCTGAGGGTGAACTGACTGAACTGACTGAGAATTACACAGATGGACTGGATGACGACAAAGGTGCACTACAA TTTCTCAACATGTATAGAGAAAGCCTACTAACCCTCCCTGGTGACGTTGAGGAAGAAAATGTAGATGCCTGACAAGTAAG CATTTGTCTCCAACCCTTGTTACCTTTTTGTTTTAATTCATCTTTCATTATGTAATAGAGACTAACTATATCACTAGTAT TCCCCCCTTGAACTGAGAGAAGTGATGGTTTCGAAACTGCTGAGTTTATATTTTAGTTCTAAGTATCTTTGTTTAGATGG AGCTTAGTGAGAATTTCATCAACTTGCTCATGAGTTTGAACATGAGAAACAGCAAGAGTCATATCTCTCAACTTGTTTCT TTTGTAGTCTATGTAATAATCAAACTTTATACAATTAGACTATCACAAGTTTCACGATCTTATGCAACTTTGTAGGTCAA ATTAGTCTGCCATGCATTGCATCAATCAAGCAGAGTAGCAGGCAACTAAATGGACTCATCACCTGTTTGTATAAAGTATC ATAGCAGTTACTAGCAGTGCTTTGATTACCAACACAAACTAACATTGTCCTGCATTAGCTCAACATTTTATAAAACAAGG TCCAAAATAAACATAAACACTCAGAAAATGCACGCATGACACTATTCTAAATAACTTTACCCATGGAATTAATATGCCTT ATATTATGTGCCCACCCTTGACCCTACTACTACTAGTAGTCATTATTTACACAGTTATTACTAATACATTTGATTTCTTT ATATGGAGAATTTATTTTAGAGAAAAAGTGAGACATTATAGTCCATTGCCCGTTTGATGTGGCATGTGGGCTCAGAAGTC CTTGGGCTCACCTCTTTATCACTATCTAACTTTAAAGTGAGTTCTCCATAAATACTCTGTCACAGCAATTTGCTTGAGAA AATTTCAAGTACTCTTTTTCTTTCTTGGCCAAACTGGAAGGATTCTGTTAATAAATAATTATTCATGTTTCTTGCAAGCA ATAAAATATGTTAGAATATTTTATACACTCTCCTTGATGTTCTAGTTTTTCTTCAAAAGATGATACTGCTAGTGTTATTG AATGTCCTATATGGAAATCTATCACTTCTCTCTCTTCTATTCTCATCCCTCTCTAAGTATGGAAAGATGGAGGTGGAAAT GGGTGTGAAGAAAACATTTTCCTGATTTCTATAAGATTGGAGTTTGAAAGGAATTTTAAAATTAACAATGCTTGGAAGTA GGATTTGTCAAATTTTAGTTGGAGTTAGTCCATGCTACATTGCTACTTAGTATCATCTTGTTCTTTCTTCTCGGTATTGT TATTGCCCTTGTTCCTGTTACCTCTTTTACATGGTTTTCAGTTAACTACTTAGGGTGTCTTCTTTGCAAAAACAATTCCT GATTTTTATAAGCTAATGTGCTGTTAGATGTTTTGACTTTAAGTTGTGCAGATGTTGTTGATCTTAGCCATTTTGGAGGC TTGGAGCTTAAAGATGGTATGGAGTGAGAGGGAATCAAGTTGTAGTATGCATTGAGCTTGCTTGTAATTGGTTTAACCAC TTCATCTCAATGATCTAGTGCTGATAAGATTTTCTGTTATAGTTTCATGATATCCCTAAAGATACTTTGTAGTTTGTAAT AAGTAGGACCTATTGAATGAGTAATTACATTAGTGCTGTCAGAATAATGGACCCTTTGCTTGAAATGGCTATTGAGATTC ATGGAATTATATGTTGAAGCTCTTCAACAGTGGATAAGTCTGCTGTTAATTTCTCAGTTGAGCCTTTTAATTTGCAGGAG AGATTTCTACGTGGGTTAAATATGTTTTTAATTTGCAGGAGAGATTTCTACGTGGGTTAAATATGTTTTTAATTTGCCTG AGATTCCCGTTCTGGCAACCCCTGTGACAATTCAGTATAGTTTATTGT
CDS sequence (LotjaGi1g1v0520100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGACCCGTGCTTCAATGCTCTCCCTATCGATTTGATTCCACTGATTCTGGTGAGGTTACCTGTTCGATCTCTCCT CCGTTTCAAATGCGTCTGCAAATCGTGGCGGTCTCTGATTTCCGATCCCGAATTTGGTAAATCACATTTTGACCTAGCTG GTGCACCCACTCACCGTCTTCTTCTCAAAAGAATCAATGATGGTTCTGAAATTCAATCATTGGATTTACAAGCATCGCTT CACGACGATTCTGCTGTGGTAAACCTCAAATTCCCACCCTACACTGCCCCCTTTTTTCAATCCCTGGGTTCTTGCAGAGG GTTTGTTCTGTTAACCAAGAGGTTGTGTCCAACAAATGATCTCATCCTGTGGAATCCATCAACTGATGCTCACAGAGAAA TTCCAGCGATCTTTCTTGGTGGTTTGTTTAATTCACTCTATGGTTTTGGGTATGACCAATCGAAGGATGATTATGTGCTT GTTCTAATCCGATTGGGTGTTCGATTGCTCGAAGAACGGTGTCAAATTGATGTTTTATCTCTGAAAACCAATGTACCCTC CTTTTATTACTATCGTGTTGTTCAATATCTGGAAGCTGGACATGAGTCCCAATGTGGGGTTTTCTTGGATGAGTCTCTAC ATTGGCTGGTTAAATCCAAGGCTACACAGCATCATCTAGTCCTTGCCTTTGATTTGGTGAAAAGAAGCTTTTCGAAGATT CCTTTTTCACCTGATTTGGCAGCGGAATTGGCAACTCATGGCCGAGGTTGTTTGAGGGTATTGGGAGGGTGTCTTAGTGT GTGTTACTCGAGTGGAGGTGGTGGCCATGAAGTGGCTGAGATATGGGTCATGAAAGATTCTTGGAGTAAATTGTTTGTTT TGACAATTCATGACCTTGTTGGCAGCAAGTTTTTTCCATTGTTTTCCACTGAAGGTGGTGGTGTTTTCGGATCTGATGAG AGTGGAACATTCAGGAAATTTAATGCTGAGGGTGAACTGACTGAACTGACTGAGAATTACACAGATGGACTGGATGACGA CAAAGGTGCACTACAATTTCTCAACATGTATAGAGAAAGCCTACTAACCCTCCCTGGTGACGTTGAGGAAGAAAATGTAG ATGCCTGA
Protein sequence (LotjaGi1g1v0520100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMDPCFNALPIDLIPLILVRLPVRSLLRFKCVCKSWRSLISDPEFGKSHFDLAGAPTHRLLLKRINDGSEIQSLDLQASL HDDSAVVNLKFPPYTAPFFQSLGSCRGFVLLTKRLCPTNDLILWNPSTDAHREIPAIFLGGLFNSLYGFGYDQSKDDYVL VLIRLGVRLLEERCQIDVLSLKTNVPSFYYYRVVQYLEAGHESQCGVFLDESLHWLVKSKATQHHLVLAFDLVKRSFSKI PFSPDLAAELATHGRGCLRVLGGCLSVCYSSGGGGHEVAEIWVMKDSWSKLFVLTIHDLVGSKFFPLFSTEGGGVFGSDE SGTFRKFNAEGELTELTENYTDGLDDDKGALQFLNMYRESLLTLPGDVEEENVDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 2 | 80 | 79 | 5.0E-9 | – | |
ProSiteProfiles | 3 | 49 | 47 | 9.63 | ||
Pfam | 5 | 46 | 42 | 5.8E-9 | ||
SUPERFAMILY | 5 | 63 | 59 | 2.62E-15 | ||
PANTHER | 9 | 344 | 336 | 4.4E-75 | – | |
PANTHER | 9 | 344 | 336 | 4.4E-75 | – | |
SMART | 9 | 49 | 41 | 7.4E-10 | ||
TIGRFAM | 104 | 312 | 209 | 9.7E-21 | ||
Pfam | 206 | 304 | 99 | 9.5E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0520100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…