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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0533700 |
| Transcript ID | LotjaGi1g1v0533700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|A0A059BWT3|A0A059BWT3_EUCGR Uncharacterized protein; Found in the gene: LotjaGi1g1v0533700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106207466..106211806) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCATTCTCATTTGACCAGAAAAAAAAAGTCTGAATCTCTTCCATTCATGTTTCGCTTCGCTCTCACCATTTCCTGGT GAGCAAAACTTCCTCTCTACTCATCGTTTCTTTGTATTCAATTTCACGAACAATTATTGACAATTTCTTCATCATAATCA TTTTCAATTTGCATTTGAATCGTCCTTTTTGTTGATTGTGATTCTCAATGTAACTGATAAGTAATTTGGAGTAACTAAAA TCCAACCCCACTTAGTTTATGTGCCAATTTTGTAAACTTTTATACAGTGTTCTAAAGGGGTTTTGTTTCATGTGAACATT TATCAACATGCAGGAAGAAAATTTCACAATCTGTTTTTTTTGTGTGTTGTGTGTTTCTGTTATGCCATTGTGAGAATTCT GTTTCACTGTTTTGTATGGATGTAATTCCACCAAATCAACATGCTTTGGAAGTTTAATGTTGCCCTTGCATTTCTCTTAT AAGAGAATGATTCATGTATTGGCCTAAAATTAGGGAACCAAGCTATAGGCTCCACAATTGGTTGGTTTGTCTATTAATGG TGGAAATATATTTAACTAGGGTTAGTTGTCTTGAAGAATTGGTGTTGCCAGCACCCAATTTGATCGCCTTTTCTTTTCAT TTTTATTTGTTATTTTTGGAAGAATAAGAGAAAAACTTGTTATTGAATGAGAAAATCTCTTAGCCCGATTTAATTTATTT CGTGGCTTGGAAGTCCTTGGACTAAGATATTGAGTACATATTTCATTAGTTTGGTAGAAATGTGCTTGAAATCAAGACTT AGATTATGATTGTTGATTTCTTAATTTCAGTGAGAGGATGTTGGTCCTTTATTCGAAGGAGGATTCACATACAGATGTGA GAGGAATTTGATAGGAGACAGCATCATGAAAAAGAAAAAAAAGAAAAGAAAAGAGAGATTTTAGCAAGTGATTGATGGAG TTCTAAGAACAGGCAGCTTTGAAGGAGAGAAGAGTTTGTTACTTGTGTTGGCACTACAGAGAGGTAAGACTCCTCCTTTC TTTCTTTTTCTATTGCCATTTTAATCCTCTATAAGGACGAATATGGTGATGGTATAGATCTTTGAGGTGTTAATTTGGTG ACAAAAATGTTTGGACTTAAAAAAATGTTGTCATATCATTGAAAAAATGATTTTGATGACAGCTACTTGAGAAATCAGAT GAATTGTTCAGTACACCTTTTAGAGATGTTTTGGTATATGAAGTGTAAGAAACTTCTCTTACACTAAATTTTGCAGTTAA AGTTGAATTCCGTGATGGTTGATATAACTTACATGACACACATTTAAGCAGAAGAAGAATATCTTGATTCTTACGTTCAA GGTGAAAGAAATTTCCTGTGATATAAGGCACTACTTATTATATATTTCATTAGTAATTATGTGTCAAGATACTTATCATA CACTTAACTATAATTTTCATTAAATTGTTGAATTTAGTAGTTAATATTGAAGACAGAAATGGGTCATGTATCTAATATGA CTTGCACAATTGATGAGATGTAAAGAAGTTTAACTTACCCTAGTTGTTCCTATGCATCTCTCAAGAGGTGAAACACCTTG AATAATGAAACAAATGGTTGAATGTCAGCATAAAAAATATTTGACACAAAATTAAAATCAAACTTTAAATTAATGAGTGA AATAGCATACCATAAATTGAAAGTGCAACTCCTCATTAACTAAAGCGAACAAATAATTTGGGGTGTGACTGCTAGCCACG TAACCGGTGCGTGGCAAGAAGTCACGGCTAGATTGCACCAAGTATCAACATATACAACGTGTTTTGACACGCATACAGAT ACATGCCCCTTTCCCTCCGCTATCAATGGCAAGGAGTCACAGCTGGAGCGCACCAAGTTTCAGCAAACACTGCATGTTTT GACACGCATATAGATACACTCCTTCCTTTCTCCTTTAAATTGTGTTTGCAAACACTCTAACAGTAGAGGAGAAGTTGACT GAGAAGTCTGTGAATTATTCCCTGTATTTCTTTTGCTCCTTCTTCTTTTTCTTTCTTATTAGTTTACTAATCCATTTGAG GTTTTGCTTATCTGATTTCATGAATTTTATGTATACTTCCTCTGATGCTTACGGAATTCATTCAACTAACTTTCTATTCA ATCACCATTGAGTTATTGCTTCAGCTTAATCATATAAATACTTACTATGGTGACATTATGCATCTACAGGATTGCTGTAA TATGACGGCATTGATACGGATCAACAAGGAATTAAGGGACATGGTCATGGATCCTCCTTTATTGTGTAACGGCGGTACCT TCTCTCTCTTTTTTCACTATTATTCAAGAGCAATAAAGCACAACAGTTTTCTCTTTTAATTTTTTTCTTGTTTAAGAAGA TTGCTTGATGTGTGATGCTTTTGATACTTTTAGTTTGTTTAAAAACGGGTGAAACTATGAACAATTATAATTTATGAATT GAGTTTTCAATGTTCAGGCCCAGTCAGTGATGACTTGTTCCATTGGCAAGCTACCATTGTGGGCCCTAAAGGTAGCCCAT ATGCCCGTGGTGTGTTTCTTTTGTCAATTGAATTCACTAAAGATTATCCCTTCATACCACCCAAGGTAAATCCCAAAGCC TACCCCTTTGTCCACATTTTGATTATGTTTGCATTTAAGTGCTCTTGATTTCTTTCAATCTGAATTAGGCACTTGGAATG TAAGAGATGTACTAAAATATGGTAGATCCAAGGTTTATGTTTGGTAAAAGTATATTGAAATTGATCAAGAATTCCATAAG TGCTTACCCAATACCGTCTTGATTGTCATTACTTGAATTAATTATGGTGAAATTTTGATATTTTGCAGCTGATTTGCTGT GATCCTCATTACATGAATTGATTACTATCAAGTGTGAACTTTTTATTTAGTAGCCAATTAATTGATCTCATCGTTGGTTA GTTTTTTCTTTTTGGTGAGTTTATGGTACTTTGGGGGTCATTGTAATTGTTAAACCTATGAATTCAACCCATTTATCGAT CCGCTAGCTGGTTATCTTCTTAGGTATAAGAGAATAAAATTAGAGTTTTCAAGGATCGCAGAGTTAATTGTTTCCTAATT TTGATTGGATTTAGGCACACACAACAAGTGCTTTCAAATACCTAAGTTTTGCAAATAGTTTGTTTGAATTCATTGATTCT ATATGCAGGTTTCATTCCGCACAAAGATTTTCCATCCTAACATCCATACCAATGGTACTATTTGCCTTGACCTTCTCAAA GACGATTGGAGCCCTGCCCTTACAATATCCAAGGTAATGTGATAATTTTTGTTTTTGATAAATTTTCTTTTATTGCTAAA CTCAACTTGCCAATGTCATTTCCATCATGGTTGATCATGCCATCCTTTTCTATCCTTTTTGGGATTCATAATGGGGGAGG CTTTTGTTTTTGCTTTTGACCCGAACTGCAAAAAAAGATCTCTGGAAATAATTATCTGTGACAAATATGCTTGGCCTAAT ATACTTAGCTCTATTGATATTTTGCGTGAGACGCTAAAATTATGAAATTTTGTAGGTTCTCATTTGTATTGCCTCTCTGC TGACAAGTCCCAACACAGAGGATGCAGTGATGCCTGAGGTTGCTGAGATGTACAAGAATGACAGAGAAATGTACGTGGCT ACTGCTATGGCATGGACCCAGAAGTATGCCTTGCGTGGCGAGACTCCAAAGTTTTAAGTAACTTTGAAGATTAAAGGGGA TGTATTATGGAGTTGTGTTATCCATGTAGTGGACTCTACCTGTCTAGTGTGAAATGGTTTGGTTGTTGTTAAGTTTATGT TGTCGTCGTTGTTGTTAAGTTTATGTTGTTATCGTTGTTGTTGTTGTTGTTGTTAAGTTTATGTTTTATGGACCTAAAAT AAGTGTGTTCGAACTGATGTTTTGTGTAAAAGCCCTGTAAGCAAGTTGTGTTTAAAGTTATAATTAATTTGATGAATATT TTATCTTTTGTTGCAAAGAAAGTAAGATCTGCTGACGGTAAAGGGGAAGTTATCCTAAAATAAAAACAATTGAATACAAA CATAAAATTAAGCAGGTCATAAATTATTCATTTTACTATATCAAGTATATTTTCGTACTTTTCTATATCATAACTTTTTC TTTCCTCCAATACATTTTCATGAAATGGCACTAAATAAAAGAATTTATGTGCAATTGGAGATCGCACTGACAATAAAAAA ATTTCACACAAGCACTAAACTAAACTAAATAATTGATATACTGCCTCATCAATCACATTGGAGTCTGCTATTTTAAGTTG CAATCTTATAGCATGATTGAT
CDS sequence (LotjaGi1g1v0533700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGCATTGATACGGATCAACAAGGAATTAAGGGACATGGTCATGGATCCTCCTTTATTGTGTAACGGCGGCCCAGT CAGTGATGACTTGTTCCATTGGCAAGCTACCATTGTGGGCCCTAAAGGTAGCCCATATGCCCGTGGTGTGTTTCTTTTGT CAATTGAATTCACTAAAGATTATCCCTTCATACCACCCAAGGTTTCATTCCGCACAAAGATTTTCCATCCTAACATCCAT ACCAATGGTACTATTTGCCTTGACCTTCTCAAAGACGATTGGAGCCCTGCCCTTACAATATCCAAGGTTCTCATTTGTAT TGCCTCTCTGCTGACAAGTCCCAACACAGAGGATGCAGTGATGCCTGAGGTTGCTGAGATGTACAAGAATGACAGAGAAA TGTACGTGGCTACTGCTATGGCATGGACCCAGAAGTATGCCTTGCGTGGCGAGACTCCAAAGTTTTAA
Protein sequence (LotjaGi1g1v0533700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTALIRINKELRDMVMDPPLLCNGGPVSDDLFHWQATIVGPKGSPYARGVFLLSIEFTKDYPFIPPKVSFRTKIFHPNIH TNGTICLDLLKDDWSPALTISKVLICIASLLTSPNTEDAVMPEVAEMYKNDREMYVATAMAWTQKYALRGETPKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 154 | 153 | 6.3E-62 | ||
| SUPERFAMILY | 2 | 148 | 147 | 4.36E-57 | ||
| SMART | 5 | 148 | 144 | 5.3E-63 | – | |
| ProSiteProfiles | 5 | 137 | 133 | 40.537 | ||
| CDD | 6 | 143 | 138 | 2.52957E-61 | ||
| Pfam | 6 | 140 | 135 | 6.2E-46 | ||
| PANTHER | 7 | 150 | 144 | 2.7E-69 | – | |
| PANTHER | 7 | 150 | 144 | 2.7E-69 | – | |
| ProSitePatterns | 75 | 90 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0533700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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