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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0538500 |
| Transcript ID | LotjaGi1g1v0538500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 70-kDa heat shock protein; TAIR: AT5G02500.2 heat shock cognate protein 70-1; Swiss-Prot: sp|P27322|HSP72_SOLLC Heat shock cognate 70 kDa protein 2; TrEMBL-Plants: tr|F4KCE5|F4KCE5_ARATH Heat shock cognate protein 70-1; Found in the gene: LotjaGi1g1v0538500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106707804..106709961) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCGCGAAAGGAGATGGTCCCGCTATCGGAATCGACCTCGGCACCACCTACTCCTGCGTCGGAGTATGGCAGCACGA CCGTGTCGAAATCATCGCCAACGACCAGGGTAACCGTACCACCCCCTCTTACGTCGGTTTCACTGATTCCGAGCGTTTGA TCGGTGATGCTGCTAAGAATCAAGTCGCCATGAACCCTGTCAACACCGTCTCCGGTAACTTCCTCATCCCTGTGTCAATT GTGCATAGGTTTCTAGCTTGTTATTTCAACTATTCATAATTTGGGGTTAGGGTTAGGGTTTCTGTTAGTTGCTGCTTTTA CTAGTACTACATGATATGCTAGATTGGAACTTGCTTTGTTGTTGTGGTTATTGATTGTTTGAGGTGAGATTGCTGATTGG TGAATTGGATGTTTGATTGTAGATGCCAAGAGGTTGATTGGAAAGAGATTCTCTGACGCTTCTGTTCAGAGTGACATGAA GCTATGGCCATTCAAGGTTACTGCTGGACCTGCTGACAAGCCCATGATTGGTGTCACCTACAAGGGTGAGGAGAAGCAGT TTTCTGCTGAGGAGATCTCCTCCATGGTCCTCATTAAGATGCGTGAGATTGCCGAGGCTTATCTCGGTTCCACCGTGAAG AATGCTGTTGTTACTGTGCCAGCTTACTTCAATGACTCCCAGCGCCAGGCTACTAAGGATGCTGGTGTCATTGCTGGACT CAATGTCATGCGTATCATCAATGAACCCACTGCTGCTGCAATTGCTTATGGTCTTGACAAGAAGGCAACCAGTGTTGGTG AGAAGAATGTTTTGATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCTCTTCTTACTATTGAAGAGGGTATTTTTGAG GTTAAGGCCACTGCTGGAGACACCCATCTTGGAGGTGAAGATTTTGATAATAGGATGGTGAACCATTTTGTTCAGGAGTT CAAGAGGAAGAACAAGAAGGACATTAGTGGGAACCCCAGGGCTTTGAGAAGGTTGAGAACCGCATGTGAAAGGGCTAAGA GGACTCTCTCATCCACTGCACAGACCACAATTGAAATTGACTCCTTGTATGAAGGTGTTGATTTTTACACCACAATCACC CGTGCTAGATTTGAGGAGCTCAACATGGACCTCTTCAGGAAGTGTATGGAGCCAGTTGAGAAGTGTTTGAGGGATGCAAA GATGGACAAGAACAGTGTCCATGATGTTGTTCTTGTTGGTGGGTCTACTAGGATCCCCAAGGTGCAGTCTCTATTGCAGG ATTTCTTCAACGGGAAGGAGCTTTGCAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGAGCTGCTGTTCAGGCTGCT ATCTTGAGTGGTGAGGGTAATGAGAAGGTTCAGGATCTTCTGTTGTTGGATGTTACTCCCCTTTCCCTGGGTTTGGAAAC TGCCGGTGGTGTCATGACTGTTCTCATTCCAAGGAACACAACAATCCCAACCAAGAAGGAGCAAGTTTTCTCAACTTACT CGGACAACCAACCTGGTGTCTTGATCCAGGTGTACGAGGGTGAAAGAGCCAGAACCAGAGATAACAACTTGTTGGGTAAA TTTGAGCTTTCCGGTATTCCTCCAGCTCCAAGGGGAGTTCCTCAGATCACTGTTTGCTTTGACATTGATGCGAACGGTAT CTTGAATGTCTCTGCTGAGGACAAGACTACAGGGCAGAAGAACAAGATCACTATCACCAACGACAAGGGCAGGCTTTCAA AGGAGGAGATCGAAAAGATGGTGCAGGAGGCAGAGAAGTACAAGGCTGAGGATGAGGAACATAAGAAGAAGGTTGATGCT AAGAACGCCTTGGAAAACTATGCCTACAACATGAGGAACACTATCAAGGATGAAAAGATTGGGTCTAAGCTTTCTTCTGA TGATAAGAAGAAGATTGAAGATGCAATTGACCAAGCAATCCAATGGTTGGAGAGCAATCAGCTGGCTGAGGCTGACGAGT TTGAAGACAAGATGAAGGAGCTTGAGGGCCTTTGCAACCCAATCATTGCCAAGATGTACCAGGATGGAGGTGTTCCTGAC ATGGCTGGTGGAATGGAAGAAGATGTGCCACCATCTGCAGCCGGTGGTGCTGGCCCTAAGATCGAAGAAGTCGATTAA
CDS sequence (LotjaGi1g1v0538500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCGAAAGGAGATGGTCCCGCTATCGGAATCGACCTCGGCACCACCTACTCCTGCGTCGGAGTATGGCAGCACGA CCGTGTCGAAATCATCGCCAACGACCAGGGTAACCGTACCACCCCCTCTTACGTCGGTTTCACTGATTCCGAGCGTTTGA TCGGTGATGCTGCTAAGAATCAAGTCGCCATGAACCCTGTCAACACCGTCTCCGATGCCAAGAGGTTGATTGGAAAGAGA TTCTCTGACGCTTCTGTTCAGAGTGACATGAAGCTATGGCCATTCAAGGTTACTGCTGGACCTGCTGACAAGCCCATGAT TGGTGTCACCTACAAGGGTGAGGAGAAGCAGTTTTCTGCTGAGGAGATCTCCTCCATGGTCCTCATTAAGATGCGTGAGA TTGCCGAGGCTTATCTCGGTTCCACCGTGAAGAATGCTGTTGTTACTGTGCCAGCTTACTTCAATGACTCCCAGCGCCAG GCTACTAAGGATGCTGGTGTCATTGCTGGACTCAATGTCATGCGTATCATCAATGAACCCACTGCTGCTGCAATTGCTTA TGGTCTTGACAAGAAGGCAACCAGTGTTGGTGAGAAGAATGTTTTGATTTTTGACCTTGGTGGTGGTACTTTTGATGTCT CTCTTCTTACTATTGAAGAGGGTATTTTTGAGGTTAAGGCCACTGCTGGAGACACCCATCTTGGAGGTGAAGATTTTGAT AATAGGATGGTGAACCATTTTGTTCAGGAGTTCAAGAGGAAGAACAAGAAGGACATTAGTGGGAACCCCAGGGCTTTGAG AAGGTTGAGAACCGCATGTGAAAGGGCTAAGAGGACTCTCTCATCCACTGCACAGACCACAATTGAAATTGACTCCTTGT ATGAAGGTGTTGATTTTTACACCACAATCACCCGTGCTAGATTTGAGGAGCTCAACATGGACCTCTTCAGGAAGTGTATG GAGCCAGTTGAGAAGTGTTTGAGGGATGCAAAGATGGACAAGAACAGTGTCCATGATGTTGTTCTTGTTGGTGGGTCTAC TAGGATCCCCAAGGTGCAGTCTCTATTGCAGGATTTCTTCAACGGGAAGGAGCTTTGCAAGAGCATCAACCCTGATGAGG CTGTTGCTTATGGAGCTGCTGTTCAGGCTGCTATCTTGAGTGGTGAGGGTAATGAGAAGATGGTGCAGGAGGCAGAGAAG TACAAGGCTGAGGATGAGGAACATAAGAAGAAGGTTGATGCTAAGAACGCCTTGGAAAACTATGCCTACAACATGAGGAA CACTATCAAGGATGAAAAGATTGGGTCTAAGCTTTCTTCTGATGATAAGAAGAAGATTGAAGATGCAATTGACCAAGCAA TCCAATGGTTGGAGAGCAATCAGCTGGCTGAGGCTGACGAGTTTGAAGACAAGATGAAGGAGCTTGAGGGCCTTTGCAAC CCAATCATTGCCAAGATGTACCAGGATGGAGGTGTTCCTGACATGGCTGGTGGAATGGAAGAAGATGTGCCACCATCTGC AGCCGGTGGTGCTGGCCCTAAGATCGAAGAAGTCGATTAA
Protein sequence (LotjaGi1g1v0538500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDSERLIGDAAKNQVAMNPVNTVSDAKRLIGKR FSDASVQSDMKLWPFKVTAGPADKPMIGVTYKGEEKQFSAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQ ATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD NRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYTTITRARFEELNMDLFRKCM EPVEKCLRDAKMDKNSVHDVVLVGGSTRIPKVQSLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKMVQEAEK YKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIGSKLSSDDKKKIEDAIDQAIQWLESNQLAEADEFEDKMKELEGLCN PIIAKMYQDGGVPDMAGGMEEDVPPSAAGGAGPKIEEVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 394 | 391 | 0.0 | – | |
| PANTHER | 4 | 394 | 391 | 0.0 | ||
| PRINTS | 8 | 21 | 14 | 7.2E-64 | – | |
| SUPERFAMILY | 8 | 191 | 184 | 8.81E-69 | ||
| Pfam | 9 | 389 | 381 | 2.5E-181 | ||
| CDD | 9 | 387 | 379 | 0.0 | – | |
| Gene3D | 10 | 384 | 375 | 5.8E-176 | – | |
| ProSitePatterns | 12 | 19 | 8 | - | ||
| PRINTS | 36 | 48 | 13 | 7.2E-64 | – | |
| PRINTS | 58 | 66 | 9 | 7.2E-64 | – | |
| Gene3D | 71 | 118 | 48 | 5.8E-176 | – | |
| PRINTS | 146 | 166 | 21 | 7.2E-64 | – | |
| Gene3D | 192 | 371 | 180 | 5.8E-176 | – | |
| SUPERFAMILY | 198 | 388 | 191 | 1.36E-69 | ||
| ProSitePatterns | 203 | 216 | 14 | - | ||
| PRINTS | 209 | 219 | 11 | 7.2E-64 | – | |
| Gene3D | 235 | 312 | 78 | 5.8E-176 | – | |
| PRINTS | 337 | 353 | 17 | 7.2E-64 | – | |
| ProSitePatterns | 340 | 354 | 15 | - | ||
| PRINTS | 369 | 389 | 21 | 7.2E-64 | – | |
| Gene3D | 386 | 489 | 104 | 5.0E-38 | ||
| Coils | 391 | 411 | 21 | - | – | |
| Pfam | 392 | 488 | 97 | 9.4E-12 | ||
| PANTHER | 392 | 497 | 106 | 0.0 | ||
| PANTHER | 392 | 497 | 106 | 0.0 | – | |
| SUPERFAMILY | 413 | 494 | 82 | 2.75E-31 | ||
| Coils | 458 | 478 | 21 | - | – | |
| MobiDBLite | 493 | 519 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0538500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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