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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0538500 |
| Transcript ID | LotjaGi1g1v0538500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 70 kDa heat shock protein; TAIR: AT5G02500.1 heat shock cognate protein 70-1; Swiss-Prot: sp|P22953|MD37E_ARATH Probable mediator of RNA polymerase II transcription subunit 37e; TrEMBL-Plants: tr|G7KWU8|G7KWU8_MEDTR Heat shock cognate 70 kDa protein; Found in the gene: LotjaGi1g1v0538500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106707804..106709961) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCGCGAAAGGAGATGGTCCCGCTATCGGAATCGACCTCGGCACCACCTACTCCTGCGTCGGAGTATGGCAGCACGA CCGTGTCGAAATCATCGCCAACGACCAGGGTAACCGTACCACCCCCTCTTACGTCGGTTTCACTGATTCCGAGCGTTTGA TCGGTGATGCTGCTAAGAATCAAGTCGCCATGAACCCTGTCAACACCGTCTCCGGTAACTTCCTCATCCCTGTGTCAATT GTGCATAGGTTTCTAGCTTGTTATTTCAACTATTCATAATTTGGGGTTAGGGTTAGGGTTTCTGTTAGTTGCTGCTTTTA CTAGTACTACATGATATGCTAGATTGGAACTTGCTTTGTTGTTGTGGTTATTGATTGTTTGAGGTGAGATTGCTGATTGG TGAATTGGATGTTTGATTGTAGATGCCAAGAGGTTGATTGGAAAGAGATTCTCTGACGCTTCTGTTCAGAGTGACATGAA GCTATGGCCATTCAAGGTTACTGCTGGACCTGCTGACAAGCCCATGATTGGTGTCACCTACAAGGGTGAGGAGAAGCAGT TTTCTGCTGAGGAGATCTCCTCCATGGTCCTCATTAAGATGCGTGAGATTGCCGAGGCTTATCTCGGTTCCACCGTGAAG AATGCTGTTGTTACTGTGCCAGCTTACTTCAATGACTCCCAGCGCCAGGCTACTAAGGATGCTGGTGTCATTGCTGGACT CAATGTCATGCGTATCATCAATGAACCCACTGCTGCTGCAATTGCTTATGGTCTTGACAAGAAGGCAACCAGTGTTGGTG AGAAGAATGTTTTGATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCTCTTCTTACTATTGAAGAGGGTATTTTTGAG GTTAAGGCCACTGCTGGAGACACCCATCTTGGAGGTGAAGATTTTGATAATAGGATGGTGAACCATTTTGTTCAGGAGTT CAAGAGGAAGAACAAGAAGGACATTAGTGGGAACCCCAGGGCTTTGAGAAGGTTGAGAACCGCATGTGAAAGGGCTAAGA GGACTCTCTCATCCACTGCACAGACCACAATTGAAATTGACTCCTTGTATGAAGGTGTTGATTTTTACACCACAATCACC CGTGCTAGATTTGAGGAGCTCAACATGGACCTCTTCAGGAAGTGTATGGAGCCAGTTGAGAAGTGTTTGAGGGATGCAAA GATGGACAAGAACAGTGTCCATGATGTTGTTCTTGTTGGTGGGTCTACTAGGATCCCCAAGGTGCAGTCTCTATTGCAGG ATTTCTTCAACGGGAAGGAGCTTTGCAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGAGCTGCTGTTCAGGCTGCT ATCTTGAGTGGTGAGGGTAATGAGAAGGTTCAGGATCTTCTGTTGTTGGATGTTACTCCCCTTTCCCTGGGTTTGGAAAC TGCCGGTGGTGTCATGACTGTTCTCATTCCAAGGAACACAACAATCCCAACCAAGAAGGAGCAAGTTTTCTCAACTTACT CGGACAACCAACCTGGTGTCTTGATCCAGGTGTACGAGGGTGAAAGAGCCAGAACCAGAGATAACAACTTGTTGGGTAAA TTTGAGCTTTCCGGTATTCCTCCAGCTCCAAGGGGAGTTCCTCAGATCACTGTTTGCTTTGACATTGATGCGAACGGTAT CTTGAATGTCTCTGCTGAGGACAAGACTACAGGGCAGAAGAACAAGATCACTATCACCAACGACAAGGGCAGGCTTTCAA AGGAGGAGATCGAAAAGATGGTGCAGGAGGCAGAGAAGTACAAGGCTGAGGATGAGGAACATAAGAAGAAGGTTGATGCT AAGAACGCCTTGGAAAACTATGCCTACAACATGAGGAACACTATCAAGGATGAAAAGATTGGGTCTAAGCTTTCTTCTGA TGATAAGAAGAAGATTGAAGATGCAATTGACCAAGCAATCCAATGGTTGGAGAGCAATCAGCTGGCTGAGGCTGACGAGT TTGAAGACAAGATGAAGGAGCTTGAGGGCCTTTGCAACCCAATCATTGCCAAGATGTACCAGGATGGAGGTGTTCCTGAC ATGGCTGGTGGAATGGAAGAAGATGTGCCACCATCTGCAGCCGGTGGTGCTGGCCCTAAGATCGAAGAAGTCGATTAA
CDS sequence (LotjaGi1g1v0538500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTATGGCCATTCAAGGTTACTGCTGGACCTGCTGACAAGCCCATGATTGGTGTCACCTACAAGGGTGAGGAGAA GCAGTTTTCTGCTGAGGAGATCTCCTCCATGGTCCTCATTAAGATGCGTGAGATTGCCGAGGCTTATCTCGGTTCCACCG TGAAGAATGCTGTTGTTACTGTGCCAGCTTACTTCAATGACTCCCAGCGCCAGGCTACTAAGGATGCTGGTGTCATTGCT GGACTCAATGTCATGCGTATCATCAATGAACCCACTGCTGCTGCAATTGCTTATGGTCTTGACAAGAAGGCAACCAGTGT TGGTGAGAAGAATGTTTTGATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCTCTTCTTACTATTGAAGAGGGTATTT TTGAGGTTAAGGCCACTGCTGGAGACACCCATCTTGGAGGTGAAGATTTTGATAATAGGATGGTGAACCATTTTGTTCAG GAGTTCAAGAGGAAGAACAAGAAGGACATTAGTGGGAACCCCAGGGCTTTGAGAAGGTTGAGAACCGCATGTGAAAGGGC TAAGAGGACTCTCTCATCCACTGCACAGACCACAATTGAAATTGACTCCTTGTATGAAGGTGTTGATTTTTACACCACAA TCACCCGTGCTAGATTTGAGGAGCTCAACATGGACCTCTTCAGGAAGTGTATGGAGCCAGTTGAGAAGTGTTTGAGGGAT GCAAAGATGGACAAGAACAGTGTCCATGATGTTGTTCTTGTTGGTGGGTCTACTAGGATCCCCAAGGTGCAGTCTCTATT GCAGGATTTCTTCAACGGGAAGGAGCTTTGCAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGAGCTGCTGTTCAGG CTGCTATCTTGAGTGGTGAGGGTAATGAGAAGGTTCAGGATCTTCTGTTGTTGGATGTTACTCCCCTTTCCCTGGGTTTG GAAACTGCCGGTGGTGTCATGACTGTTCTCATTCCAAGGAACACAACAATCCCAACCAAGAAGGAGCAAGTTTTCTCAAC TTACTCGGACAACCAACCTGGTGTCTTGATCCAGGTGTACGAGGGTGAAAGAGCCAGAACCAGAGATAACAACTTGTTGG GTAAATTTGAGCTTTCCGGTATTCCTCCAGCTCCAAGGGGAGTTCCTCAGATCACTGTTTGCTTTGACATTGATGCGAAC GGTATCTTGAATGTCTCTGCTGAGGACAAGACTACAGGGCAGAAGAACAAGATCACTATCACCAACGACAAGGGCAGGCT TTCAAAGGAGGAGATCGAAAAGATGGTGCAGGAGGCAGAGAAGTACAAGGCTGAGGATGAGGAACATAAGAAGAAGGTTG ATGCTAAGAACGCCTTGGAAAACTATGCCTACAACATGAGGAACACTATCAAGGATGAAAAGATTGGGTCTAAGCTTTCT TCTGATGATAAGAAGAAGATTGAAGATGCAATTGACCAAGCAATCCAATGGTTGGAGAGCAATCAGCTGGCTGAGGCTGA CGAGTTTGAAGACAAGATGAAGGAGCTTGAGGGCCTTTGCAACCCAATCATTGCCAAGATGTACCAGGATGGAGGTGTTC CTGACATGGCTGGTGGAATGGAAGAAGATGTGCCACCATCTGCAGCCGGTGGTGCTGGCCCTAAGATCGAAGAAGTCGAT TAA
Protein sequence (LotjaGi1g1v0538500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLWPFKVTAGPADKPMIGVTYKGEEKQFSAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIA GLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQ EFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYTTITRARFEELNMDLFRKCMEPVEKCLRD AKMDKNSVHDVVLVGGSTRIPKVQSLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGL ETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDAN GILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIGSKLS SDDKKKIEDAIDQAIQWLESNQLAEADEFEDKMKELEGLCNPIIAKMYQDGGVPDMAGGMEEDVPPSAAGGAGPKIEEVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 539 | 539 | 0.0 | ||
| PANTHER | 1 | 539 | 539 | 0.0 | – | |
| Pfam | 1 | 529 | 529 | 1.0E-218 | ||
| Gene3D | 1 | 29 | 29 | 3.6E-135 | – | |
| SUPERFAMILY | 2 | 102 | 101 | 1.26E-32 | ||
| Gene3D | 30 | 295 | 266 | 3.6E-135 | – | |
| PRINTS | 57 | 77 | 21 | 2.6E-65 | – | |
| Gene3D | 103 | 282 | 180 | 3.6E-135 | – | |
| SUPERFAMILY | 109 | 299 | 191 | 1.54E-69 | ||
| ProSitePatterns | 114 | 127 | 14 | - | ||
| PRINTS | 120 | 130 | 11 | 2.6E-65 | – | |
| Gene3D | 146 | 223 | 78 | 3.6E-135 | – | |
| PRINTS | 248 | 264 | 17 | 2.6E-65 | – | |
| ProSitePatterns | 251 | 265 | 15 | - | ||
| PRINTS | 280 | 300 | 21 | 2.6E-65 | – | |
| Gene3D | 298 | 426 | 129 | 1.6E-64 | ||
| SUPERFAMILY | 303 | 460 | 158 | 1.7E-65 | ||
| PRINTS | 307 | 326 | 20 | 2.6E-65 | – | |
| PRINTS | 388 | 404 | 17 | 2.6E-65 | – | |
| Gene3D | 427 | 530 | 104 | 3.3E-40 | ||
| Coils | 429 | 452 | 24 | - | – | |
| SUPERFAMILY | 454 | 535 | 82 | 3.14E-31 | ||
| Coils | 499 | 519 | 21 | - | – | |
| MobiDBLite | 534 | 560 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0538500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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