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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0550100 |
| Transcript ID | LotjaGi1g1v0550100.3 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribulose bisphosphate carboxylase small chain; TAIR: AT5G38410.1 Ribulose bisphosphate carboxylase (small chain) family protein; Swiss-Prot: sp|P00869|RBS2_PEA Ribulose bisphosphate carboxylase small chain 3C, chloroplastic; TrEMBL-Plants: tr|I3T692|I3T692_LOTJA Ribulose bisphosphate carboxylase small chain; Found in the gene: LotjaGi1g1v0550100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108028014..108029086) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCCTCTATGATCACTTCCTCCGCCGTCACCACCATTAATGGTGCCTCCCCGGCACAGGCCAACATGGTGGCTCC ATTCACTGGCCTCAAGTCCATGGCTGGCTTCCCAGTTAGAAAGACCAACACTGACATTACCTCCATTGCAAGCAACGGTG GAAGAGTACAATGCATGCAGGTAAGATGCCTCAAAATGATTACAATGCATCTTACATATTTTTTGTACCATAATAAGGTT ACTTAAATTAATACCAAGTTTGGATCAGCTTCTATCTCCTCATAATCAATTTTGACACATAAAAGCTACTTGCAAAAGCT TCTCCCAAGAATTGATTATGGGTTTAGAATCAATTGTGGAAATGACATTAAAGTCATTGGCAAATGTAAACAAGTACAAA TTTGCTTACCTCTTTACTCAATCTTATGCATACTACTAGGTGTGGCCTCCTGTTGGCAAGAAGAAGTTTGAGACTCTTTC ATACCTGCCACCACTCACCACAGAGCAACTATTAAAGGAAGTGGAATACCTTCTTAGGAAGGGGTGGGTTCCTTGCTTGG AATTTGAGACGGAGGTCAATTCTCTTCAAACCCTTTGGTTCTTTACTTTGTTATTTTTCATTATTAGCATTTTTGGTTCT GCCGTAGAAAGTTTCATAATCACTTGAGAAAAACTACAAATAGCAGGTTGGATTGATGTTACACACAATCCAAAGCATGA TATGTTCAGAAACAACACTTTGTAGCTTCTCTCTATAATTGATTACGAGACTTCTCACCACAGAATCAAACACGCTAAAA GTATCGTGATGATGATCTGTTTGCTGCATTTTGTATGTGCAGAAAGGCTTTGTCTACCGTGAGAACCACAAGTCACCTGG ATACTATGACGGACGCTACTGGACCATGTGGAAGCTCCCCATGTTTGGGTGCAGTGATGCTGCCCAGGTGTTGAAGGAAC TTGATGAGGCTGTGAAGGCATACCCGACCGCTTTTGTGCGCATCATTGGATTCGACAATGTTCGCCAAGTGCAGTGCATC AGCTTCATTGCACACAGGCCAGCAGGCTACTAA
CDS sequence (LotjaGi1g1v0550100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCTCTATGATCACTTCCTCCGCCGTCACCACCATTAATGGTGCCTCCCCGGCACAGGCCAACATGGTGGCTCC ATTCACTGGCCTCAAGTCCATGGCTGGCTTCCCAGTTAGAAAGACCAACACTGACATTACCTCCATTGCAAGCAACGGTG GAAGAGTACAATGCATGCAGGTGTGGCCTCCTGTTGGCAAGAAGAAGTTTGAGACTCTTTCATACCTGCCACCACTCACC ACAGAGCAACTATTAAAGGAAGTGGAATACCTTCTTAGGAAGGGGTGGGTTCCTTGCTTGGAATTTGAGACGGAGAAAGG CTTTGTCTACCGTGAGAACCACAAGTCACCTGGATACTATGACGGACGCTACTGGACCATGTGGAAGCTCCCCATGTTTG GGTGCAGTGATGCTGCCCAGGTGTTGAAGGAACTTGATGAGGCTGTGAAGGCATACCCGACCGCTTTTGTGCGCATCATT GGATTCGACAATGTTCGCCAAGTGCAGTGCATCAGCTTCATTGCACACAGGCCAGCAGGCTACTAA
Protein sequence (LotjaGi1g1v0550100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLT TEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRII GFDNVRQVQCISFIAHRPAGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 180 | 180 | 4.4E-99 | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 180 | 180 | 4.4E-99 | – | |
| Pfam | 2 | 45 | 44 | 1.0E-21 | ||
| Phobius | 6 | 14 | 9 | - | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| PRINTS | 21 | 38 | 18 | 2.1E-75 | ||
| Phobius | 23 | 181 | 159 | - | – | |
| PRINTS | 47 | 65 | 19 | 2.1E-75 | ||
| SUPERFAMILY | 59 | 180 | 122 | 6.54E-56 | ||
| Gene3D | 59 | 181 | 123 | 4.6E-63 | ||
| PRINTS | 68 | 94 | 27 | 2.1E-75 | ||
| CDD | 68 | 178 | 111 | 4.49138E-62 | – | |
| SMART | 69 | 178 | 110 | 2.9E-39 | ||
| Pfam | 70 | 178 | 109 | 1.5E-39 | ||
| PRINTS | 96 | 111 | 16 | 2.1E-75 | ||
| PRINTS | 118 | 147 | 30 | 2.1E-75 | ||
| PRINTS | 152 | 178 | 27 | 2.1E-75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0550100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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