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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0550100 |
| Transcript ID | LotjaGi1g1v0550100.6 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribulose bisphosphate carboxylase small chain; TAIR: AT1G67090.1 ribulose bisphosphate carboxylase small chain 1A; Swiss-Prot: sp|P07689|RBS3_PEA Ribulose bisphosphate carboxylase small chain 3A, chloroplastic; TrEMBL-Plants: tr|I3SR29|I3SR29_LOTJA Ribulose bisphosphate carboxylase small chain; Found in the gene: LotjaGi1g1v0550100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108044632..108046596) extracted from Lotus japonicus Gifu genome v1.2.
AGGGAGTATAACTTTTCCCTGACTCAAACCCAAGGCTAATTTCTCAAGTTTCTGTTTCAAATTTTAAAATTCGGGTCCAT TAACATATCCTTTTGAGTTTTTCCCTGAAGAAAATTCTAAAAAGTTGTTCTTGGGGGAGGATTATTACAACCCAGATATA ATTTTGTGGACTACACTGGCTGTGGCGTCAAGCTCTTATCATGATATGATTTCTTTGGTTCATATTCTACAATGTTTATC ATTTCGGCAATATATATACCCTGTTTGAGTAGAAGCTTTGCAAGTATTTCTGACTAGAGAACTGAAAAAGGAGAAAAAAT GGCTTCCTCTATGATCACCTCCTCAGCTGCCGCCACCACCATTAAAGGTGCCTCTCCGGCACAGGCCAGCATGGTGGCTC CATTCACTGGCCTCAAGTCCATGGCTGGCTTCCCAGTTAGAAAGACAAACAATGACATTACCTCCATTGCAAACAACGGT GGAAGAGTACAATGCATGCAGGTAAGATGCCTCAAAATGATTACAATGCTACAAATTTTTGTACCACAGCTTCTAGCTAT TCCATTCTAACCAATTCTGACAAAGAAGACACTCACGTAAGTTTCTTCCCATAATTGCGGAAGAGATTTGAAACATGTAC TAAATGATAGTATTAAAGTCCTTGACGACAAATTTGTTAACCAATTTACTCAATCTTATGCATGCTACTAGGTGTGGCCT CCTGTTGGCAAGAAGAAGTTCGAGACTCTTTCATACCTTCCACCACTCACCACAGAGCAACTCTTAAAGGAAGTAGAATA CCTTCTTAGGAAGGGTTGGGTTCCTTGCTTGGAATTCGAGACAGAGGTCAATTTACTTCCAACCCTTTGGTTCTTTACTT TCTAGTGTTTCATTATTAGGCTTATAGTTATGTGGTAGGAAGTCCTATAATCACTTCCCCGGAGAAGCTACAAATAGTAG ATTTGGATTGGTGGTGTCACACAATTCAAAGCTCAAGTTCAGAAGCAACACTTTGTAGCTTCTCTCTGCAATTGACTATG AGACTTCTCACTGCATAATCGAACAAGCTAAAAGTATGGTGATTTGAAATGTGTGTCACCACCAATTCAAACATATGCAT ATAATTTTGAAGTTTGATGGTTGATTTCTTGCTTGGAATTCGAGTTGGAGGTAAATTTACCTCCAGCCCTTGTTTCAGTT GTTTGGTTCTGTGGTGAGAAGTCTCATAATCTCTTCTGGACAGAAGCTACAAAGTGCAGCTTCTGGAGTTATCAATAATT TTGAGTTTTGATGGTTGATGAACTGTTTGCTGCATTTTGTGTGTGCAGAAAGGCTTTGTCTACCGTGAGAACCACAAGTC ACCTGGATACTATGACGGACGCTACTGGACCATGTGGAAGCTCCCCATGTTTGGGTGCAGTGATGCTACCCAGGTGTTGA AGGAACTTGATGAGGCTGTGAAGGCATACCCCAACGCTTTTGTGCGCATCATTGGATTCGACAATGTTCGCCAAGTGCAG TGCATCAGTTTCATTGCACACAGACCAGCAGGCTACTAAGTTTGAAATCTACATACAAAAAGGCATTTGTAGCCTCCCCC TTCTTCCCATGTGTTCAGTTTTTTCTTTTTCTTTTTACAAGAGAAATGCCATCCTATATTTTGGCATTTTTTGTTTGAGT TTCACATTTGCAAATTTGCATAGGCAAATGAATGGATAAGAGCACTTGAATGAATAATTGCTTTGTTCCCAAATTTCTTA ATAACTCATTATCTGTGGTTGTCCTTCCAGTGGATTGAAATTTATGGAATGTTTTACAAAGAAATGAACTTATGGTATGA TATTGTGGTAAAGTGACAGATAAATATAACAGCCAAATACCTCCCTTTAATATTTTGTATATTTTTAGCCTTTCTGCACA CACAAAATGGAGCAAAATGCTTATAAATAAGGATATATTAAGTTC
CDS sequence (LotjaGi1g1v0550100.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCTCTATGATCACCTCCTCAGCTGCCGCCACCACCATTAAAGGTGCCTCTCCGGCACAGGCCAGCATGGTGGC TCCATTCACTGGCCTCAAGTCCATGGCTGGCTTCCCAGTTAGAAAGACAAACAATGACATTACCTCCATTGCAAACAACG GTGGAAGAGTACAATGCATGCAGGTGTGGCCTCCTGTTGGCAAGAAGAAGTTCGAGACTCTTTCATACCTTCCACCACTC ACCACAGAGCAACTCTTAAAGGAAGTAGAATACCTTCTTAGGAAGGGTTGGGTTCCTTGCTTGGAATTCGAGACAGAGAA AGGCTTTGTCTACCGTGAGAACCACAAGTCACCTGGATACTATGACGGACGCTACTGGACCATGTGGAAGCTCCCCATGT TTGGGTGCAGTGATGCTACCCAGGTGTTGAAGGAACTTGATGAGGCTGTGAAGGCATACCCCAACGCTTTTGTGCGCATC ATTGGATTCGACAATGTTCGCCAAGTGCAGTGCATCAGTTTCATTGCACACAGACCAGCAGGCTACTAA
Protein sequence (LotjaGi1g1v0550100.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSMITSSAAATTIKGASPAQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPL TTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDATQVLKELDEAVKAYPNAFVRI IGFDNVRQVQCISFIAHRPAGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 181 | 181 | 4.5E-99 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 181 | 181 | 4.5E-99 | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Pfam | 2 | 46 | 45 | 2.8E-19 | ||
| Phobius | 6 | 15 | 10 | - | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| PRINTS | 22 | 39 | 18 | 5.1E-75 | ||
| Phobius | 24 | 182 | 159 | - | – | |
| PRINTS | 48 | 66 | 19 | 5.1E-75 | ||
| Gene3D | 60 | 182 | 123 | 1.9E-63 | ||
| SUPERFAMILY | 60 | 181 | 122 | 3.01E-56 | ||
| PRINTS | 69 | 95 | 27 | 5.1E-75 | ||
| CDD | 69 | 179 | 111 | 2.33878E-62 | – | |
| SMART | 70 | 179 | 110 | 4.5E-39 | ||
| Pfam | 71 | 179 | 109 | 8.3E-40 | ||
| PRINTS | 97 | 112 | 16 | 5.1E-75 | ||
| PRINTS | 119 | 148 | 30 | 5.1E-75 | ||
| PRINTS | 153 | 179 | 27 | 5.1E-75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0550100.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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