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LotjaGi1g1v0550100.6

Overview

Field Value
Gene ID LotjaGi1g1v0550100
Transcript ID LotjaGi1g1v0550100.6
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Ribulose bisphosphate carboxylase small chain; TAIR: AT1G67090.1 ribulose bisphosphate carboxylase small chain 1A; Swiss-Prot: sp|P07689|RBS3_PEA Ribulose bisphosphate carboxylase small chain 3A, chloroplastic; TrEMBL-Plants: tr|I3SR29|I3SR29_LOTJA Ribulose bisphosphate carboxylase small chain; Found in the gene: LotjaGi1g1v0550100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:108044632..108046596) extracted from Lotus japonicus Gifu genome v1.2.

AGGGAGTATAACTTTTCCCTGACTCAAACCCAAGGCTAATTTCTCAAGTTTCTGTTTCAAATTTTAAAATTCGGGTCCAT TAACATATCCTTTTGAGTTTTTCCCTGAAGAAAATTCTAAAAAGTTGTTCTTGGGGGAGGATTATTACAACCCAGATATA ATTTTGTGGACTACACTGGCTGTGGCGTCAAGCTCTTATCATGATATGATTTCTTTGGTTCATATTCTACAATGTTTATC ATTTCGGCAATATATATACCCTGTTTGAGTAGAAGCTTTGCAAGTATTTCTGACTAGAGAACTGAAAAAGGAGAAAAAAT GGCTTCCTCTATGATCACCTCCTCAGCTGCCGCCACCACCATTAAAGGTGCCTCTCCGGCACAGGCCAGCATGGTGGCTC CATTCACTGGCCTCAAGTCCATGGCTGGCTTCCCAGTTAGAAAGACAAACAATGACATTACCTCCATTGCAAACAACGGT GGAAGAGTACAATGCATGCAGGTAAGATGCCTCAAAATGATTACAATGCTACAAATTTTTGTACCACAGCTTCTAGCTAT TCCATTCTAACCAATTCTGACAAAGAAGACACTCACGTAAGTTTCTTCCCATAATTGCGGAAGAGATTTGAAACATGTAC TAAATGATAGTATTAAAGTCCTTGACGACAAATTTGTTAACCAATTTACTCAATCTTATGCATGCTACTAGGTGTGGCCT CCTGTTGGCAAGAAGAAGTTCGAGACTCTTTCATACCTTCCACCACTCACCACAGAGCAACTCTTAAAGGAAGTAGAATA CCTTCTTAGGAAGGGTTGGGTTCCTTGCTTGGAATTCGAGACAGAGGTCAATTTACTTCCAACCCTTTGGTTCTTTACTT TCTAGTGTTTCATTATTAGGCTTATAGTTATGTGGTAGGAAGTCCTATAATCACTTCCCCGGAGAAGCTACAAATAGTAG ATTTGGATTGGTGGTGTCACACAATTCAAAGCTCAAGTTCAGAAGCAACACTTTGTAGCTTCTCTCTGCAATTGACTATG AGACTTCTCACTGCATAATCGAACAAGCTAAAAGTATGGTGATTTGAAATGTGTGTCACCACCAATTCAAACATATGCAT ATAATTTTGAAGTTTGATGGTTGATTTCTTGCTTGGAATTCGAGTTGGAGGTAAATTTACCTCCAGCCCTTGTTTCAGTT GTTTGGTTCTGTGGTGAGAAGTCTCATAATCTCTTCTGGACAGAAGCTACAAAGTGCAGCTTCTGGAGTTATCAATAATT TTGAGTTTTGATGGTTGATGAACTGTTTGCTGCATTTTGTGTGTGCAGAAAGGCTTTGTCTACCGTGAGAACCACAAGTC ACCTGGATACTATGACGGACGCTACTGGACCATGTGGAAGCTCCCCATGTTTGGGTGCAGTGATGCTACCCAGGTGTTGA AGGAACTTGATGAGGCTGTGAAGGCATACCCCAACGCTTTTGTGCGCATCATTGGATTCGACAATGTTCGCCAAGTGCAG TGCATCAGTTTCATTGCACACAGACCAGCAGGCTACTAAGTTTGAAATCTACATACAAAAAGGCATTTGTAGCCTCCCCC TTCTTCCCATGTGTTCAGTTTTTTCTTTTTCTTTTTACAAGAGAAATGCCATCCTATATTTTGGCATTTTTTGTTTGAGT TTCACATTTGCAAATTTGCATAGGCAAATGAATGGATAAGAGCACTTGAATGAATAATTGCTTTGTTCCCAAATTTCTTA ATAACTCATTATCTGTGGTTGTCCTTCCAGTGGATTGAAATTTATGGAATGTTTTACAAAGAAATGAACTTATGGTATGA TATTGTGGTAAAGTGACAGATAAATATAACAGCCAAATACCTCCCTTTAATATTTTGTATATTTTTAGCCTTTCTGCACA CACAAAATGGAGCAAAATGCTTATAAATAAGGATATATTAAGTTC 

CDS sequence (LotjaGi1g1v0550100.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCCTCTATGATCACCTCCTCAGCTGCCGCCACCACCATTAAAGGTGCCTCTCCGGCACAGGCCAGCATGGTGGC TCCATTCACTGGCCTCAAGTCCATGGCTGGCTTCCCAGTTAGAAAGACAAACAATGACATTACCTCCATTGCAAACAACG GTGGAAGAGTACAATGCATGCAGGTGTGGCCTCCTGTTGGCAAGAAGAAGTTCGAGACTCTTTCATACCTTCCACCACTC ACCACAGAGCAACTCTTAAAGGAAGTAGAATACCTTCTTAGGAAGGGTTGGGTTCCTTGCTTGGAATTCGAGACAGAGAA AGGCTTTGTCTACCGTGAGAACCACAAGTCACCTGGATACTATGACGGACGCTACTGGACCATGTGGAAGCTCCCCATGT TTGGGTGCAGTGATGCTACCCAGGTGTTGAAGGAACTTGATGAGGCTGTGAAGGCATACCCCAACGCTTTTGTGCGCATC ATTGGATTCGACAATGTTCGCCAAGTGCAGTGCATCAGTTTCATTGCACACAGACCAGCAGGCTACTAA 

Protein sequence (LotjaGi1g1v0550100.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSMITSSAAATTIKGASPAQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPL TTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDATQVLKELDEAVKAYPNAFVRI IGFDNVRQVQCISFIAHRPAGY 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 23 23 -
PANTHER 1 181 181 4.5E-99
Phobius 1 5 5 -
PANTHER 1 181 181 4.5E-99
SignalP_GRAM_POSITIVE 1 23 23 -
Pfam 2 46 45 2.8E-19
Phobius 6 15 10 -
Phobius 16 23 8 -
PRINTS 22 39 18 5.1E-75
Phobius 24 182 159 -
PRINTS 48 66 19 5.1E-75
Gene3D 60 182 123 1.9E-63
SUPERFAMILY 60 181 122 3.01E-56
PRINTS 69 95 27 5.1E-75
CDD 69 179 111 2.33878E-62
SMART 70 179 110 4.5E-39
Pfam 71 179 109 8.3E-40
PRINTS 97 112 16 5.1E-75
PRINTS 119 148 30 5.1E-75
PRINTS 153 179 27 5.1E-75

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0550100.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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