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LotjaGi1g1v0562500.3

Overview

Field Value
Gene ID LotjaGi1g1v0562500
Transcript ID LotjaGi1g1v0562500.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description V-type proton ATPase proteolipid subunit; TAIR: AT1G75630.2 vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4; Swiss-Prot: sp|O22552|VATL_VIGRR V-type proton ATPase 16 kDa proteolipid subunit; TrEMBL-Plants: tr|A0A0D3DHQ4|A0A0D3DHQ4_BRAOL V-type proton ATPase proteolipid subunit; Found in the gene: LotjaGi1g1v0562500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:109457200..109458233) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTGGCTTCAGCGGTGATGAAACTGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTTGTCTTCTCCTGTAA TCTCTTCCTCCTATCTCATCTCAATTAGATCTTTATTTTTCATCCCATAATATCTTGTCAATTTCAATTTTAATGAAATT TCTTGTTCGAAATCGTATATGTCGTTTTAGTTTTAAGCTTCTAGGTCTTATTGGTTGTTGATTTAGTTATGCTTTGATCG GATCGGATTTTGAACTTTTTATGTAGGATTCAATTAGTTAGGCGCAGATCGTTAACTTTAACATGTGTAATTTGTTAGTT AATTTGATGTGTGATGTGAGTAAATCAGAATGATTTCATGAACAAAGAGTCATTGCACTTTATTGAATTCCGAAGCTTCG CCATTATTATTCTGTTATCAATAATTAATCACCGAGAATTTCATATAATTTGAATTCTCTTGCGTGTTAACTATCGAATT TGTAAGCATCTCCATTATTATTAGTTATTGTGCTATTATTGAGAATTTCATATAATTTGAATTGTTGTTGGCACTGGAAG GTATGGGAGCTGCGTATGGCACAGCAAAGAGTGGTGTGGGAGTGGCTTCCATGGGTGTGATGAGACCGGAGTTGGTGATG AAGTCTATTGTTCCTGTTGTCATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCGGTCATCATTAGTACCGGTAT TAACCCAAAGGCCAAATCTTATTATCTCTTTGATGGCTATGCACATCTCTCCTCTGGTCTTGCCTGTGGCTTGGCTGGAC TCTCCGCTGGCATGGCTATTGGTATAGTTGGCGATGCTGGTGTTAGGTATCTATACTATAACCCTTCCTCTTGTTTCTCA TATATGATTCATTGGTTGATTGATTATTTCTCATATGATTATTTTAATTTGTTCTTAATTGCTTCTATTCTATTGCCTTA TTGAATTGTAAATCAATAAGCGATTCAATATTTAGGTCCTTGAATATATCATTACATTGCAAAACGTTCTCTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0562500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGGCTTCAGCGGTGATGAAACTGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTTGTCTTCTCCTGTAT GGGAGCTGCGTATGGCACAGCAAAGAGTGGTGTGGGAGTGGCTTCCATGGGTGTGATGAGACCGGAGTTGGTGATGAAGT CTATTGTTCCTGTTGTCATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCGGTCATCATTAGTACCGGTATTAAC CCAAAGGCCAAATCTTATTATCTCTTTGATGGCTATGCACATCTCTCCTCTGGTCTTGCCTGTGGCTTGGCTGGACTCTC CGCTGGCATGGCTATTGGTATAGTTGGCGATGCTGGTGTTCTCTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0562500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN PKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 11 11 - –
PANTHER
PTHR10263
2 120 119 3.0E-74 –
PANTHER
PTHR10263:SF49
2 120 119 3.0E-74 –
Gene3D
G3DSA:1.20.120.610
10 121 112 3.6E-40 –
SUPERFAMILY
SSF81333
12 76 65 1.06E-6
IPR035921
TIGRFAM
TIGR01100
12 120 109 2.6E-52
IPR011555
Phobius
TRANSMEMBRANE
12 34 23 - –
TMHMM
TMhelix
12 34 23 - –
CDD
cd18175
12 79 68 2.70382E-30 –
Pfam
PF00137
16 75 60 3.0E-14
IPR002379
PRINTS
PR00122
29 53 25 3.2E-37
IPR000245
Phobius
CYTOPLASMIC_DOMAIN
35 54 20 - –
TMHMM
TMhelix
54 76 23 - –
PRINTS
PR00122
55 79 25 3.2E-37
IPR000245
Phobius
TRANSMEMBRANE
55 79 25 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
80 90 11 - –
SUPERFAMILY
SSF81333
86 120 35 4.71E-5
IPR035921
CDD
cd18176
88 120 33 1.71508E-9 –
Phobius
TRANSMEMBRANE
91 115 25 - –
TMHMM
TMhelix
93 115 23 - –
PRINTS
PR00122
106 121 16 3.2E-37
IPR000245
Phobius
CYTOPLASMIC_DOMAIN
116 121 6 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0015078
Molecular function Proton transmembrane transporter activity Enables the transfer of a proton from one side of a membrane to the other.
Subterm of
GO:0033177
Cellular component Proton-transporting two-sector ATPase complex, proton-transporting domain A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins.
Subterm of
Part of
GO:0033179
Cellular component Proton-transporting V-type ATPase, V0 domain A protein complex that forms part of a proton-transporting V-type ATPase and mediates proton transport across a membrane. The V0 complex consists of at least four different subunits (a,c,d and e); six or more c subunits form a proton-binding rotor ring.
Subterm of
Part of
GO:1902600
Biological process Proton transmembrane transport The directed movement of a proton across a membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0562500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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