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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0569800 |
| Transcript ID | LotjaGi1g1v0569800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1; TrEMBL-Plants: tr|A0A0B2QK00|A0A0B2QK00_GLYSO RNA-binding protein 24; Found in the gene: LotjaGi1g1v0569800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110256192..110258810) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGTACCAGGCGATTCAGGGTTCGAGTTCAGGATCGAGTTCGGGGTTTCAAATGGTGAATTCTCCGTTCGGTGACAC CACTTTCACCAAGGTCTTCGTTGGTGGATTGGCTTGGGAGACTCAGAGTGAAACCATGCGTCGTTACTTTGAGCAATTCG GGGAGATTCTTGAGGCGGTTGTGATCACTGATAAGAACACTGGGCGATCCAAAGGCTATGGTTTTGTGAGTATTTTTGTT ATTCCATTTTTCTCCTTTATTCTGCATGTAGAATGACTGGGTTTGTATCTCATCTGCATGGAATTGGAGGGTATAGGTGA CTTTCCGGGATCCCGAGGCTGCAAGGAGAGCCTGTGCTGATCCAGCTCCTGTCATTGATGGTAGAAGGGCTAATTGTAAC TTGGCTTCACTTGGTCGACCACGCCCACCTCTTCCCTATGGTATGGTATTATTGAATTTCTTAACTATGCCTAATTGCTT GTTTGAAAATTCTTACAATTAGTTCTAAAGTTAAAATCAATTTTAGAGAGAAATTTGTGAGAGTACTAGTAGCTGAAATG CTTGAATTATAATGAGAAAAGAGAAGTTAATCAAGTGTGGATTTCCGTGCTTCCAGACTCTGGTTTTAGGGGAGAATTGA ATTGATTGATTCAGACACTATGATTGATACATGTTATGAGGGGCATGCTAAAATTTAATTGTGAACTCGGGTTTTTACAT TGACTGATTTTTATATCATTTAATTATGTCACTTCAGCATTATTGTCGTTTGTGGTTCTTATTGTTATTCATTATTATTG GAATGGAATCCCGCACTGGCATGCCTCTGTTATCCATTTCTCTATTATTCATTGTATATCTCCTGCACTGTTAAGTTTAC TTTTCTAACCTGCTGCGTTCATCTGAAAAAAACAAACTTATTCTTGTATTAATTACTCCAACCATATCTACCTTCCATAC ATTTCATTTGTCTGTTATCACAACACAGGTCACATCTATGACATAACTTTATTCTCTTCCTTTCTCATTGTGTTGATTTT GGGTGTCTGAAACCATGGATAATATCTCCTAACCATTACTGTTCTTGTATAAAATGAAAGGCCTGGGTAATTTATGGACC GCAATTAATTATTAACTTATGTTCCTGTCCTGTCACGTGAAATGGAATCTGTCTTTTAAACAGTCTTTTGGTTTTGCTTC AACAATTTTGTTTAACTCAAGCTAATATTTTTCTGTTCTTGACATGTTTAGAAGTCTGCTGTAGCGTAAGCATTTTATGT TACAGTTCTTACCTACTTTCATCTTTTGATTGCTTCTGTTGTCCTTTTGTAGGTCGGATAAGACCAGCCTCCCATTATGT TGGAAGTTTGCAACCAGCACGTGGTTCTTATGTTGGAGGTTTTGGCTACCAGCAGCAGCCACTTTCCTACGGCTATCAAC AAGGATTGGTATATCCTCCTTATGGGTAAGTGGGCTGACGTTGCACATCACTGCAAACTTAGAAGATGTAATTTCAATGC TCATAAATATTCTCTCGTCTTTTCTTGATAATTGTAAGTGTTAATACTTCCTACTTTAATATCTGTAGTATTGCTATTAC TACACTCATCATCAACTCATATTTTTTTGTGACTGTTAAATAATGGTGATCTGATGACCATTAAGGTCAAGTAGACGCAT ATCCATGCAAGGGCCTGTTTAATCCTCATTATTTCTTTCTGTGGCAATCTACACAACTGTGGCAATCTACACAAACCAAT CCCAACACAGTATCCTCGTGGTAGTGGTTAGTTAGGAGGGAAAAATCTCGAGAGTGAGGGATTTGGTCATTACTTGTCCA TTATATCAGGAGAACCTATTTCAATTAGATTTCATAAACTTATTTATCTCCATGCGTGTGACATGTTCCTAACTACATTT GCATTGTGCATCAGGATGTATTACACCAGAATCATGCTATAGAGGTGATCTTTTCAACATTATGTGGTTGTTTTATCTTT GCAGGTATACGACGTATGGACCTGAATACATCTACCCACAGGTCGATTGTTTTTTCTTTTAAAATTGGCTTAAGAAGAAT GTTATATTTTTGTGTGTATTGCTGACATTTTAACCTTCTGCTATCTTGTCTAATAGAATGTGTACAACCCATATGTGGGT CAGCAGTACCTTCAGATATATGGAGTGCCTGGGGCAGTGAACACTACTGTTTATCCTTATGGACAATTGGGTCAGACTAT TCCTAGTGGTCACGGTTATACAGCAATGCCAGGTTATACTGTACCAGCTCATCAGATTGTGCCGTACGGCGGATCCAGTG TTAATTCCATAACAACTTCACCTATGCCTGCCATTCAAGCATCATATCCTAGTGGTATAGTTATCTGCTCTGAAGAATCA CTATTTTTGACTTAAGCTCTGCCTTTTTGTTGCCTTCGGAACATGCATTTTACTTTTAAAATGTCTCAATTTTAATTCAT GCTGCCTTACTTTTCCTGTCATTGAAAGACTGCTAATTCATATTTGATGTAGTATCAACATCCATCTTCGGTGGGCATTC TTTGAGAAACAAATGCCCATATGTATTGGAAATGACATCCCTTAGAAAACACTTCAGCA
CDS sequence (LotjaGi1g1v0569800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTACCAGGCGATTCAGGGTTCGAGTTCAGGATCGAGTTCGGGGTTTCAAATGGTGAATTCTCCGTTCGGTGACAC CACTTTCACCAAGGTCTTCGTTGGTGGATTGGCTTGGGAGACTCAGAGTGAAACCATGCGTCGTTACTTTGAGCAATTCG GGGAGATTCTTGAGGCGGTTGTGATCACTGATAAGAACACTGGGCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGAT CCCGAGGCTGCAAGGAGAGCCTGTGCTGATCCAGCTCCTGTCATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCACT TGGTCGACCACGCCCACCTCTTCCCTATGGTCGGATAAGACCAGCCTCCCATTATGTTGGAAGTTTGCAACCAGCACGTG GTTCTTATGTTGGAGGTTTTGGCTACCAGCAGCAGCCACTTTCCTACGGCTATCAACAAGGATTGGTATATCCTCCTTAT GGGTATACGACGTATGGACCTGAATACATCTACCCACAGTACCTTCAGATATATGGAGTGCCTGGGGCAGTGAACACTAC TGTTTATCCTTATGGACAATTGGGTCAGACTATTCCTAGTGGTCACGGTTATACAGCAATGCCAGGTTATACTGTACCAG CTCATCAGATTGTGCCGTACGGCGGATCCAGTGTTAATTCCATAACAACTTCACCTATGCCTGCCATTCAAGCATCATAT CCTAGTGGTATATATCAACATCCATCTTCGGTGGGCATTCTTTGA
Protein sequence (LotjaGi1g1v0569800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYQAIQGSSSGSSSGFQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRD PEAARRACADPAPVIDGRRANCNLASLGRPRPPLPYGRIRPASHYVGSLQPARGSYVGGFGYQQQPLSYGYQQGLVYPPY GYTTYGPEYIYPQYLQIYGVPGAVNTTVYPYGQLGQTIPSGHGYTAMPGYTVPAHQIVPYGGSSVNSITTSPMPAIQASY PSGIYQHPSSVGIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 245 | 245 | 6.8E-132 | – | |
| PANTHER | 1 | 245 | 245 | 6.8E-132 | ||
| Gene3D | 4 | 114 | 111 | 4.3E-25 | ||
| SUPERFAMILY | 8 | 118 | 111 | 6.11E-26 | ||
| CDD | 30 | 105 | 76 | 2.27862E-46 | – | |
| ProSiteProfiles | 30 | 107 | 78 | 16.756 | ||
| SMART | 31 | 103 | 73 | 1.2E-23 | ||
| Pfam | 32 | 88 | 57 | 4.8E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | MRNA binding | Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
Expression pattern of LotjaGi1g1v0569800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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