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GO:0003729

View this GO term in other databases

Overview

Field Value
Namespace Molecular function
Short description MRNA binding
Full defintion Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
Subterm of

Relationships

The relationship of GO:0003729 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
SO0000234
GOCpr

Associated Lotus transcripts 24

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj1g3v2838190.1
– Luc7-like protein [Medicago truncatula] gi|357507823|ref|XP_003624200.1|
GO terms
3
Lj1g3v2838190.2
– Luc7-like protein [Medicago truncatula] gi|357507823|ref|XP_003624200.1|
GO terms
3
Lj2g3v2089810.1
– PREDICTED: RNA-binding protein 8A-like [Glycine max] gi|356497345|ref|XP_003517521.1|
GO terms
1
Lj3g3v3640160.1
– PREDICTED: luc7-like protein 3-like isoform X1 [Cicer arietinum] gi|502146194|ref|XP_004506345.1|
GO terms
3
Lj5g3v2013890.1
– PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 5-like [Glycine max] gi|356535879|ref|XP_003536470.1|
GO terms
3
LotjaGi1g1v0143900.1
– RNA binding protein, putative; TAIR: AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1; TrEMBL-Plants: tr|A0A0B2QWF0|A0A0B2QWF0_GLYSO RNA-binding protein 38; Found in the gene: LotjaGi1g1v0143900
GO terms
1
LotjaGi1g1v0143900.2
– RNA binding protein, putative; TAIR: AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1; TrEMBL-Plants: tr|A0A0B2QWF0|A0A0B2QWF0_GLYSO RNA-binding protein 38; Found in the gene: LotjaGi1g1v0143900
GO terms
1
LotjaGi1g1v0295300.1
– RNA-binding family protein, putative; TAIR: AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q76LC6|RBM24_DANRE RNA-binding protein 24; TrEMBL-Plants: tr|C6T8L2|C6T8L2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0295300
GO terms
1
LotjaGi1g1v0295300.2
– RNA-binding family protein, putative; TAIR: AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q76LC6|RBM24_DANRE RNA-binding protein 24; TrEMBL-Plants: tr|C6T8L2|C6T8L2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0295300
GO terms
1
LotjaGi1g1v0363300.1
– RNA-binding family protein, putative; TAIR: AT4G26650.2 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|I1K893|I1K893_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0363300
GO terms
1
LotjaGi1g1v0487100.1
– LUC7-related protein; TAIR: AT3G03340.1 LUC7 related protein; Swiss-Prot: sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2; TrEMBL-Plants: tr|V7B1L9|V7B1L9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0487100
GO terms
3
LotjaGi1g1v0569800.1
– RNA binding protein, putative; TAIR: AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1; TrEMBL-Plants: tr|I1K789|I1K789_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0569800
GO terms
1
LotjaGi1g1v0569800.2
– RNA binding protein, putative; TAIR: AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1; TrEMBL-Plants: tr|A0A0B2QK00|A0A0B2QK00_GLYSO RNA-binding protein 24; Found in the gene: LotjaGi1g1v0569800
GO terms
1
LotjaGi1g1v0569800.3
– RNA binding protein, putative; TAIR: AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1; TrEMBL-Plants: tr|A0A0B2QK00|A0A0B2QK00_GLYSO RNA-binding protein 24; Found in the gene: LotjaGi1g1v0569800
GO terms
1
LotjaGi2g1v0443800.1
– RNA-binding family protein; TAIR: AT1G51510.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|B5DGI7|RBM8A_SALSA RNA-binding protein 8A; TrEMBL-Plants: tr|V7CI74|V7CI74_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0443800
GO terms
1
LotjaGi2g1v0443800.2
– RNA-binding family protein; TAIR: AT1G51510.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|B5DGI7|RBM8A_SALSA RNA-binding protein 8A; TrEMBL-Plants: tr|V7CI74|V7CI74_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0443800
GO terms
1
LotjaGi3g1v0402300.1
– RNA-binding family protein, putative; TAIR: AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1; TrEMBL-Plants: tr|V7APR5|V7APR5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0402300
GO terms
1
LotjaGi3g1v0544900.2
– LUC7; TAIR: AT5G51410.1 LUC7 N terminus domain-containing protein; Swiss-Prot: sp|Q3SX41|LC7L3_BOVIN Luc7-like protein 3; TrEMBL-Plants: tr|I3T676|I3T676_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0544900
GO terms
3
LotjaGi5g1v0301800.1
– Cleavage and polyadenylation specificity factor subunit 5; TAIR: AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit; Swiss-Prot: sp|Q8GXS3|CFIS2_ARATH Pre-mRNA cleavage factor Im 25 kDa subunit 2; TrEMBL-Plants: tr|A0A0L9VEN5|A0A0L9VEN5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0301800
GO terms
3
LotjaGi6g1v0228200_LC.1
– Cleavage and polyadenylation specificity factor subunit 5; TAIR: AT4G29820.1 homolog of CFIM-25; Swiss-Prot: sp|Q94AF0|CFIS1_ARATH Pre-mRNA cleavage factor Im 25 kDa subunit 1; TrEMBL-Plants: tr|I1L1L9|I1L1L9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228200_LC
GO terms
3
LotjaGi6g1v0351100.1
– Splicing factor 3B subunit 1; TAIR: AT5G64270.1 splicing factor; Swiss-Prot: sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1; TrEMBL-Plants: tr|V7BPY5|V7BPY5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351100
GO terms
2
LotjaGi6g1v0351100.2
– Splicing factor 3B subunit 1; TAIR: AT5G64270.1 splicing factor; Swiss-Prot: sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1; TrEMBL-Plants: tr|V7BPY5|V7BPY5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351100
GO terms
2
LotjaGi6g1v0351100.3
– Splicing factor 3B subunit 1; TAIR: AT5G64270.1 splicing factor; Swiss-Prot: sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1; TrEMBL-Plants: tr|V7BPY5|V7BPY5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351100
GO terms
2
LotjaGi6g1v0351100.4
– Splicing factor 3B subunit 1; TAIR: AT5G64270.1 splicing factor; Swiss-Prot: sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1; TrEMBL-Plants: tr|V7BPY5|V7BPY5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351100
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0003729
Molecular function MRNA binding 1 4.17