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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0583900 |
| Transcript ID | LotjaGi1g1v0583900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|A0A1J7HKS6|A0A1J7HKS6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0583900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112339568..112342009) extracted from Lotus japonicus Gifu genome v1.2.
AACTCATATATGTCTCATAACTCATACCACTCGAGCTATAATTCGTGAAAAAAAAACATTTATTTTATTTTACTTTTTAT CTCAATCTTCTTAATAAAATTGTAAAGAATATTATTGGAACAATAATTATTTAAGTAAAAAAACAATTAATACAAAATAA AACTACTAAAATGTCAAATATAATTGTAAGTTGTAACAATGATTCTCAAAAATTGATCTTGTCTGTATGAAGCAGAGTTA ATTTAATTTGAAATTTGAAACAGAAGCATACGCAATCACACGCAAAGAAGGAACCTAAATTTCTTCTCATGCGGGACCGG GAACCCAATCGACGACTGCTGGCGCTGCGACAAGCGGTGGTACCTCCGCCGAAAGCGACTAGCCAACTGCGCCATCGGAT TCGGCCGCAACTCCATCGGCGGCCGCGACGGAAGGTACTACGTCGTAACAAACCCCAACGACGACGACGCCGTCAACCCT AGACCCGGCACCCTCCGTTACGCCGTCATTCAAGACAAACCCTTATGGATCGTGTTCAAGAGAGACATGGTGATCACTCT CAAGCAAGAACTCATCATGAACAGCTTCAAGACCATCGATGGTCGCGGTGCCAATGTTCACATCGCGTTTGGAGCTTGCA TCACGATCCAGTTTGTCACGAATGTGATCATCCATGGTGTTCATATCCATGATTGTAAGCCGACTGGGAATGCCATGGTT CGAAGCTCTCCGTCGCATTATGGATGGAGGACAATGGCTGATGGTGATGGGATTTCGATCTTTGGGTCGAGTCATATTTG GATTGACCACAATTCGCTTTCTAATTGTGCTGATGGACTCGTTGATGCTATTATGGGGTCTACTGCGATTACCATTTCTA ACAACTTCTTCACTCGCCACAATGAGGTAAACCTTCTTCTCGATTTGCTTCTTCCCGATTTGATATGACCATAAGCGCTT AATTAAGCTGTTTTTCCAAATGTGACCTTAAGTAATACCAATTTTGATTTAAGTGTTGATTTTAATTGACTTCATAATTG TACAGGTGATACTGCTGGGTCACAGTGATACTTATGTGCGTGATAAGCAGATGCAAGTAACCATTGCATTCAACCATTTT GGGGAGGGTCTTATTCAAAGAATGCCAAGGTAAAACATCTTTAAAGCAACCAATGATTTTGATTTTCTTAGTCGGGTATA GGGGTGACAATATGGGTTGGCGGGGCAAGCCGGACAAAACCCGTCATTGGCCCGCCAAAATGCAGGTAGGTTGGGTTGGG CTAGCCCACTTTTAGTATTTGGGTTCAGAGTCTTAGCCCAACCCATATTTTGACGGACCAGCGGGTTGGAGGGATAGCCC ACTTAGAGAATGTAGTGAAATGAAAAAGGTTGTGTAATGACTCAGATATCAGTTTTATTGATTTTGGGGTCAAAACCTGG GTACTTATTTGATCTGACACTTTTTGTTTTCTTAGTCAGATATGTCTCATATGAATGAGCCTGTTTTTGTCCCTATATAG CTGAGCCTTGTTTTCGGCCGACATAAGCTGAACCTTTAACATTTAAGCTTTGAGCTGAGCCTTGTTTTCTCTTGGGCTAT GAATAACCCATTTAATAATTGGCAATGGGATATAAGAGATCAATAAAATGGAAGAAAATGAAAAAGTGGAGATCTCTTTA AAGCCCATATCTTTTTTGGAGCATATACCTGAGCCTCTTTTATTTGGACAAACATAGATGAGCCTTTAATCTTCTTGTTA GATGTTTTTTCTTGGGCTCTAAATAGTCCATTTATAATTTGCAATTGGGATATAAGAGATCAATTAAGTGGAAGAAAATG ATAAGTAGAGACCTCTTTAAGTGTCTTTGTCAAAACAAAATGCCCATTACTTCAGGATTCAGGAGTGACCTCTGTTGTGC ACTTGTGCTAAATGATATTATGGCTTTATATTCTCCATGTTGTTTTAACACAAAGATTGATTATTGATAATGCAGGTGTA GACATGGTTATTTCCACGTGGTAAACAATGACTATACCCACTGGGAAATGTATGCGATTGGAGGCAGTGCTAATCCAACA ATTAACAGCCAAGGCAACAGATACCTTGCCCCTGTGAACCCTTTTGCTAAGGAGGTAACATTTTTACTAGTTTTCCGCAT GTTGCTTATGAATATGATGGTGAACTTTTTGTTTAAAAATGGAAAACTCCATGTGGACAGGTGACAAAGAGAGTGGATAC AGGGGCAGGTGTATGGAGAGGTTGGAATTGGAGGTCACAGGGAGACCTTCTGCTGAATGGAGCCTTTTTCACTCCTTCAG GTGCAGGGGCTGCTGCAAGCTATGCTAGAGCTTCAAGTTTGTCTGCAAAATCATCTTCTTTAGTTGGTACCCTTACCTCT GGCTCTGGTGTTCTTAACTGCCGCAGGGGTGCCATGTGTTAA
CDS sequence (LotjaGi1g1v0583900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCATAACTCATACCACTCGAGCTATAATTCAAGCATACGCAATCACACGCAAAGAAGGAACCTAAATTTCTTCTC ATGCGGGACCGGGAACCCAATCGACGACTGCTGGCGCTGCGACAAGCGGTGGTACCTCCGCCGAAAGCGACTAGCCAACT GCGCCATCGGATTCGGCCGCAACTCCATCGGCGGCCGCGACGGAAGGTACTACGTCGTAACAAACCCCAACGACGACGAC GCCGTCAACCCTAGACCCGGCACCCTCCGTTACGCCGTCATTCAAGACAAACCCTTATGGATCGTGTTCAAGAGAGACAT GGTGATCACTCTCAAGCAAGAACTCATCATGAACAGCTTCAAGACCATCGATGGTCGCGGTGCCAATGTTCACATCGCGT TTGGAGCTTGCATCACGATCCAGTTTGTCACGAATGTGATCATCCATGGTGTTCATATCCATGATTGTAAGCCGACTGGG AATGCCATGGTTCGAAGCTCTCCGTCGCATTATGGATGGAGGACAATGGCTGATGGTGATGGGATTTCGATCTTTGGGTC GAGTCATATTTGGATTGACCACAATTCGCTTTCTAATTGTGCTGATGGACTCGTTGATGCTATTATGGGGTCTACTGCGA TTACCATTTCTAACAACTTCTTCACTCGCCACAATGAGGTGATACTGCTGGGTCACAGTGATACTTATGTGCGTGATAAG CAGATGCAAGTAACCATTGCATTCAACCATTTTGGGGAGGGTCTTATTCAAAGAATGCCAAGGTGTAGACATGGTTATTT CCACGTGGTAAACAATGACTATACCCACTGGGAAATGTATGCGATTGGAGGCAGTGCTAATCCAACAATTAACAGCCAAG GCAACAGATACCTTGCCCCTGTGAACCCTTTTGCTAAGGAGGTGACAAAGAGAGTGGATACAGGGGCAGGTGTATGGAGA GGTTGGAATTGGAGGTCACAGGGAGACCTTCTGCTGAATGGAGCCTTTTTCACTCCTTCAGGTGCAGGGGCTGCTGCAAG CTATGCTAGAGCTTCAAGTTTGTCTGCAAAATCATCTTCTTTAGTTGGTACCCTTACCTCTGGCTCTGGTGTTCTTAACT GCCGCAGGGGTGCCATGTGTTAA
Protein sequence (LotjaGi1g1v0583900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHNSYHSSYNSSIRNHTQRRNLNFFSCGTGNPIDDCWRCDKRWYLRRKRLANCAIGFGRNSIGGRDGRYYVVTNPNDDD AVNPRPGTLRYAVIQDKPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGACITIQFVTNVIIHGVHIHDCKPTG NAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITISNNFFTRHNEVILLGHSDTYVRDK QMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPVNPFAKEVTKRVDTGAGVWR GWNWRSQGDLLLNGAFFTPSGAGAAASYARASSLSAKSSSLVGTLTSGSGVLNCRRGAMC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 380 | 373 | 2.3E-249 | – | |
| PANTHER | 8 | 380 | 373 | 2.3E-249 | – | |
| Gene3D | 31 | 373 | 343 | 1.2E-120 | ||
| SUPERFAMILY | 32 | 371 | 340 | 2.2E-99 | ||
| PRINTS | 54 | 71 | 18 | 3.6E-85 | ||
| PRINTS | 78 | 103 | 26 | 3.6E-85 | ||
| SMART | 106 | 303 | 198 | 1.4E-101 | ||
| Pfam | 114 | 295 | 182 | 7.2E-20 | ||
| PRINTS | 114 | 130 | 17 | 3.6E-85 | ||
| PRINTS | 178 | 199 | 22 | 3.6E-85 | ||
| PRINTS | 258 | 277 | 20 | 3.6E-85 | ||
| PRINTS | 280 | 299 | 20 | 3.6E-85 | ||
| PRINTS | 322 | 346 | 25 | 3.6E-85 | ||
| PRINTS | 351 | 374 | 24 | 3.6E-85 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0583900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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