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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR018082
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 63 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.747s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0207779.1
n.a. PREDICTED: probable pectate lyase 16-like [Glycine max] gi|356532305|ref|XP_003534714.1| chr0 103899764 103900949 +
2 domain predictions
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Lj0g3v0293729.1
n.a. Pectate lyase [Medicago truncatula] gi|358348969|ref|XP_003638513.1| chr0 152547943 152551355 +
2 domain predictions
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Lj0g3v0306419.1
n.a. Nod-factor receptor 1a [Lotus japonicus] gi|37651058|emb|CAE02589.1| chr0 159887656 159890624 +
2 domain predictions
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Lj1g3v2952410.1
n.a. n.a. chr1 33467724 33473850 -
2 domain predictions
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Lj1g3v3476140.1
n.a. PREDICTED: probable pectate lyase 8-like [Cicer arietinum] gi|502174836|ref|XP_004515610.1| chr1 40355349 40361777 +
2 domain predictions
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Lj1g3v4616550.1
n.a. PREDICTED: probable pectate lyase 12-like [Cicer arietinum] gi|502111521|ref|XP_004494082.1| chr1 55176395 55179071 -
2 domain predictions
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Lj2g3v1828330.1
n.a. PREDICTED: probable pectate lyase 16-like [Glycine max] gi|356561259|ref|XP_003548900.1| chr2 27397426 27397857 -
2 domain predictions
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Lj4g3v0134630.1
n.a. PREDICTED: probable pectate lyase 16-like [Glycine max] gi|356564480|ref|XP_003550482.1| chr4 1444260 1446747 +
2 domain predictions
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Lj4g3v1389340.1
n.a. PREDICTED: probable pectate lyase 22 isoform 1 [Glycine max] gi|356563159|ref|XP_003549832.1| chr4 21719158 21721512 +
2 domain predictions
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Lj4g3v1614780.1
n.a. PREDICTED: probable pectate lyase P59-like [Cicer arietinum] gi|502152112|ref|XP_004508770.1| chr4 23786758 23788101 +
2 domain predictions
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Lj5g3v0615090.1
n.a. PREDICTED: probable pectate lyase 4-like [Glycine max] gi|356548168|ref|XP_003542475.1| chr5 7532608 7535245 -
2 domain predictions
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Lj5g3v0670070.1
n.a. PREDICTED: probable pectate lyase 12-like [Glycine max] gi|356546020|ref|XP_003541430.1| chr5 9523306 9527835 -
2 domain predictions
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Lj5g3v0670070.2
n.a. PREDICTED: probable pectate lyase 12-like [Glycine max] gi|356546020|ref|XP_003541430.1| chr5 9523306 9527835 -
2 domain predictions
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Lj5g3v2220310.1
n.a. PREDICTED: probable pectate lyase 12-like [Glycine max] gi|356575512|ref|XP_003555884.1| chr5 32006799 32013214 -
2 domain predictions
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Lj5g3v2288630.1
n.a. PREDICTED: probable pectate lyase 4-like [Glycine max] gi|356576853|ref|XP_003556544.1| chr5 33307850 33310677 -
2 domain predictions
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Lj6g3v0108680.1
n.a. PREDICTED: probable pectate lyase 15-like [Fragaria vesca subsp]. vesca] gi|470106762|ref|XP_004289729.1| chr6 1381470 1385872 -
2 domain predictions
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Lj6g3v0108680.2
n.a. pectate lyase [Fragaria x ananassa] gi|14531296|gb|AAK66161.1| chr6 1381470 1383294 -
2 domain predictions
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LotjaGi1g1v0230700.1
n.a. Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700 LjG1.1_chr1 54020768 54024469 -
2 domain predictions
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LotjaGi1g1v0230700.2
n.a. Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700 LjG1.1_chr1 54021544 54023821 -
2 domain predictions
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LotjaGi1g1v0230700.3
n.a. Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700 LjG1.1_chr1 54021546 54023609 -
2 domain predictions
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LotjaGi1g1v0230700.4
n.a. Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700 LjG1.1_chr1 54021546 54023803 -
2 domain predictions
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LotjaGi1g1v0230700.5
n.a. Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700 LjG1.1_chr1 54021546 54023804 -
2 domain predictions
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LotjaGi1g1v0230700.6
n.a. Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700 LjG1.1_chr1 54021546 54023807 -
2 domain predictions
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LotjaGi1g1v0230700.7
n.a. Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700 LjG1.1_chr1 54021546 54023912 -
2 domain predictions
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LotjaGi1g1v0498300.1
n.a. Pectate lyase; TAIR: AT1G14420.1 Pectate lyase family protein; Swiss-Prot: sp|P40973|PLY_LILLO Pectate lyase; TrEMBL-Plants: tr|I1N629|I1N629_SOYBN Pectate lyase; Found in the gene: LotjaGi1g1v0498300 LjG1.1_chr1 101443196 101446152 +
2 domain predictions
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LotjaGi1g1v0583900.1
n.a. Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|G7L2D3|G7L2D3_MEDTR Pectate lyase; Found in the gene: LotjaGi1g1v0583900 LjG1.1_chr1 112338867 112345597 -
2 domain predictions
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LotjaGi1g1v0583900.2
n.a. Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|A0A1J7HKS6|A0A1J7HKS6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0583900 LjG1.1_chr1 112339568 112342009 -
2 domain predictions
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LotjaGi1g1v0686400.1
n.a. Pectate lyase; TAIR: AT3G53190.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12; TrEMBL-Plants: tr|A0A072U2V5|A0A072U2V5_MEDTR Pectate lyase; Found in the gene: LotjaGi1g1v0686400 LjG1.1_chr1 125356951 125363072 -
2 domain predictions
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LotjaGi2g1v0079900.1
n.a. Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|A0A0L9VMG9|A0A0L9VMG9_PHAAN Pectate lyase; Found in the gene: LotjaGi2g1v0079900 LjG1.1_chr2 21339970 21346597 -
2 domain predictions
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LotjaGi2g1v0079900.2
n.a. Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|A0A0L9VMG9|A0A0L9VMG9_PHAAN Pectate lyase; Found in the gene: LotjaGi2g1v0079900 LjG1.1_chr2 21339974 21346597 -
2 domain predictions
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LotjaGi2g1v0079900.3
n.a. Pectate lyase; TAIR: AT3G27400.2 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P24396|PLY18_SOLLC Probable pectate lyase P18; TrEMBL-Plants: tr|V7C0A3|V7C0A3_PHAVU Pectate lyase; Found in the gene: LotjaGi2g1v0079900 LjG1.1_chr2 21343233 21345784 -
2 domain predictions
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LotjaGi2g1v0079900.4
n.a. Pectate lyase; TAIR: AT3G27400.2 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P24396|PLY18_SOLLC Probable pectate lyase P18; TrEMBL-Plants: tr|V7C0A3|V7C0A3_PHAVU Pectate lyase; Found in the gene: LotjaGi2g1v0079900 LjG1.1_chr2 21343233 21345951 -
2 domain predictions
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LotjaGi2g1v0079900.5
n.a. Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|A0A0L9VMG9|A0A0L9VMG9_PHAAN Pectate lyase; Found in the gene: LotjaGi2g1v0079900 LjG1.1_chr2 21343233 21346410 -
2 domain predictions
 –
LotjaGi2g1v0079900.6
n.a. Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|V7C0A3|V7C0A3_PHAVU Pectate lyase; Found in the gene: LotjaGi2g1v0079900 LjG1.1_chr2 21343233 21346413 -
2 domain predictions
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LotjaGi2g1v0079900.7
n.a. Pectate lyase; TAIR: AT3G27400.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11; TrEMBL-Plants: tr|V7C0A3|V7C0A3_PHAVU Pectate lyase; Found in the gene: LotjaGi2g1v0079900 LjG1.1_chr2 21343233 21346413 -
2 domain predictions
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LotjaGi2g1v0256700.1
n.a. Pectate lyase; TAIR: AT5G15110.1 Pectate lyase family protein; Swiss-Prot: sp|Q9M9S2|PLY3_ARATH Probable pectate lyase 3; TrEMBL-Plants: tr|I1N629|I1N629_SOYBN Pectate lyase; Found in the gene: LotjaGi2g1v0256700 LjG1.1_chr2 72294038 72297090 -
2 domain predictions
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LotjaGi2g1v0308100.1
n.a. Pectate lyase; TAIR: AT1G14420.1 Pectate lyase family protein; Swiss-Prot: sp|Q9M9S2|PLY3_ARATH Probable pectate lyase 3; TrEMBL-Plants: tr|I1JBP5|I1JBP5_SOYBN Pectate lyase; Found in the gene: LotjaGi2g1v0308100 LjG1.1_chr2 78244023 78247373 -
2 domain predictions
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LotjaGi2g1v0350000.1
n.a. Pectate lyase; TAIR: AT5G09280.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4; TrEMBL-Plants: tr|K7LNC8|K7LNC8_SOYBN Pectate lyase; Found in the gene: LotjaGi2g1v0350000 LjG1.1_chr2 82666423 82669008 -
2 domain predictions
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LotjaGi2g1v0394800_LC.1
n.a. Pectate lyase; TAIR: AT5G09280.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P18632|PLY1_CRYJA Pectate lyase 1; TrEMBL-Plants: tr|G7KAU8|G7KAU8_MEDTR Pectate lyase; Found in the gene: LotjaGi2g1v0394800_LC LjG1.1_chr2 89227577 89228130 +
2 domain predictions
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LotjaGi4g1v0012100.1
n.a. Pectate lyase; TAIR: AT1G11920.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|O65388|PLY2_ARATH Putative pectate lyase 2; TrEMBL-Plants: tr|I3T5F9|I3T5F9_LOTJA Pectate lyase; Found in the gene: LotjaGi4g1v0012100 LjG1.1_chr4 1503924 1506587 +
2 domain predictions
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LotjaGi4g1v0012100.2
n.a. Pectate lyase; TAIR: AT1G11920.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|O65388|PLY2_ARATH Putative pectate lyase 2; TrEMBL-Plants: tr|I3T5F9|I3T5F9_LOTJA Pectate lyase; Found in the gene: LotjaGi4g1v0012100 LjG1.1_chr4 1504008 1506227 +
2 domain predictions
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LotjaGi4g1v0225600.1
n.a. Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225600 LjG1.1_chr4 53141350 53143966 +
2 domain predictions
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LotjaGi4g1v0225600.2
n.a. Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225600 LjG1.1_chr4 53141700 53143615 +
2 domain predictions
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LotjaGi4g1v0225600.3
n.a. Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225600 LjG1.1_chr4 53141721 53143621 +
2 domain predictions
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LotjaGi4g1v0225600.4
n.a. Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225600 LjG1.1_chr4 53141730 53143615 +
2 domain predictions
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LotjaGi4g1v0246900.1
n.a. Pectate lyase; TAIR: AT3G01270.1 Pectate lyase family protein; Swiss-Prot: sp|P15722|PLY59_SOLLC Probable pectate lyase P59; TrEMBL-Plants: tr|A0A0B2PI51|A0A0B2PI51_GLYSO Pectate lyase; Found in the gene: LotjaGi4g1v0246900 LjG1.1_chr4 59827644 59832781 +
2 domain predictions
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LotjaGi5g1v0070900.1
n.a. Pectate lyase; TAIR: AT3G55140.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4; TrEMBL-Plants: tr|A0A151RCX5|A0A151RCX5_CAJCA Pectate lyase; Found in the gene: LotjaGi5g1v0070900 LjG1.1_chr5 11679420 11682353 -
2 domain predictions
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LotjaGi5g1v0083600.1
n.a. Pectate lyase; TAIR: AT3G53190.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12; TrEMBL-Plants: tr|A0A072VVN7|A0A072VVN7_MEDTR Pectate lyase; Found in the gene: LotjaGi5g1v0083600 LjG1.1_chr5 14061093 14067464 +
2 domain predictions
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LotjaGi5g1v0342500.1
n.a. Pectate lyase; TAIR: AT5G04310.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12; TrEMBL-Plants: tr|A0A0L9U0Z0|A0A0L9U0Z0_PHAAN Pectate lyase; Found in the gene: LotjaGi5g1v0342500 LjG1.1_chr5 65953593 65960004 -
2 domain predictions
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LotjaGi5g1v0342500.2
n.a. Pectate lyase; TAIR: AT5G04310.3 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12; TrEMBL-Plants: tr|A0A072VRH1|A0A072VRH1_MEDTR Pectate lyase; Found in the gene: LotjaGi5g1v0342500 LjG1.1_chr5 65958122 65959431 -
2 domain predictions
 –