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IPR002022

Source: InterPro

Description

IPR002022 is a Pectate lyase.

<p>Pectate lyase [ec:4.2.2.2] is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth [[cite:PUB00004536]].</p> <p>The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [[cite:PUB00007170], [cite:PUB00005163]]. PelC contains a parallel β-helix folding motif. The majority of the regular secondary structure is composed of parallel β-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of β-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 62

Transcript Name Description Predicted domains Domain count
Lj0g3v0081679.1
– PREDICTED: probable pectate lyase 8-like [Glycine max] gi|356540726|ref|XP_003538836.1|
Domains
9
Lj0g3v0207779.1
– PREDICTED: probable pectate lyase 16-like [Glycine max] gi|356532305|ref|XP_003534714.1|
Domains
19
Lj0g3v0293729.1
– Pectate lyase [Medicago truncatula] gi|358348969|ref|XP_003638513.1|
Domains
19
Lj0g3v0306419.1
– Nod-factor receptor 1a [Lotus japonicus] gi|37651058|emb|CAE02589.1|
Domains
11
Lj1g3v2952410.1
–
Domains
15
Lj1g3v3476140.1
– PREDICTED: probable pectate lyase 8-like [Cicer arietinum] gi|502174836|ref|XP_004515610.1|
Domains
17
Lj1g3v4616550.1
– PREDICTED: probable pectate lyase 12-like [Cicer arietinum] gi|502111521|ref|XP_004494082.1|
Domains
17
Lj4g3v0134630.1
– PREDICTED: probable pectate lyase 16-like [Glycine max] gi|356564480|ref|XP_003550482.1|
Domains
18
Lj4g3v1389340.1
– PREDICTED: probable pectate lyase 22 isoform 1 [Glycine max] gi|356563159|ref|XP_003549832.1|
Domains
18
Lj4g3v1614780.1
– PREDICTED: probable pectate lyase P59-like [Cicer arietinum] gi|502152112|ref|XP_004508770.1|
Domains
11
Lj5g3v0615090.1
– PREDICTED: probable pectate lyase 4-like [Glycine max] gi|356548168|ref|XP_003542475.1|
Domains
12
Lj5g3v0670070.2
– PREDICTED: probable pectate lyase 12-like [Glycine max] gi|356546020|ref|XP_003541430.1|
Domains
20
Lj5g3v2220310.1
– PREDICTED: probable pectate lyase 12-like [Glycine max] gi|356575512|ref|XP_003555884.1|
Domains
14
Lj5g3v2288630.1
– PREDICTED: probable pectate lyase 4-like [Glycine max] gi|356576853|ref|XP_003556544.1|
Domains
11
Lj6g3v0108680.1
– PREDICTED: probable pectate lyase 15-like [Fragaria vesca subsp]. vesca] gi|470106762|ref|XP_004289729.1|
Domains
11
Lj6g3v0108680.2
– Pectate lyase [Fragaria x ananassa] gi|14531296|gb|AAK66161.1|
Domains
11
LotjaGi1g1v0230700.1
– Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700
Domains
19
LotjaGi1g1v0230700.2
– Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700
Domains
11
LotjaGi1g1v0230700.3
– Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700
Domains
11
LotjaGi1g1v0230700.4
– Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700
Domains
11
LotjaGi1g1v0230700.5
– Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700
Domains
11
LotjaGi1g1v0230700.6
– Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700
Domains
11
LotjaGi1g1v0230700.7
– Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700
Domains
11
LotjaGi1g1v0498300.1
– Pectate lyase; TAIR: AT1G14420.1 Pectate lyase family protein; Swiss-Prot: sp|P40973|PLY_LILLO Pectate lyase; TrEMBL-Plants: tr|I1N629|I1N629_SOYBN Pectate lyase; Found in the gene: LotjaGi1g1v0498300
Domains
21
LotjaGi1g1v0583900.1
– Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|G7L2D3|G7L2D3_MEDTR Pectate lyase; Found in the gene: LotjaGi1g1v0583900
Domains
17
LotjaGi1g1v0583900.2
– Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|A0A1J7HKS6|A0A1J7HKS6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0583900
Domains
11
LotjaGi1g1v0686400.1
– Pectate lyase; TAIR: AT3G53190.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12; TrEMBL-Plants: tr|A0A072U2V5|A0A072U2V5_MEDTR Pectate lyase; Found in the gene: LotjaGi1g1v0686400
Domains
17
LotjaGi2g1v0079900.1
– Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|A0A0L9VMG9|A0A0L9VMG9_PHAAN Pectate lyase; Found in the gene: LotjaGi2g1v0079900
Domains
18
LotjaGi2g1v0079900.2
– Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|A0A0L9VMG9|A0A0L9VMG9_PHAAN Pectate lyase; Found in the gene: LotjaGi2g1v0079900
Domains
18
LotjaGi2g1v0079900.3
– Pectate lyase; TAIR: AT3G27400.2 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P24396|PLY18_SOLLC Probable pectate lyase P18; TrEMBL-Plants: tr|V7C0A3|V7C0A3_PHAVU Pectate lyase; Found in the gene: LotjaGi2g1v0079900
Domains
12
LotjaGi2g1v0079900.4
– Pectate lyase; TAIR: AT3G27400.2 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P24396|PLY18_SOLLC Probable pectate lyase P18; TrEMBL-Plants: tr|V7C0A3|V7C0A3_PHAVU Pectate lyase; Found in the gene: LotjaGi2g1v0079900
Domains
12
LotjaGi2g1v0079900.5
– Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|A0A0L9VMG9|A0A0L9VMG9_PHAAN Pectate lyase; Found in the gene: LotjaGi2g1v0079900
Domains
18
LotjaGi2g1v0079900.6
– Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|V7C0A3|V7C0A3_PHAVU Pectate lyase; Found in the gene: LotjaGi2g1v0079900
Domains
18
LotjaGi2g1v0079900.7
– Pectate lyase; TAIR: AT3G27400.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11; TrEMBL-Plants: tr|V7C0A3|V7C0A3_PHAVU Pectate lyase; Found in the gene: LotjaGi2g1v0079900
Domains
18
LotjaGi2g1v0256700.1
– Pectate lyase; TAIR: AT5G15110.1 Pectate lyase family protein; Swiss-Prot: sp|Q9M9S2|PLY3_ARATH Probable pectate lyase 3; TrEMBL-Plants: tr|I1N629|I1N629_SOYBN Pectate lyase; Found in the gene: LotjaGi2g1v0256700
Domains
20
LotjaGi2g1v0308100.1
– Pectate lyase; TAIR: AT1G14420.1 Pectate lyase family protein; Swiss-Prot: sp|Q9M9S2|PLY3_ARATH Probable pectate lyase 3; TrEMBL-Plants: tr|I1JBP5|I1JBP5_SOYBN Pectate lyase; Found in the gene: LotjaGi2g1v0308100
Domains
20
LotjaGi2g1v0350000.1
– Pectate lyase; TAIR: AT5G09280.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4; TrEMBL-Plants: tr|K7LNC8|K7LNC8_SOYBN Pectate lyase; Found in the gene: LotjaGi2g1v0350000
Domains
18
LotjaGi2g1v0394800_LC.1
– Pectate lyase; TAIR: AT5G09280.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P18632|PLY1_CRYJA Pectate lyase 1; TrEMBL-Plants: tr|G7KAU8|G7KAU8_MEDTR Pectate lyase; Found in the gene: LotjaGi2g1v0394800_LC
Domains
11
LotjaGi4g1v0012100.1
– Pectate lyase; TAIR: AT1G11920.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|O65388|PLY2_ARATH Putative pectate lyase 2; TrEMBL-Plants: tr|I3T5F9|I3T5F9_LOTJA Pectate lyase; Found in the gene: LotjaGi4g1v0012100
Domains
18
LotjaGi4g1v0012100.2
– Pectate lyase; TAIR: AT1G11920.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|O65388|PLY2_ARATH Putative pectate lyase 2; TrEMBL-Plants: tr|I3T5F9|I3T5F9_LOTJA Pectate lyase; Found in the gene: LotjaGi4g1v0012100
Domains
18
LotjaGi4g1v0225600.1
– Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225600
Domains
18
LotjaGi4g1v0225600.2
– Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225600
Domains
11
LotjaGi4g1v0225600.3
– Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225600
Domains
11
LotjaGi4g1v0225600.4
– Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225600
Domains
11
LotjaGi4g1v0246900.1
– Pectate lyase; TAIR: AT3G01270.1 Pectate lyase family protein; Swiss-Prot: sp|P15722|PLY59_SOLLC Probable pectate lyase P59; TrEMBL-Plants: tr|A0A0B2PI51|A0A0B2PI51_GLYSO Pectate lyase; Found in the gene: LotjaGi4g1v0246900
Domains
19
LotjaGi5g1v0070900.1
– Pectate lyase; TAIR: AT3G55140.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4; TrEMBL-Plants: tr|A0A151RCX5|A0A151RCX5_CAJCA Pectate lyase; Found in the gene: LotjaGi5g1v0070900
Domains
12
LotjaGi5g1v0083600.1
– Pectate lyase; TAIR: AT3G53190.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12; TrEMBL-Plants: tr|A0A072VVN7|A0A072VVN7_MEDTR Pectate lyase; Found in the gene: LotjaGi5g1v0083600
Domains
20
LotjaGi5g1v0342500.1
– Pectate lyase; TAIR: AT5G04310.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12; TrEMBL-Plants: tr|A0A0L9U0Z0|A0A0L9U0Z0_PHAAN Pectate lyase; Found in the gene: LotjaGi5g1v0342500
Domains
20
LotjaGi5g1v0342500.2
– Pectate lyase; TAIR: AT5G04310.3 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12; TrEMBL-Plants: tr|A0A072VRH1|A0A072VRH1_MEDTR Pectate lyase; Found in the gene: LotjaGi5g1v0342500
Domains
18
LotjaGi5g1v0358500.1
– Pectate lyase; TAIR: AT3G55140.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4; TrEMBL-Plants: tr|I3T7N6|I3T7N6_LOTJA Pectate lyase; Found in the gene: LotjaGi5g1v0358500
Domains
11
LotjaGi5g1v0358500.2
– Pectate lyase; TAIR: AT3G55140.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4; TrEMBL-Plants: tr|I3T7N6|I3T7N6_LOTJA Pectate lyase; Found in the gene: LotjaGi5g1v0358500
Domains
11
LotjaGi6g1v0014200.1
– Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|A0A0R0E8X8|A0A0R0E8X8_SOYBN Pectate lyase; Found in the gene: LotjaGi6g1v0014200
Domains
14
LotjaGi6g1v0014200.2
– Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|Q94FT5|Q94FT5_FRAAN Pectate lyase; Found in the gene: LotjaGi6g1v0014200
Domains
11
LotjaGi6g1v0014200.3
– Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|A0A151S7N4|A0A151S7N4_CAJCA Pectate lyase; Found in the gene: LotjaGi6g1v0014200
Domains
11
LotjaGi6g1v0014200.4
– Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|A0A151S7N4|A0A151S7N4_CAJCA Pectate lyase; Found in the gene: LotjaGi6g1v0014200
Domains
11
LotjaGi6g1v0014200.5
– Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|I1LAJ4|I1LAJ4_SOYBN Pectate lyase; Found in the gene: LotjaGi6g1v0014200
Domains
11
LotjaGi6g1v0096900.1
– Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|H2DL22|H2DL22_LOTJA Pectate lyase; Found in the gene: LotjaGi6g1v0096900
Domains
18
LotjaGi6g1v0096900.2
– Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|H2DL22|H2DL22_LOTJA Pectate lyase; Found in the gene: LotjaGi6g1v0096900
Domains
11
LotjaGi6g1v0097000.1
– Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|A0A1J6IJH4|A0A1J6IJH4_NICAT Putative pectate lyase 5; Found in the gene: LotjaGi6g1v0097000
Domains
17
LotjaGi6g1v0097000.2
– Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|A0A1J6IJH4|A0A1J6IJH4_NICAT Putative pectate lyase 5; Found in the gene: LotjaGi6g1v0097000
Domains
17
LotjaGi6g1v0097000.3
– Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|D3IZZ2|D3IZZ2_GOSRA Pectate lyase; Found in the gene: LotjaGi6g1v0097000
Domains
16
LotjaGi6g1v0292100.1
– Pectate lyase; TAIR: AT4G22080.1 root hair specific 14; Swiss-Prot: sp|O65456|PLY16_ARATH Probable pectate lyase 16; TrEMBL-Plants: tr|A0A0B2S814|A0A0B2S814_GLYSO Pectate lyase; Found in the gene: LotjaGi6g1v0292100
Domains
18

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SignalP-noTM SignalP_GRAM_NEGATIVE 1 1.61