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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0638400 |
| Transcript ID | LotjaGi1g1v0638400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane and coiled-coil domains protein 1; TAIR: AT5G06660.1 transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane); Swiss-Prot: sp|Q3T0N3|TMCO1_BOVIN Calcium load-activated calcium channel; TrEMBL-Plants: tr|I3S180|I3S180_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0638400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119493110..119496273) extracted from Lotus japonicus Gifu genome v1.2.
AAACGAATCAGAACTAGTTATCACCTCACCCTCGATCGCGTCCTGATTCTCCCTTTGTTCGCATCGTTTTCCCTTCCGAT TTCTCCAGGTGCTTACCTTTCTCAGATCTACGATCGAACACCATATTTTTAATCCGTGTTTTCATCTCATTTTCCTTGAT TTTATCTATGGCAGAGCGATTCGTATCTTGCACGGGACCAGTGGATTCAGATCAAGGGCTGTTCCGGTTGATTTGATTGA TATTCAAGGTTTGAAACATTGAATTTTTTCTTAGCATTTTAGGATTTCTTACTGCTCCATTGCTAATTGAAATTATAGTA TGTTATGCTTGATTTATGTCAAAGGGGAATCAGTTAGCTATTTTTGTGATTACTTTAATCAAGGAGAGTTGGATGTTTGG GTGATAATGGGAATAGGAATTTGATGCCTAATTGGTTAGAAGACAATCCAACCCTTTTACCCAACATGATCAATCAATCA CACACATATTTTAAGAGTAATTTCCTCAGAGAGGCCTTTTCATTGGTGCACATTAACATGCTGGTGAGCTTATTGAGAAA CAGATCTATCTGTACTGTAGAACAGCCTTGTAAAATTAGGAGACGAAAGGTAGTTGCGGCGGGAATGATCGAAAAACATT CCTTTTACAGCAGTTCCCATTTTCCTAACCATTAATTGAGTATGTTGACAAACCAAATGAAGCTACTAATTAATGAATTT TGCTGTAACTTCTGTCGCAACCTATGAAGCATGAGTCATTTTGGCTGCTGTACACGTATTTAGTATGGATGCTTGGATAC TAAATTCGTGTTTCTTTTCTTGCTTATTGCACATTTTTCAGTTCTCTTGTGTGTTTCATTAGTTTTTTTAGAACAATGTG TGTGTGTGTATTTATTATGAAGATGCTTTGCTGACTTTTTCAAAATAAAATTTCCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTATATATATATATATATATATATAAGTGCTCCCTTACCTTAGTGTTTTTATAAAATCCAGTACCTCATGCTCATA TCTGTGCAACATAAGTCACAATCCAGTACAAGATTCTGCAATTCGATAATAAATGTTAAATAATAGCAACAAAATAGATG CTGTTTTTCTGCCCGGTCATGATGTGATATGCCTGCTCTTCAATATGCCATGTTAATACTGCAAGGGTTAATTGGTTTCC ATTAAGTAGGGTCAAAGGTTCACTAATGTTGGTGGGGTGAAATTTTCTGGAGGAAGGGGCTTAGGACAGTATTTTCTGGG GTTTGCATATTTCATGTGTATGCGTGACTTATGAGAATGTTCAGCTAGTATTGTCGAATTTAAATTATTAGCGGGAAAAA TACGTGAGGATGCGACAATCACTGACTTGTTGACTGTTACTCTGATGCTAATAATATATTTGGTAATCAGAAAGACACAG TTCCTAAAATTTTGAACTGTTAAGTCACGTGTTCATATGGAATATATGCTTTAATTTATTGGTATATTATTGAAAAAGTT AGTCCTGGCTCCTGAGTAAGTAATTCTGCTAGTTTGGTAGGTGCTGTGGGTATATTACTGTTCCTAGCTATGCTAAGTTC CATAACACATGTTGTTATCGCCTAAGAAAGTATCATAGAGAAGTTATACTGCAAAACCTGGAAGTTGATTATTTATAGCT ATATTTTATGAACAGATTAATAAGATAATAAACAGGTGGTGAATTGGATTCTGGTTACAATAAATAATTCTTGGGCTGTT TTGTATTATATCATATAATGATAGCTGCTGCTATGTCCTTGCGATTTGCATCATGTTTCTATTTTCTGAATTTGCAGGCG TTATATTTAAACCTAAGACTTGAAGGGAAACTGCCGTTCTTGGCCCGGTAAAAATCCAACTATTTTGTAGTAAAACACTG AAGTTTTTATCTTGATTAGGGAATCAATTCAATGTGTCATCTTAGAAAACTCATTCTTGAAACTTGGTTTTCTTATAACC AAATTGGTTTGAGGATTTTATGCTTGACAGCATAACAGTAAGGACAAGTCCCAATTTTCTGTTTGTTCTTTTTGCAAACA ACACATTCTTTTGCTGTGATATGTGCATTTTTTCAAACATAAAATCGAGGAATGAGGATCCAATAAGAGCAACTACGTAT GGATTATAGCCCTCTAACTCTACTTTCAAGGAATTTTATTCCTCTTAAGGATTTTTGTTTGTTTTTAGGATTTTTGTTTT TGTGCACACAAATTTTTCTGCTATTCTAAGAATATATGATTCATTTTTTATATTTTTTTGTATTTACAGGCAGTTTAAAC AATTTGATCCAGATTCAAGTTTGCTTACTCTTTTTCTCGTAGATTTTTCTATACTTCCCATGGCATATCCCTTCTCAGAT TTCAAGTACTCAGATGGCCTCACTGTGGTGGGTATATCCTTTTGCACAGCTATTGTTTGTGAGGCCATCTCATGGGTTCT TATCTACCGTACCAATTCGTACAAGAACCTTCGGTCCTCCATAGACAAAGCCTCTAAGAAACTTGAGACAATGAAGACAG ACAGCCAGAAAATTAACATTAAGAAGTCGAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCAAGTCGT GACTTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTAGCTCTGGTTCTCTTTGTGGTTTTTGGGCTGCTGAATTCACT CTTTGAAGGAAAGGTAGTTGCTAAATTGCCCTTCAAGCCTTTTGGTCTTGTTATGAAGATGAGTCATCGAGGGTTGCAAG GTACTGATCCCACTGATTGTTCCATGGCATTTCTATACTTCTTGTGTTCCATTAGTATCAGAACAAATTTGCAGAAGTTC TTAGGTTTTGCACCGCCAAGGGGTGCAAGTGCTGGCCTCTTCCCCATGCCAGACCCGAAGACCAGTTGATTGGATTTAGT GTTATATTTGAGCTGTTTACTTGTTATTTCTAGGTTTAAGATAATTTTGAGCTGCATAACCTTAATCAACTTCAGTTATT TGATTTGGTTTGGTTCCCTTAAGGATGATTTAATCAGGTATTAACTTCAGTTTTTCAATTGTGATTTGCTTGTTTTTTTT CCTTCTTAAGTCCAATAAAGAGCCCTTATCTATGTTATTGTGGA
CDS sequence (LotjaGi1g1v0638400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATATCCCTTCTCAGATTTCAAGTACTCAGATGGCCTCACTGTGGTGGGTATATCCTTTTGCACAGCTATTGTTTG TGAGGCCATCTCATGGGTTCTTATCTACCGTACCAATTCGTACAAGAACCTTCGGTCCTCCATAGACAAAGCCTCTAAGA AACTTGAGACAATGAAGACAGACAGCCAGAAAATTAACATTAAGAAGTCGAAGACCAAAAAAATTGACCGTGTTGAGACA AGCCTCAAAGAATCAAGTCGTGACTTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTAGCTCTGGTTCTCTTTGTGGT TTTTGGGCTGCTGAATTCACTCTTTGAAGGAAAGGTAGTTGCTAAATTGCCCTTCAAGCCTTTTGGTCTTGTTATGAAGA TGAGTCATCGAGGGTTGCAAGGTACTGATCCCACTGATTGTTCCATGGCATTTCTATACTTCTTGTGTTCCATTAGTATC AGAACAAATTTGCAGAAGTTCTTAGGTTTTGCACCGCCAAGGGGTGCAAGTGCTGGCCTCTTCCCCATGCCAGACCCGAA GACCAGTTGA
Protein sequence (LotjaGi1g1v0638400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYPFSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSQKINIKKSKTKKIDRVET SLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLQGTDPTDCSMAFLYFLCSISI RTNLQKFLGFAPPRGASAGLFPMPDPKTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | - | – | |
| PIRSF | 3 | 189 | 187 | 3.4E-75 | ||
| PANTHER | 8 | 188 | 181 | 6.8E-72 | ||
| SMART | 12 | 172 | 161 | 1.7E-37 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 14 | 36 | 23 | - | – | |
| Pfam | 14 | 171 | 158 | 8.8E-31 | ||
| Phobius | 37 | 96 | 60 | - | – | |
| Coils | 41 | 61 | 21 | - | – | |
| TMHMM | 96 | 115 | 20 | - | – | |
| Phobius | 97 | 115 | 19 | - | – | |
| Phobius | 116 | 189 | 74 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium channel activity | Enables the facilitated diffusion of a calcium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of endoplasmic reticulum membrane | The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Endoplasmic reticulum calcium ion homeostasis | Any process involved in the maintenance of an internal steady state of calcium ions within the endoplasmic reticulum of a cell or between the endoplasmic reticulum and its surroundings. |
Expression pattern of LotjaGi1g1v0638400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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