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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002809
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 8 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.292s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0284669.1
n.a. Transmembrane and coiled-coil domain-containing protein [Medicago truncatula] gi|357508575|ref|XP_003624576.1| chr0 147716627 147719881 +
3 domain predictions
1 GO term
Lj5g3v1326710.1
n.a. PREDICTED: transmembrane protein 111-like [Glycine max] gi|356566401|ref|XP_003551420.1| chr5 20473071 20478080 -
3 domain predictions
1 GO term
Lj5g3v1327760.1
n.a. PREDICTED: transmembrane protein 111-like [Glycine max] gi|356566401|ref|XP_003551420.1| chr5 20490947 20495718 +
3 domain predictions
1 GO term
LotjaGi1g1v0638400.1
n.a. Transmembrane and coiled-coil domains protein 1; TAIR: AT5G06660.1 transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane); Swiss-Prot: sp|Q3T0N3|TMCO1_BOVIN Calcium load-activated calcium channel; TrEMBL-Plants: tr|I3S180|I3S180_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0638400 LjG1.1_chr1 119492730 119496325 -
3 domain predictions
1 GO term
LotjaGi1g1v0638400.2
n.a. Transmembrane and coiled-coil domains protein 1; TAIR: AT5G06660.1 transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane); Swiss-Prot: sp|Q3T0N3|TMCO1_BOVIN Calcium load-activated calcium channel; TrEMBL-Plants: tr|I3S180|I3S180_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0638400 LjG1.1_chr1 119493110 119496273 -
3 domain predictions
1 GO term
LotjaGi1g1v0638400.3
n.a. Transmembrane and coiled-coil domains protein 1; TAIR: AT5G06660.1 transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane); Swiss-Prot: sp|Q3T0N3|TMCO1_BOVIN Calcium load-activated calcium channel; TrEMBL-Plants: tr|I3S180|I3S180_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0638400 LjG1.1_chr1 119493325 119493900 -
3 domain predictions
1 GO term
LotjaGi5g1v0207000.1
n.a. ER membrane protein complex subunit 3; TAIR: AT4G12590.1 ER membrane protein complex subunit-like protein (Protein of unknown function DUF106, transmembrane); Swiss-Prot: sp|Q7SXW4|EMC3_DANRE ER membrane protein complex subunit 3; TrEMBL-Plants: tr|I3S7X8|I3S7X8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0207000 LjG1.1_chr5 50900873 50906223 +
3 domain predictions
1 GO term
LotjaGi5g1v0207000.2
n.a. ER membrane protein complex subunit 3; TAIR: AT4G12590.1 ER membrane protein complex subunit-like protein (Protein of unknown function DUF106, transmembrane); Swiss-Prot: sp|Q7SXW4|EMC3_DANRE ER membrane protein complex subunit 3; TrEMBL-Plants: tr|I3S7X8|I3S7X8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0207000 LjG1.1_chr5 50901248 50905828 +
3 domain predictions
1 GO term