Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0663800 |
Transcript ID | LotjaGi1g1v0663800.8 |
Related isoforms 7 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|I3T9L1|I3T9L1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0663800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122538260..122543247) extracted from Lotus japonicus Gifu genome v1.2.
TTGATCCTTCTGTTGCGGACTGTCACCGTTTCTTTTAACTCTTAAAAGTTGAGAGTGCACAACCTTCTGAAAGCTTTTCT TAATTGGCGACTTAAAAAGATTGCTGTGACTTTTTGTGTTCAAATCATCTCATGGATTTGTTGTTATATCTCGAGTAGCC AAGTTAGACTTTTCTTTAGCTTGAATAGGTGGATTTCACCAGTGTCGTCATAGCTCTCTGATCCTCCAGTGGATAATTTG GATATGCTTTTAATAACTCTTTTTTTACATGTTCTCATGCTTTTGGTGTTCAGGGGCATTGAAGCAACTAATGTTCATCC TTCTCGAATTTCTGAATTTGGAGCCCTCGAACAATCTCTTGGATTTCGTATTGAAGATACCATGAATCTTAGCAGAAGTA TGTTGCTCACTGTTTGATCTCTAACAGTTGGACTACCTTTTTTATGTCGTACTTCTTGTTACTGTGAAGTGTGGGCTGCT GTTTTATGAATTTAAGATCTTGTCTCGCATTCTCGTTGCTTATGTTGTTGTGCTTGCCAATGCTTTTTATTCAAAAGTGA ATCATATCCTTTCCAATTACATTTGTTTGTAACTTGCTGCTAAAGTAGGCCTTCCATTCTATTTCTACTTCTCGGGGCTA AATTTTTTATTGCTATGAATGATGCTAAAATGTTTGTACCTCAAGGAAATCTTGGTTTTCTTGATTTTTCTTGTGGATCT TTGTCTTTCTGAGCATTACTTTGTGAATTCACCATGGCTTACTGTGTCTGATGTTGTATAATTTATATTTAAAATCTAAT GAATCATATCTTCTCCAATGGTTTTCACTTGTTCCTAATCTGTTATTAACATGAGCCTTCATCAGATTTCTACCTACACT GTTCTAGAAGAAATTTGTGTTTCCTCAAGTGTGATCCTTCAAAAGCAATCAGAAGATATAGGATTATTGTTGGAATAAAA TAACTAGATGTTAAACCAAAAACTGTTTCATTAACCTCACAGAAAACTCATTAAAAAGTAACTGAACAATGATAGAAATA CATAGTATTAGAATAGTCGCCCCCCTCTTGTTGGCACTTAATCTAACCACCATGACCCTTTTATTTGTATATTATGTTTC AGATCCTGTGTTCAATCAAATGAAATCAAATAGCCAGGCTCTTGGTGCTGATATTCAGTTCGGTGCTTTGAGCAAGGTAA AATTATATCTTCTTTATGCGGTTATGTGCTTTCAATAATCAATTAACTGCAATATGATGAAGTCCTGGATTTCTCTTGCA TGTAAGATACAGTCAATTGCAACCTCGGATAATAACCTCTCTGCTGCAATTGCGGGGTCTCAGATGATGCCATTACAGAA AGACTCGCAACCAAATCTGGCTTCAACATCTGGAGGTCATCGCGAAAACTGGGGCGAGTCCAACACGGGTGATGCGAGCC CTACATCAACAGATGATACAGATGATAAAAATCAAATGGTGATTATTTTACTTTAATTATACAGTTTATTCAGCATCTGT AATTCAATCTATTCATCGATTGAAATCAAATGCCTATTGGTGATGCCCCCTGGAGTTATGATGTGATATTGGGGATAATT TTTCCTTCTAATTGTTCATTGTTATCAAACTTTTAAGAGCATGTTATTCATACTTTAAAAATGGTTCTTCATTGTTATTT TGCAGGTTGAAAGGGGTGAATCCAGTGATAGATCAAAAGATAAAACAGATCAAAAGGTTATATAAAGTAATCATATTCAC ATAACATAAGCTTTTGGTACTATATGTTAAATTTTTGTGTTCCATTCAGACATTAAGACGGCTGGCTCAAAATCGTGAAG CTGCTAGAAAAAGCCGACTGAGGAAAAAGGTAGGGCCTTTTGTTAATTGTAAATGAACTTGTAAACTTATTCCTTCTGTT GTAGCTTTGTTAGTTGTTAAATGTAGCATTGCTACATTGTTGACAAATGACAACTTTAAATATTTTGCATGCTTTGATTT CTTATTCTTTAAACCCTAATTTCTTTTCATTCAGGCATATGTGCAACAGTTAGAGAGTAGTAGGTTGAAACTTACATTGT TGACAAATGACAACTTTAAATATTTTGCATGCTTTGATTTCTTATTCTTTAAACCCTTATTTCTTTTCATTCAGGCATAT GTGCAACAGTTAGAGAGTAGTAGGTTGAAACTTACACAACTGGAGCAAGAGCTCCAGCGAGCTCGCCAGCAGGTTTGGTT GTGTTAATTTATTCATTTTATCCATTCAAAGTTTTGTTCTCATCCTTTTGAAACCCTTTTTTTCGTTAGCTTACATTAAT CTAGTTATGTTACTACAGCCTCTGTGACAATTTGGTTATTAATCTTTTTCCAGGGAATATTTATTTCAAGCACCGGAGAG CAGGCCCATTCAATGAGTGGAAATGGTATTAATCTTCTTTTACCTCTAATCGTATGCCTCAAGCTTGAAAATGTTTATTG CATTGAAATCCTTTCTACTTAAGCACTTATTGTACATGATAGAATATGGTTTTACTTGATGTGATTCGGACAGCATCATG TGTATGTGCATAAGTGCAAGCCTGTTATATGATTTTAAACTCTTACAACATAGCACCACATGGTGGTCATTGGCTGGGAT TTTCCGTATGTTTCTGTTATGTTTCAGATCATTAATCCATTGATTAATCATCTTGGTATGCAGGTGCTATAGCATTTGAT GTTGAATATGCGCGATGGTTAGAAGAACATAATAGGCATACCAATGAGCTAAGGGCTGCTATCAATTCTCATGCTGGAGA CATTGAACTTCGTACCATTGTTGACAATTTCATGACACAATTTGACGATCTCTTCAGGCTGAAAGGTATCGCTGCAAAAG CTGATGTTTTTCACATCCTGTCTGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCT TCAGAAATTCTCAAGGTGAGAATTTTTTTGTTTATTTATGCTTTATGGTTAGATATGATTTTTTCCTGGTCAACAATGTG CTGAAGTACAAGTGTGGCAATCAATTTATTATGATTTCTCAAAAACATTTTGTGCTTGTGTTCTGTTCATCCAGTGTGTG TATGGAAGTTCCGTAGCAATCTCTGTAAGAACAGTCTGCTTTACCTTTTGCTAATGTTTAACTAATTAATTATCTTTAAA AGGTTTGGGGAATGGTCAATCATATGAAGCTGTTTTTCATGCATCTCTCAAGCATGTGATTCATTTCCGGTGTACATACT TCTGTGTAAACGTGCTTTTAGTTCACAATAAAACTGACATGTGTTGTTATTGTATGGTACTGAATGATGAAATTGGATCA CTTGATGTGCTAGAGGAGGAATAATATATATTGTAATGCTAACAATAAACATTTTTTTTGTGCGCTGTTTTATGAACTGT GAGAGTTTGAAGACGATGGTTGAAAATAGCTAGGTGGTTGTATGAGAAGACATTTTCCTTGTTCATTTTTCATCTTGCCC TAGATCTTTGATAGATAAAGAGGTATTATAAATCTATCTTTGTGCCGATATGCTTTTTTCTCTATTTTATGGGATGGGGG GGGGGGGATTCCAACAAGTCCAATGGAAATTAACTAAGACAATGGTTCAGACCTTTTGAATGTTCTTCAGAAGTTTTAAT TCCATAATCATTCAATCGAAATGTGGAAACAATTTTAACGGGGACTGTTTTCCCCATCCTTCTAGTTTGGTTTGAAAATT ACTTCCCTAGTATTGAACACCCACCACATCCTCCGCACTATGAATATATATGATATATAAAGTGAGGGAAAAGCCCAGGG GATTCTAAATATACAGCAATTCAGCCCCTATGTTCTTGAAGTTGTTGAAAAAAAAAATCCAAGATATTCTTGAGGAACCT TATCTTGATACCAAGTTATTCAGGTTTTGAATTATCAAGTTCATTCCCTTTTGTCATGTGATGCCATCTAAAACTGGGTT GACACTATTTCAGCTTCTTGTAAATCAATTGGAGCCTTTAACTGAGCAACAATTGATGGGCATCTACAACTTGCAACAGT CATCCCAACAGGCCGAAGATGCTCTATCCCAAGGAATGGATGCATTGCAGCAATCACTATCTGAGACCTTGGCTAATGGT TCACCCAACCCATCAGGCTCTTCAGGAAATGTGGCCAACTACATGGGGCAAATGGCTATGGCGATGGGAAAGCTAGGTAC CCTCGCTGGATTTCTTCGCCAGGTAAACTAGCTGATTGTATCTGCATCTGTTTCCAATTTCTCAAACTTAAATCTTTTTG AAATGATGAGAAATCAGGAGTTTAGAACTGAATTTTAGATGGACATAGAAATAGAACCAAGTGTTTTTTTGTTTCTCAGT TATTTTTAAGTAAAAGAAGTTTTTACTTTTTATTCCATTTGGAAAAAAAGATCTATTCATTTTGTATAAAGTCGGATGCA AACTATTCTAGATATAGGCCACGTTTGGAAGAGTTTATTCGAGTTTATCTTATAGTAAATGTTTTGGAGAACATATATAA AATATAAATAGCTTATGACCTATCGTTAAACTGTTTTAAGCTTATTTTCATAAGCTACTAAGTTGAGCTTATGAATAAGT GCTTATATATGCACCTATAACATATTTTGAGCTTATTTCAATAAGCTTCTCAAATTAGCTTATGAATAAATGCTTACTCA ATAAGTGCTTAATTAAGTTGTTTACCCAAAAATGCACCTTAGTACAAATGTGATTGATTGATTCATCAGAAATGAAAGCA GTAGTTACAATATTTGTCGATTCACTTTTTCATGTTACTAGGCTGATAATCTGCGGCAGCAAACATTGCAACAAATGCTT AGGATATTAACAACTAGACAATCCGCTCGAGCCCTTCTCGCAATAAGTGATTATTTCTCCCGGCTGCGAGCCCTGAGTTC TCTCTGGCTGGCCAGGCCACGGGAGTGA
CDS sequence (LotjaGi1g1v0663800.8) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCTTAGCAGAAATCCTGTGTTCAATCAAATGAAATCAAATAGCCAGGCTCTTGGTGCTGATATTCAGTTCGGTGC TTTGAGCAAGATGATGCCATTACAGAAAGACTCGCAACCAAATCTGGCTTCAACATCTGGAGGTCATCGCGAAAACTGGG GCGAGTCCAACACGGGTGATGCGAGCCCTACATCAACAGATGATACAGATGATAAAAATCAAATGGTTGAAAGGGGTGAA TCCAGTGATAGATCAAAAGATAAAACAGATCAAAAGACATTAAGACGGCTGGCTCAAAATCGTGAAGCTGCTAGAAAAAG CCGACTGAGGAAAAAGGCATATGTGCAACAGTTAGAGAGTAGTAGGTTGAAACTTACACAACTGGAGCAAGAGCTCCAGC GAGCTCGCCAGCAGGGAATATTTATTTCAAGCACCGGAGAGCAGGCCCATTCAATGAGTGGAAATGGTGCTATAGCATTT GATGTTGAATATGCGCGATGGTTAGAAGAACATAATAGGCATACCAATGAGCTAAGGGCTGCTATCAATTCTCATGCTGG AGACATTGAACTTCGTACCATTGTTGACAATTTCATGACACAATTTGACGATCTCTTCAGGCTGAAAGGTATCGCTGCAA AAGCTGATGTTTTTCACATCCTGTCTGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGC TCTTCAGAAATTCTCAAGCTTCTTGTAAATCAATTGGAGCCTTTAACTGAGCAACAATTGATGGGCATCTACAACTTGCA ACAGTCATCCCAACAGGCCGAAGATGCTCTATCCCAAGGAATGGATGCATTGCAGCAATCACTATCTGAGACCTTGGCTA ATGGTTCACCCAACCCATCAGGCTCTTCAGGAAATGTGGCCAACTACATGGGGCAAATGGCTATGGCGATGGGAAAGCTA GGTACCCTCGCTGGATTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACATTGCAACAAATGCTTAGGATATTAACAAC TAGACAATCCGCTCGAGCCCTTCTCGCAATAAGTGATTATTTCTCCCGGCTGCGAGCCCTGAGTTCTCTCTGGCTGGCCA GGCCACGGGAGTGA
Protein sequence (LotjaGi1g1v0663800.8) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLSRNPVFNQMKSNSQALGADIQFGALSKMMPLQKDSQPNLASTSGGHRENWGESNTGDASPTSTDDTDDKNQMVERGE SSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQAHSMSGNGAIAF DVEYARWLEEHNRHTNELRAAINSHAGDIELRTIVDNFMTQFDDLFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFR SSEILKLLVNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMAMGKL GTLAGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 27 | 377 | 351 | 1.1E-216 | – | |
PANTHER | 27 | 377 | 351 | 1.1E-216 | – | |
MobiDBLite | 33 | 94 | 62 | - | – | |
MobiDBLite | 34 | 64 | 31 | - | – | |
MobiDBLite | 65 | 94 | 30 | - | – | |
SMART | 88 | 151 | 64 | 3.2E-8 | ||
ProSiteProfiles | 90 | 134 | 45 | 9.415 | ||
Pfam | 92 | 132 | 41 | 6.5E-7 | ||
Gene3D | 92 | 139 | 48 | 1.5E-9 | – | |
SUPERFAMILY | 92 | 135 | 44 | 5.31E-7 | – | |
CDD | 92 | 144 | 53 | 5.47995E-22 | – | |
ProSitePatterns | 95 | 110 | 16 | - | ||
Coils | 111 | 138 | 28 | - | – | |
ProSiteProfiles | 157 | 374 | 218 | 33.465 | ||
Pfam | 174 | 249 | 76 | 1.5E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0663800.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…