Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Seed dormancy control
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | TGA-type basic leucine zipper protein TGA1.1 [Phaseolus vulgaris] gi|15148922|gb|AAK84888.1|AF402607_1 | 13 | ||
– | PREDICTED: transcription factor HBP-1b(c1)-like [Glycine max] gi|356499701|ref|XP_003518675.1| | 4 | ||
– | PREDICTED: transcription factor HBP-1b(c1)-like [Glycine max] gi|356499701|ref|XP_003518675.1| | 4 | ||
– | TGA-type basic leucine zipper protein TGA2.1 [Phaseolus vulgaris] gi|15148924|gb|AAK84889.1|AF402608_1 | 14 | ||
– | PREDICTED: transcription factor HBP-1b(c1)-like [Cicer arietinum] gi|502122910|ref|XP_004497935.1| | 14 | ||
– | TGA-type basic leucine zipper protein TGA1.1 [Phaseolus vulgaris] gi|15148922|gb|AAK84888.1|AF402607_1 | 13 | ||
– | PREDICTED: transcription factor TGA7-like [Glycine max] gi|356552851|ref|XP_003544776.1| | 12 | ||
– | Transcription factor bZIP83, partial [Glycine max] gi|145652349|gb|ABP88229.1| | 5 | ||
– | PREDICTED: transcription factor TGA3-like isoform X3 [Cicer arietinum] gi|502175012|ref|XP_004515653.1| | 11 | ||
– | PREDICTED: transcription factor HBP-1b(c1)-like [Glycine max] gi|356523320|ref|XP_003530288.1| | 5 | ||
– | PREDICTED: transcription factor HBP-1b(c1)-like [Glycine max] gi|356523320|ref|XP_003530288.1| | 5 | ||
– | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Cicer arietinum] gi|502108158|ref|XP_004493401.1| | 14 | ||
– | PREDICTED: transcription factor HBP-1b(c1)-like isoform X1 [Cicer arietinum] gi|502109068|ref|XP_004493558.1| | 13 | ||
– | PREDICTED: transcription factor HBP-1b(c1)-like isoform X1 [Cicer arietinum] gi|502109068|ref|XP_004493558.1| | 13 | ||
– | PREDICTED: transcription factor HBP-1b(c1)-like isoform X1 [Cicer arietinum] gi|502109068|ref|XP_004493558.1| | 13 | ||
– | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Glycine max] gi|356542019|ref|XP_003539469.1| | 13 | ||
– | TGA-type basic leucine zipper protein TGA2.1 [Phaseolus vulgaris] gi|15148924|gb|AAK84889.1|AF402608_1 | 14 | ||
– | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Glycine max] gi|356542019|ref|XP_003539469.1| | 13 | ||
– | PREDICTED: transcription factor HBP-1b(c38)-like [Cicer arietinum] gi|502139771|ref|XP_004503896.1| | 4 | ||
– | PREDICTED: transcription factor HBP-1b(c38)-like [Cicer arietinum] gi|502089967|ref|XP_004489078.1| | 4 | ||
– | PREDICTED: transcription factor HBP-1b(c1)-like [Glycine max] gi|356536334|ref|XP_003536694.1| | 13 | ||
– | Uncharacterized protein isoform 2 [Theobroma cacao] gi|508777159|gb|EOY24415.1| | 5 | ||
– | Transcription factor-like protein; TAIR: AT5G65210.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q39237|TGA1_ARATH Transcription factor TGA1; TrEMBL-Plants: tr|I3T7J6|I3T7J6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0150600 | 13 | ||
– | Transcription factor-like protein; TAIR: AT5G65210.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q39237|TGA1_ARATH Transcription factor TGA1; TrEMBL-Plants: tr|I3T7J6|I3T7J6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0150600 | 13 | ||
– | Transcription factor-like protein; TAIR: AT5G65210.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q39237|TGA1_ARATH Transcription factor TGA1; TrEMBL-Plants: tr|I3T7J6|I3T7J6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0150600 | 13 | ||
– | Transcription factor-like protein; TAIR: AT1G22070.1 transcription factor TGA3; Swiss-Prot: sp|Q39234|TGA3_ARATH Transcription factor TGA3; TrEMBL-Plants: tr|K7KMA1|K7KMA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0248400 | 12 | ||
– | Transcription factor-like protein; TAIR: AT1G22070.1 transcription factor TGA3; Swiss-Prot: sp|Q39234|TGA3_ARATH Transcription factor TGA3; TrEMBL-Plants: tr|K7KMA1|K7KMA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0248400 | 12 | ||
– | Transcription factor-like protein; TAIR: AT1G58330.1 transcription factor-like protein; Swiss-Prot: sp|Q84JC2|DOGL4_ARATH Protein DOG1-like 4; TrEMBL-Plants: tr|I1KKG2|I1KKG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0442700 | 6 | ||
– | Transcription factor-like protein; TAIR: AT1G58330.1 transcription factor-like protein; Swiss-Prot: sp|Q84JC2|DOGL4_ARATH Protein DOG1-like 4; TrEMBL-Plants: tr|I1KKG2|I1KKG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0442700 | 6 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|I3T9L1|I3T9L1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0663800 | 15 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|I3T9L1|I3T9L1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0663800 | 15 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|I3T9L1|I3T9L1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0663800 | 15 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|I3T9L1|I3T9L1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0663800 | 15 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|I3T9L1|I3T9L1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0663800 | 15 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|I3T9L1|I3T9L1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0663800 | 15 | ||
– | Transcription factor-like protein; TAIR: AT5G06950.1 bZIP transcription factor family protein; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|I3T9L1|I3T9L1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0663800 | 15 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|I3T9L1|I3T9L1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0663800 | 15 | ||
– | Transcription factor-like protein; TAIR: AT5G06839.3 bZIP transcription factor family protein; Swiss-Prot: sp|Q52MZ2|TGA10_TOBAC bZIP transcription factor TGA10; TrEMBL-Plants: tr|A0A0L9U7L8|A0A0L9U7L8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0724300 | 14 | ||
– | Transcription factor-like protein; TAIR: AT5G06839.2 bZIP transcription factor family protein; Swiss-Prot: sp|Q52MZ2|TGA10_TOBAC bZIP transcription factor TGA10; TrEMBL-Plants: tr|A0A151TUB5|A0A151TUB5_CAJCA Transcription factor HBP-1b(C1); Found in the gene: LotjaGi1g1v0724300 | 5 | ||
– | Transcription factor-like protein; TAIR: AT5G06839.3 bZIP transcription factor family protein; Swiss-Prot: sp|Q52MZ2|TGA10_TOBAC bZIP transcription factor TGA10; TrEMBL-Plants: tr|A0A151TUB5|A0A151TUB5_CAJCA Transcription factor HBP-1b(C1); Found in the gene: LotjaGi1g1v0724300 | 14 | ||
– | Transcription factor-like protein; TAIR: AT1G68640.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1); TrEMBL-Plants: tr|K7K7E4|K7K7E4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0279100 | 15 | ||
– | Transcription factor-like protein; TAIR: AT1G68640.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1); TrEMBL-Plants: tr|K7K7E4|K7K7E4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0279100 | 15 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|Q6IVC2|TGAL1_ORYSJ Transcription factor TGAL1; TrEMBL-Plants: tr|Q93XA1|Q93XA1_PHAVU TGA-type basic leucine zipper protein TGA2.1; Found in the gene: LotjaGi3g1v0108100 | 15 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1); TrEMBL-Plants: tr|Q93XA1|Q93XA1_PHAVU TGA-type basic leucine zipper protein TGA2.1; Found in the gene: LotjaGi3g1v0108100 | 14 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|Q6IVC2|TGAL1_ORYSJ Transcription factor TGAL1; TrEMBL-Plants: tr|Q93XA1|Q93XA1_PHAVU TGA-type basic leucine zipper protein TGA2.1; Found in the gene: LotjaGi3g1v0108100 | 15 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1); TrEMBL-Plants: tr|Q93XA1|Q93XA1_PHAVU TGA-type basic leucine zipper protein TGA2.1; Found in the gene: LotjaGi3g1v0108100 | 14 | ||
– | Transcription factor-like protein; TAIR: AT3G14880.2 transcription factor-like protein; Swiss-Prot: sp|Q84JC2|DOGL4_ARATH Protein DOG1-like 4; TrEMBL-Plants: tr|Q2HSA7|Q2HSA7_MEDTR Transcription factor TGA5-like protein; Found in the gene: LotjaGi3g1v0157800 | 5 | ||
– | Transcription factor-like protein; TAIR: AT1G08320.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q93XM6|TGA9_ARATH Transcription factor TGA9; TrEMBL-Plants: tr|A0A151RN10|A0A151RN10_CAJCA TGACG-sequence-specific DNA-binding protein TGA-2.1; Found in the gene: LotjaGi3g1v0176400 | 14 | ||
– | Transcription factor-like protein; TAIR: AT1G08320.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q93XM6|TGA9_ARATH Transcription factor TGA9; TrEMBL-Plants: tr|A0A151RN10|A0A151RN10_CAJCA TGACG-sequence-specific DNA-binding protein TGA-2.1; Found in the gene: LotjaGi3g1v0176400 | 14 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|Q93XA1|Q93XA1_PHAVU TGA-type basic leucine zipper protein TGA2.1; Found in the gene: LotjaGi3g1v0316800 | 15 | ||
– | Transcription factor-like protein; TAIR: AT5G06950.1 bZIP transcription factor family protein; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|Q93XA1|Q93XA1_PHAVU TGA-type basic leucine zipper protein TGA2.1; Found in the gene: LotjaGi3g1v0316800 | 6 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1); TrEMBL-Plants: tr|A0A0L9V351|A0A0L9V351_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0316800 | 14 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|Q6IVC2|TGAL1_ORYSJ Transcription factor TGAL1; TrEMBL-Plants: tr|K7MDC5|K7MDC5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0316800 | 15 | ||
– | Transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|Q93XA1|Q93XA1_PHAVU TGA-type basic leucine zipper protein TGA2.1; Found in the gene: LotjaGi3g1v0316800 | 15 | ||
– | Transcription factor-like protein; TAIR: AT1G08320.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q93XM6|TGA9_ARATH Transcription factor TGA9; TrEMBL-Plants: tr|A0A151TNY7|A0A151TNY7_CAJCA TGACG-sequence-specific DNA-binding protein TGA-2.1; Found in the gene: LotjaGi3g1v0477400 | 15 | ||
– | Transcription factor-like protein; TAIR: AT1G08320.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q93XM6|TGA9_ARATH Transcription factor TGA9; TrEMBL-Plants: tr|A0A151TNY7|A0A151TNY7_CAJCA TGACG-sequence-specific DNA-binding protein TGA-2.1; Found in the gene: LotjaGi3g1v0477400 | 15 | ||
– | Transcription factor-like protein; TAIR: AT1G08320.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q93XM6|TGA9_ARATH Transcription factor TGA9; TrEMBL-Plants: tr|A0A151TNY7|A0A151TNY7_CAJCA TGACG-sequence-specific DNA-binding protein TGA-2.1; Found in the gene: LotjaGi3g1v0477400 | 15 | ||
– | Transcription factor-like protein; TAIR: AT3G14880.2 transcription factor-like protein; Swiss-Prot: sp|Q58FV0|DOGL3_ARATH Protein DOG1-like 3; TrEMBL-Plants: tr|A0A1J7IHF4|A0A1J7IHF4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0412800 | 5 | ||
– | Transcription factor-like protein; TAIR: AT5G06839.3 bZIP transcription factor family protein; Swiss-Prot: sp|Q52MZ2|TGA10_TOBAC bZIP transcription factor TGA10; TrEMBL-Plants: tr|K7LI97|K7LI97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0143400 | 14 | ||
– | Transcription factor-like protein; TAIR: AT5G06839.3 bZIP transcription factor family protein; Swiss-Prot: sp|Q52MZ2|TGA10_TOBAC bZIP transcription factor TGA10; TrEMBL-Plants: tr|A0A151U2N8|A0A151U2N8_CAJCA Transcription factor HBP-1b(C1); Found in the gene: LotjaGi5g1v0143400 | 14 | ||
– | Transcription factor-like protein; TAIR: AT1G68640.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1); TrEMBL-Plants: tr|V7BDA6|V7BDA6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0341400 | 14 | ||
– | Transcription factor-like protein; TAIR: AT5G10030.1 TGACG motif-binding factor 4; Swiss-Prot: sp|Q39237|TGA1_ARATH Transcription factor TGA1; TrEMBL-Plants: tr|Q93XA2|Q93XA2_PHAVU TGA-type basic leucine zipper protein TGA1.1; Found in the gene: LotjaGi6g1v0084300 | 13 | ||
– | Transcription factor-like protein; TAIR: AT5G10030.1 TGACG motif-binding factor 4; Swiss-Prot: sp|Q39237|TGA1_ARATH Transcription factor TGA1; TrEMBL-Plants: tr|Q93XA2|Q93XA2_PHAVU TGA-type basic leucine zipper protein TGA1.1; Found in the gene: LotjaGi6g1v0084300 | 13 | ||
– | Transcription factor-related, putative; TAIR: AT4G18650.1 transcription factor-like protein; Swiss-Prot: sp|Q84JC2|DOGL4_ARATH Protein DOG1-like 4; TrEMBL-Plants: tr|I1M1S8|I1M1S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0322000 | 6 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
PTHR46354:SF2 | PANTHER | 1 | 1.56 |