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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0663800 |
| Transcript ID | LotjaGi1g1v0663800.8 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|I3T9L1|I3T9L1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0663800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122538260..122543247) extracted from Lotus japonicus Gifu genome v1.2.
TTGATCCTTCTGTTGCGGACTGTCACCGTTTCTTTTAACTCTTAAAAGTTGAGAGTGCACAACCTTCTGAAAGCTTTTCT TAATTGGCGACTTAAAAAGATTGCTGTGACTTTTTGTGTTCAAATCATCTCATGGATTTGTTGTTATATCTCGAGTAGCC AAGTTAGACTTTTCTTTAGCTTGAATAGGTGGATTTCACCAGTGTCGTCATAGCTCTCTGATCCTCCAGTGGATAATTTG GATATGCTTTTAATAACTCTTTTTTTACATGTTCTCATGCTTTTGGTGTTCAGGGGCATTGAAGCAACTAATGTTCATCC TTCTCGAATTTCTGAATTTGGAGCCCTCGAACAATCTCTTGGATTTCGTATTGAAGATACCATGAATCTTAGCAGAAGTA TGTTGCTCACTGTTTGATCTCTAACAGTTGGACTACCTTTTTTATGTCGTACTTCTTGTTACTGTGAAGTGTGGGCTGCT GTTTTATGAATTTAAGATCTTGTCTCGCATTCTCGTTGCTTATGTTGTTGTGCTTGCCAATGCTTTTTATTCAAAAGTGA ATCATATCCTTTCCAATTACATTTGTTTGTAACTTGCTGCTAAAGTAGGCCTTCCATTCTATTTCTACTTCTCGGGGCTA AATTTTTTATTGCTATGAATGATGCTAAAATGTTTGTACCTCAAGGAAATCTTGGTTTTCTTGATTTTTCTTGTGGATCT TTGTCTTTCTGAGCATTACTTTGTGAATTCACCATGGCTTACTGTGTCTGATGTTGTATAATTTATATTTAAAATCTAAT GAATCATATCTTCTCCAATGGTTTTCACTTGTTCCTAATCTGTTATTAACATGAGCCTTCATCAGATTTCTACCTACACT GTTCTAGAAGAAATTTGTGTTTCCTCAAGTGTGATCCTTCAAAAGCAATCAGAAGATATAGGATTATTGTTGGAATAAAA TAACTAGATGTTAAACCAAAAACTGTTTCATTAACCTCACAGAAAACTCATTAAAAAGTAACTGAACAATGATAGAAATA CATAGTATTAGAATAGTCGCCCCCCTCTTGTTGGCACTTAATCTAACCACCATGACCCTTTTATTTGTATATTATGTTTC AGATCCTGTGTTCAATCAAATGAAATCAAATAGCCAGGCTCTTGGTGCTGATATTCAGTTCGGTGCTTTGAGCAAGGTAA AATTATATCTTCTTTATGCGGTTATGTGCTTTCAATAATCAATTAACTGCAATATGATGAAGTCCTGGATTTCTCTTGCA TGTAAGATACAGTCAATTGCAACCTCGGATAATAACCTCTCTGCTGCAATTGCGGGGTCTCAGATGATGCCATTACAGAA AGACTCGCAACCAAATCTGGCTTCAACATCTGGAGGTCATCGCGAAAACTGGGGCGAGTCCAACACGGGTGATGCGAGCC CTACATCAACAGATGATACAGATGATAAAAATCAAATGGTGATTATTTTACTTTAATTATACAGTTTATTCAGCATCTGT AATTCAATCTATTCATCGATTGAAATCAAATGCCTATTGGTGATGCCCCCTGGAGTTATGATGTGATATTGGGGATAATT TTTCCTTCTAATTGTTCATTGTTATCAAACTTTTAAGAGCATGTTATTCATACTTTAAAAATGGTTCTTCATTGTTATTT TGCAGGTTGAAAGGGGTGAATCCAGTGATAGATCAAAAGATAAAACAGATCAAAAGGTTATATAAAGTAATCATATTCAC ATAACATAAGCTTTTGGTACTATATGTTAAATTTTTGTGTTCCATTCAGACATTAAGACGGCTGGCTCAAAATCGTGAAG CTGCTAGAAAAAGCCGACTGAGGAAAAAGGTAGGGCCTTTTGTTAATTGTAAATGAACTTGTAAACTTATTCCTTCTGTT GTAGCTTTGTTAGTTGTTAAATGTAGCATTGCTACATTGTTGACAAATGACAACTTTAAATATTTTGCATGCTTTGATTT CTTATTCTTTAAACCCTAATTTCTTTTCATTCAGGCATATGTGCAACAGTTAGAGAGTAGTAGGTTGAAACTTACATTGT TGACAAATGACAACTTTAAATATTTTGCATGCTTTGATTTCTTATTCTTTAAACCCTTATTTCTTTTCATTCAGGCATAT GTGCAACAGTTAGAGAGTAGTAGGTTGAAACTTACACAACTGGAGCAAGAGCTCCAGCGAGCTCGCCAGCAGGTTTGGTT GTGTTAATTTATTCATTTTATCCATTCAAAGTTTTGTTCTCATCCTTTTGAAACCCTTTTTTTCGTTAGCTTACATTAAT CTAGTTATGTTACTACAGCCTCTGTGACAATTTGGTTATTAATCTTTTTCCAGGGAATATTTATTTCAAGCACCGGAGAG CAGGCCCATTCAATGAGTGGAAATGGTATTAATCTTCTTTTACCTCTAATCGTATGCCTCAAGCTTGAAAATGTTTATTG CATTGAAATCCTTTCTACTTAAGCACTTATTGTACATGATAGAATATGGTTTTACTTGATGTGATTCGGACAGCATCATG TGTATGTGCATAAGTGCAAGCCTGTTATATGATTTTAAACTCTTACAACATAGCACCACATGGTGGTCATTGGCTGGGAT TTTCCGTATGTTTCTGTTATGTTTCAGATCATTAATCCATTGATTAATCATCTTGGTATGCAGGTGCTATAGCATTTGAT GTTGAATATGCGCGATGGTTAGAAGAACATAATAGGCATACCAATGAGCTAAGGGCTGCTATCAATTCTCATGCTGGAGA CATTGAACTTCGTACCATTGTTGACAATTTCATGACACAATTTGACGATCTCTTCAGGCTGAAAGGTATCGCTGCAAAAG CTGATGTTTTTCACATCCTGTCTGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCT TCAGAAATTCTCAAGGTGAGAATTTTTTTGTTTATTTATGCTTTATGGTTAGATATGATTTTTTCCTGGTCAACAATGTG CTGAAGTACAAGTGTGGCAATCAATTTATTATGATTTCTCAAAAACATTTTGTGCTTGTGTTCTGTTCATCCAGTGTGTG TATGGAAGTTCCGTAGCAATCTCTGTAAGAACAGTCTGCTTTACCTTTTGCTAATGTTTAACTAATTAATTATCTTTAAA AGGTTTGGGGAATGGTCAATCATATGAAGCTGTTTTTCATGCATCTCTCAAGCATGTGATTCATTTCCGGTGTACATACT TCTGTGTAAACGTGCTTTTAGTTCACAATAAAACTGACATGTGTTGTTATTGTATGGTACTGAATGATGAAATTGGATCA CTTGATGTGCTAGAGGAGGAATAATATATATTGTAATGCTAACAATAAACATTTTTTTTGTGCGCTGTTTTATGAACTGT GAGAGTTTGAAGACGATGGTTGAAAATAGCTAGGTGGTTGTATGAGAAGACATTTTCCTTGTTCATTTTTCATCTTGCCC TAGATCTTTGATAGATAAAGAGGTATTATAAATCTATCTTTGTGCCGATATGCTTTTTTCTCTATTTTATGGGATGGGGG GGGGGGGATTCCAACAAGTCCAATGGAAATTAACTAAGACAATGGTTCAGACCTTTTGAATGTTCTTCAGAAGTTTTAAT TCCATAATCATTCAATCGAAATGTGGAAACAATTTTAACGGGGACTGTTTTCCCCATCCTTCTAGTTTGGTTTGAAAATT ACTTCCCTAGTATTGAACACCCACCACATCCTCCGCACTATGAATATATATGATATATAAAGTGAGGGAAAAGCCCAGGG GATTCTAAATATACAGCAATTCAGCCCCTATGTTCTTGAAGTTGTTGAAAAAAAAAATCCAAGATATTCTTGAGGAACCT TATCTTGATACCAAGTTATTCAGGTTTTGAATTATCAAGTTCATTCCCTTTTGTCATGTGATGCCATCTAAAACTGGGTT GACACTATTTCAGCTTCTTGTAAATCAATTGGAGCCTTTAACTGAGCAACAATTGATGGGCATCTACAACTTGCAACAGT CATCCCAACAGGCCGAAGATGCTCTATCCCAAGGAATGGATGCATTGCAGCAATCACTATCTGAGACCTTGGCTAATGGT TCACCCAACCCATCAGGCTCTTCAGGAAATGTGGCCAACTACATGGGGCAAATGGCTATGGCGATGGGAAAGCTAGGTAC CCTCGCTGGATTTCTTCGCCAGGTAAACTAGCTGATTGTATCTGCATCTGTTTCCAATTTCTCAAACTTAAATCTTTTTG AAATGATGAGAAATCAGGAGTTTAGAACTGAATTTTAGATGGACATAGAAATAGAACCAAGTGTTTTTTTGTTTCTCAGT TATTTTTAAGTAAAAGAAGTTTTTACTTTTTATTCCATTTGGAAAAAAAGATCTATTCATTTTGTATAAAGTCGGATGCA AACTATTCTAGATATAGGCCACGTTTGGAAGAGTTTATTCGAGTTTATCTTATAGTAAATGTTTTGGAGAACATATATAA AATATAAATAGCTTATGACCTATCGTTAAACTGTTTTAAGCTTATTTTCATAAGCTACTAAGTTGAGCTTATGAATAAGT GCTTATATATGCACCTATAACATATTTTGAGCTTATTTCAATAAGCTTCTCAAATTAGCTTATGAATAAATGCTTACTCA ATAAGTGCTTAATTAAGTTGTTTACCCAAAAATGCACCTTAGTACAAATGTGATTGATTGATTCATCAGAAATGAAAGCA GTAGTTACAATATTTGTCGATTCACTTTTTCATGTTACTAGGCTGATAATCTGCGGCAGCAAACATTGCAACAAATGCTT AGGATATTAACAACTAGACAATCCGCTCGAGCCCTTCTCGCAATAAGTGATTATTTCTCCCGGCTGCGAGCCCTGAGTTC TCTCTGGCTGGCCAGGCCACGGGAGTGA
CDS sequence (LotjaGi1g1v0663800.8) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCTTAGCAGAAATCCTGTGTTCAATCAAATGAAATCAAATAGCCAGGCTCTTGGTGCTGATATTCAGTTCGGTGC TTTGAGCAAGATGATGCCATTACAGAAAGACTCGCAACCAAATCTGGCTTCAACATCTGGAGGTCATCGCGAAAACTGGG GCGAGTCCAACACGGGTGATGCGAGCCCTACATCAACAGATGATACAGATGATAAAAATCAAATGGTTGAAAGGGGTGAA TCCAGTGATAGATCAAAAGATAAAACAGATCAAAAGACATTAAGACGGCTGGCTCAAAATCGTGAAGCTGCTAGAAAAAG CCGACTGAGGAAAAAGGCATATGTGCAACAGTTAGAGAGTAGTAGGTTGAAACTTACACAACTGGAGCAAGAGCTCCAGC GAGCTCGCCAGCAGGGAATATTTATTTCAAGCACCGGAGAGCAGGCCCATTCAATGAGTGGAAATGGTGCTATAGCATTT GATGTTGAATATGCGCGATGGTTAGAAGAACATAATAGGCATACCAATGAGCTAAGGGCTGCTATCAATTCTCATGCTGG AGACATTGAACTTCGTACCATTGTTGACAATTTCATGACACAATTTGACGATCTCTTCAGGCTGAAAGGTATCGCTGCAA AAGCTGATGTTTTTCACATCCTGTCTGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGC TCTTCAGAAATTCTCAAGCTTCTTGTAAATCAATTGGAGCCTTTAACTGAGCAACAATTGATGGGCATCTACAACTTGCA ACAGTCATCCCAACAGGCCGAAGATGCTCTATCCCAAGGAATGGATGCATTGCAGCAATCACTATCTGAGACCTTGGCTA ATGGTTCACCCAACCCATCAGGCTCTTCAGGAAATGTGGCCAACTACATGGGGCAAATGGCTATGGCGATGGGAAAGCTA GGTACCCTCGCTGGATTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACATTGCAACAAATGCTTAGGATATTAACAAC TAGACAATCCGCTCGAGCCCTTCTCGCAATAAGTGATTATTTCTCCCGGCTGCGAGCCCTGAGTTCTCTCTGGCTGGCCA GGCCACGGGAGTGA
Protein sequence (LotjaGi1g1v0663800.8) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLSRNPVFNQMKSNSQALGADIQFGALSKMMPLQKDSQPNLASTSGGHRENWGESNTGDASPTSTDDTDDKNQMVERGE SSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQAHSMSGNGAIAF DVEYARWLEEHNRHTNELRAAINSHAGDIELRTIVDNFMTQFDDLFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFR SSEILKLLVNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMAMGKL GTLAGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 27 | 377 | 351 | 1.1E-216 | – | |
| PANTHER | 27 | 377 | 351 | 1.1E-216 | – | |
| MobiDBLite | 33 | 94 | 62 | - | – | |
| MobiDBLite | 34 | 64 | 31 | - | – | |
| MobiDBLite | 65 | 94 | 30 | - | – | |
| SMART | 88 | 151 | 64 | 3.2E-8 | ||
| ProSiteProfiles | 90 | 134 | 45 | 9.415 | ||
| Pfam | 92 | 132 | 41 | 6.5E-7 | ||
| Gene3D | 92 | 139 | 48 | 1.5E-9 | – | |
| SUPERFAMILY | 92 | 135 | 44 | 5.31E-7 | – | |
| CDD | 92 | 144 | 53 | 5.47995E-22 | – | |
| ProSitePatterns | 95 | 110 | 16 | - | ||
| Coils | 111 | 138 | 28 | - | – | |
| ProSiteProfiles | 157 | 374 | 218 | 33.465 | ||
| Pfam | 174 | 249 | 76 | 1.5E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0663800.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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