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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0690200 |
| Transcript ID | LotjaGi1g1v0690200.10 |
| Related isoforms 9 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ0|A0PBZ0_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125791240..125793580) extracted from Lotus japonicus Gifu genome v1.2.
ATCATATATACTAAGATGGCACCAACCACCAACAGCAACCACGAGAGCCTAAATAGTTCCATCTTCTGCACTGCTGCTAA AGCAGGCAGTGATCCCTTGAGTTGGGGTGTAGCAGCAGATTCGATGAAGGGGAGCCACCTGGATGAGGTCAAGCGCATGG TGGCTGAGTACAGGAAGCCTGTGGTCAAGCTAGGCGGGGAAACTCTGACCATAGCTCAGGTAGCTGCCATTGCAGCAAAC GACCAAGGCGTAAGCGTTGAGCTGTGCGAATCAGCTAGAGCTGGCGTTAAGGCGAGCAGTGACTGGGTGATGAACAGCAT GAACAATGGCACTGACAGTTACGGTGTCACCACCGGCTTTGGCGCCACCTCCCACCGCAGAACCAAAAATGGCAATGCTT TGCAGCTAGAACTCATTAGGTAATAACTCAATTCCAATTTCAGCACACATAACTAACTACTTGCAGTTTAATTTATTTTC CATCCACTTCCTAATTAATTCATTCCTAACTCCTAATTGATTAGTCATCAGATATACATATACATTTCATTAAATAAAAG TTGTTGATGTTAATATGTTCTTGTTCTTCAGGTTTCTGAATGCTGGAATATTTGGCAATGGTACAGAAACAAGTCACACA CTACCACAGCCTGCAACTAGAGCAGCGATGCTAGTGAGGATCAACACTCTTCTCCAAGGATACTCAGGCATTAGGTTTGA AATTCTAGAAGCTATCACCAAGCTCATCAACAACAACATCACCCCATGTTTACCACTTCGTGGTACTGTCACGGCCTCCG GTGATCTGGTCCCTCTTTCTTACATTGCCGGCTTGCTTACTGGCCGACAAAACTCCAAAGCTGTTGGACCATCTGGCAAG GTACTTAATGCCAAGGAAGCTTTCCAATCAGCTGGCATAGACTCAGGGTTCTTTGAATTGCAGCCCAAGGAAGGGCTTGC TCTTGTTAATGGCACTGCTGTTGGTTCTGGGTTAGCTTCTATTGTTCTCTTTGATGCGAACATTTTGGCTATACTGTCTG AAGTTTTATCGGCTATTTTTGCCGAAGTGATGCAAGGGAAACCTGAATTTACCGACCATTTGACACATAAGTTAAAGCAC CACCCTGGCCAAATTGAGGCTGCTGCTATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCTGCAAAGAAGTT GCATGAGGTGGATCCTTTGCAAAAGCCAAAACAAGATCGATATGCACTTAGAACTTCACCTCAGTGGCTTGGCCCTCTGA TTGAAGTGATTCGATTCTCAACAAAGTCGATCGAGAGAGAGATTAATTCTGTGAACGACAACCCTTTGATTGATGTTTCC AGAAACAAGGCCTTGCACGGTGGTAATTTCCAAGGGACCCCTATTGGAGTTTCCATGGACAACACACGTCTGGCCCTTGC AGCAATTGGAAAACTCATGTTTGCTCAGTTCACTGAGCTTGTGGATGACCACTACAACAATGGCTTACCTTCAAATCTCA CTGCTAGTAGAAATCCCAGCTTGGATTACGGTCTTAAGGGAGCTGAAATTGCAATGGCTTCTTATTGCTCTGAACTCCAA TATCTTGCAAATCCAGTCACAACTCATGTCCAAAGTGCTGAGCAACACAACCAAGACGTGAACTCTTTGGGTTTGATTTC TTCTAGAAAAACCAACGAAGCCGTTGAGATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTG ACTTGAGGCATTTGGAGGAGAACTTGAAATACTCAGTGAAGAGCACTGTAAGTCAAGTTGCCAAGAGGACTCTTACCACA GGTGTCAACGGAGAACTCCATCCTTCCAGGTTTTGTGAAAAAGATTTGCTGAAGGTGGTCGATAGGGAAGCTGTATTTGC CTACATTGATGACCCTTGCCTTGCTACTTACCCATTGATGCAGAAACTGAGGCAAGTGCTTGTGGATCATGCTTTAGTAA ATGGAGAAAACGAGAAGGACTCAAAGACATCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGAGTCTCTTG CCAAAGGAGGTTGAAAGTGCAAGGGCTGCATATGAGAGTGGCAATCCAACAATTTCAAACAAGATTAACGAATGCAGGTC TTATCCATTGTACAAGTTTGTGAGGGAGGAGCTGGGAACTGAGTTGCTAACTGGTGAAAAGTCCAGGTCACCAGGCGAGG AGTGTGACAAATTGTTCACAGCAATATGCCAGGGTAAAATTATTGATCCTCTTTTGGAATGCCTTGGGGAGTGGAACGGT GCCCCTCTTCCAATATGCTAA
CDS sequence (LotjaGi1g1v0690200.10) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCAACCACCAACAGCAACCACGAGAGCCTAAATAGTTCCATCTTCTGCACTGCTGCTAAAGCAGGCAGTGATCC CTTGAGTTGGGGTGTAGCAGCAGATTCGATGAAGGGGAGCCACCTGGATGAGGTCAAGCGCATGGTGGCTGAGTACAGGA AGCCTGTGGTCAAGCTAGGCGGGGAAACTCTGACCATAGCTCAGGTAGCTGCCATTGCAGCAAACGACCAAGGCGTAAGC GTTGAGCTGTGCGAATCAGCTAGAGCTGGCGTTAAGGCGAGCAGTGACTGGGTGATGAACAGCATGAACAATGGCACTGA CAGTTACGGTGTCACCACCGGCTTTGGCGCCACCTCCCACCGCAGAACCAAAAATGGCAATGCTTTGCAGCTAGAACTCA TTAGGTTTCTGAATGCTGGAATATTTGGCAATGGTACAGAAACAAGTCACACACTACCACAGCCTGCAACTAGAGCAGCG ATGCTAGTGAGGATCAACACTCTTCTCCAAGGATACTCAGGCATTAGGTTTGAAATTCTAGAAGCTATCACCAAGCTCAT CAACAACAACATCACCCCATGTTTACCACTTCGTGGTACTGTCACGGCCTCCGGTGATCTGGTCCCTCTTTCTTACATTG CCGGCTTGCTTACTGGCCGACAAAACTCCAAAGCTGTTGGACCATCTGGCAAGGTACTTAATGCCAAGGAAGCTTTCCAA TCAGCTGGCATAGACTCAGGGTTCTTTGAATTGCAGCCCAAGGAAGGGCTTGCTCTTGTTAATGGCACTGCTGTTGGTTC TGGGTTAGCTTCTATTGTTCTCTTTGATGCGAACATTTTGGCTATACTGTCTGAAGTTTTATCGGCTATTTTTGCCGAAG TGATGCAAGGGAAACCTGAATTTACCGACCATTTGACACATAAGTTAAAGCACCACCCTGGCCAAATTGAGGCTGCTGCT ATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCTGCAAAGAAGTTGCATGAGGTGGATCCTTTGCAAAAGCC AAAACAAGATCGATATGCACTTAGAACTTCACCTCAGTGGCTTGGCCCTCTGATTGAAGTGATTCGATTCTCAACAAAGT CGATCGAGAGAGAGATTAATTCTGTGAACGACAACCCTTTGATTGATGTTTCCAGAAACAAGGCCTTGCACGGTGGTAAT TTCCAAGGGACCCCTATTGGAGTTTCCATGGACAACACACGTCTGGCCCTTGCAGCAATTGGAAAACTCATGTTTGCTCA GTTCACTGAGCTTGTGGATGACCACTACAACAATGGCTTACCTTCAAATCTCACTGCTAGTAGAAATCCCAGCTTGGATT ACGGTCTTAAGGGAGCTGAAATTGCAATGGCTTCTTATTGCTCTGAACTCCAATATCTTGCAAATCCAGTCACAACTCAT GTCCAAAGTGCTGAGCAACACAACCAAGACGTGAACTCTTTGGGTTTGATTTCTTCTAGAAAAACCAACGAAGCCGTTGA GATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGA AATACTCAGTGAAGAGCACTGTAAGTCAAGTTGCCAAGAGGACTCTTACCACAGGTGTCAACGGAGAACTCCATCCTTCC AGGTTTTGTGAAAAAGATTTGCTGAAGGTGGTCGATAGGGAAGCTGTATTTGCCTACATTGATGACCCTTGCCTTGCTAC TTACCCATTGATGCAGAAACTGAGGCAAGTGCTTGTGGATCATGCTTTAGTAAATGGAGAAAACGAGAAGGACTCAAAGA CATCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGAGTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCT GCATATGAGAGTGGCAATCCAACAATTTCAAACAAGATTAACGAATGCAGGTCTTATCCATTGTACAAGTTTGTGAGGGA GGAGCTGGGAACTGAGTTGCTAACTGGTGAAAAGTCCAGGTCACCAGGCGAGGAGTGTGACAAATTGTTCACAGCAATAT GCCAGGGTAAAATTATTGATCCTCTTTTGGAATGCCTTGGGGAGTGGAACGGTGCCCCTCTTCCAATATGCTAA
Protein sequence (LotjaGi1g1v0690200.10) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPTTNSNHESLNSSIFCTAAKAGSDPLSWGVAADSMKGSHLDEVKRMVAEYRKPVVKLGGETLTIAQVAAIAANDQGVS VELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGNALQLELIRFLNAGIFGNGTETSHTLPQPATRAA MLVRINTLLQGYSGIRFEILEAITKLINNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRQNSKAVGPSGKVLNAKEAFQ SAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFDANILAILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAA IMEHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGN FQGTPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTH VQSAEQHNQDVNSLGLISSRKTNEAVEILKLMSSTFLIALCQAIDLRHLEENLKYSVKSTVSQVAKRTLTTGVNGELHPS RFCEKDLLKVVDREAVFAYIDDPCLATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPKEVESARA AYESGNPTISNKINECRSYPLYKFVREELGTELLTGEKSRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 717 | 706 | 0.0 | – | |
| PANTHER | 12 | 717 | 706 | 0.0 | ||
| Gene3D | 25 | 263 | 239 | 1.7E-95 | ||
| SUPERFAMILY | 26 | 717 | 692 | 7.14E-262 | ||
| TIGRFAM | 26 | 706 | 681 | 0.0 | ||
| CDD | 62 | 527 | 466 | 0.0 | ||
| Pfam | 64 | 531 | 468 | 8.8E-153 | ||
| ProSitePatterns | 199 | 215 | 17 | - | ||
| Gene3D | 264 | 706 | 443 | 3.1E-218 | – | |
| Gene3D | 530 | 644 | 115 | 3.1E-218 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | L-phenylalanine catabolic process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. | ||
| Molecular function | Ammonia-lyase activity | Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. |
Expression pattern of LotjaGi1g1v0690200.10, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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