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TIGR01226

Source: TIGRFAM

Description

phe_am_lyase: phenylalanine ammonia-lyase

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006559
Biological process L-phenylalanine catabolic process The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid.
Subterm of
GO:0016841
Molecular function Ammonia-lyase activity Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate.
Subterm of

Associated Lotus transcripts 45

Transcript Name Description Predicted domains Domain count
Lj0g3v0121549.1
– Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142392|dbj|BAF36971.1|
Domains
16
Lj0g3v0121559.1
–
Domains
16
Lj0g3v0350889.1
– Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142394|dbj|BAF36972.1|
Domains
16
Lj1g3v4590760.2
– Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142390|dbj|BAF36970.1|
Domains
16
Lj1g3v4590760.3
– Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142392|dbj|BAF36971.1|
Domains
16
Lj1g3v4590770.1
– Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142390|dbj|BAF36970.1|
Domains
16
Lj1g3v4590840.1
– Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142384|dbj|BAF36967.1|
Domains
16
Lj1g3v4590850.1
– Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142392|dbj|BAF36971.1|
Domains
16
Lj1g3v4590850.2
– Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142392|dbj|BAF36971.1|
Domains
16
Lj2g3v3339740.1
– PREDICTED: phenylalanine ammonia-lyase class 3-like [Cicer arietinum] gi|502100067|ref|XP_004491627.1|
Domains
16
Lj3g3v0602620.1
– Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142392|dbj|BAF36971.1|
Domains
16
Lj3g3v0602630.1
– Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142392|dbj|BAF36971.1|
Domains
16
Lj3g3v0602640.1
–
Domains
16
Lj5g3v0659760.1
– Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142402|dbj|BAF36976.1|
Domains
17
Lj5g3v1811400.1
– PREDICTED: phenylalanine ammonia-lyase 2-like isoform X1 [Cicer arietinum] gi|502118418|ref|XP_004496257.1|
Domains
16
LotjaGi1g1v0004200.1
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P19143|PAL3_PHAVU Phenylalanine ammonia-lyase class 3; TrEMBL-Plants: tr|A0A0R4J2S3|A0A0R4J2S3_SOYBN Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0004200
Domains
16
LotjaGi1g1v0004200.2
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P19143|PAL3_PHAVU Phenylalanine ammonia-lyase class 3; TrEMBL-Plants: tr|A0A0R4J2S3|A0A0R4J2S3_SOYBN Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0004200
Domains
16
LotjaGi1g1v0004200.3
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P19143|PAL3_PHAVU Phenylalanine ammonia-lyase class 3; TrEMBL-Plants: tr|A0A0R4J2S3|A0A0R4J2S3_SOYBN Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0004200
Domains
16
LotjaGi1g1v0690200.1
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200
Domains
16
LotjaGi1g1v0690200.10
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ0|A0PBZ0_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200
Domains
16
LotjaGi1g1v0690200.2
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200
Domains
16
LotjaGi1g1v0690200.3
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200
Domains
16
LotjaGi1g1v0690200.4
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200
Domains
16
LotjaGi1g1v0690200.5
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200
Domains
16
LotjaGi1g1v0690200.6
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ0|A0PBZ0_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200
Domains
16
LotjaGi1g1v0690200.7
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ0|A0PBZ0_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200
Domains
16
LotjaGi1g1v0690200.8
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200
Domains
16
LotjaGi1g1v0690200.9
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200
Domains
16
LotjaGi1g1v0690300.1
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ3|A0PBZ3_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300
Domains
16
LotjaGi1g1v0690300.10
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300
Domains
16
LotjaGi1g1v0690300.11
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300
Domains
16
LotjaGi1g1v0690300.2
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300
Domains
16
LotjaGi1g1v0690300.3
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ3|A0PBZ3_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300
Domains
16
LotjaGi1g1v0690300.4
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300
Domains
16
LotjaGi1g1v0690300.5
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300
Domains
16
LotjaGi1g1v0690300.6
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ3|A0PBZ3_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300
Domains
16
LotjaGi1g1v0690300.7
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ3|A0PBZ3_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300
Domains
16
LotjaGi1g1v0690300.8
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300
Domains
16
LotjaGi1g1v0690300.9
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300
Domains
16
LotjaGi3g1v0071500.1
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi3g1v0071500
Domains
16
LotjaGi5g1v0080000.1
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ9|A0PBZ9_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi5g1v0080000
Domains
17
LotjaGi5g1v0102000.1
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ5|A0PBZ5_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi5g1v0102000
Domains
16
LotjaGi5g1v0272900.1
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|Q9SMK9|PAL2_CICAR Phenylalanine ammonia-lyase 2; TrEMBL-Plants: tr|K7N485|K7N485_SOYBN Phenylalanine ammonia-lyase; Found in the gene: LotjaGi5g1v0272900
Domains
16
LotjaGi6g1v0093700.1
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|Q01861|PAL1_PEA Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi6g1v0093700
Domains
16
LotjaGi6g1v0093700.2
– Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|Q01861|PAL1_PEA Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi6g1v0093700
Domains
16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00332 CDD 1 2.22