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IPR001106 is a Aromatic amino acid lyase.
<p>This family includes phenylalanine ammonia-lyase, (PAL; [ec:4.3.1.24]), histidine ammonia-lyase, (HAL; [ec:4.3.1.3]), and tyrosine aminomutase, ([ec:5.4.3.6]) [[cite:PUB00057431], [cite:PUB00023551], [cite:PUB00057432]].</p> <p>PAL and HAL are members of the Lyase class I_like superfamily of enzymes that, catalyze similar beta-elimination reactions and are active as homotetramers. Both PAL and HAL contain a catalytic Ala-Ser-Gly triad that is post-translationally cyclised [[cite:PUB00035855]]. PAL is a key biosynthetic catalyst in phenylpropanoid assembly in plants and fungi, and is involved in the biosynthesis of a wide variety of secondary metabolites such as flavanoids, furanocoumarin phytoalexins and cell wall components. These compounds are important for normal growth and in responses to environmental stress. HAL catalyses the first step in histidine degradation, the removal of an ammonia group from histidine to produce urocanic acid. The core domain in PAL and HAL share about 30% sequence identity, with PAL containing an additional approximately 160 residues extending from the common fold [[cite:PUB00031359]]. Tyrosine 2,3-aminomutase has aminomutase activity and, to a much lesser extent, ammonia-lyase activity [[cite:PUB00057433]].</p> <p>PAL is being explored as enzyme substitution therapy for Phenylketonuria (PKU), a disorder which involves an inability to metabolize phenylalanine. HAL failure in humans results in the disease histidinemia [[cite:PUB00079866], [cite:PUB00014374], [cite:PUB00079867], [cite:PUB00025286]].</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | Phenylalanine ammonia-lyase, partial [Corylus avellana] gi|480359523|gb|AGJ84136.1| | 8 | ||
– | Phenylalanine ammonia-lyase [Lotus corniculatus] gi|56112437|gb|AAV71173.1| | 7 | ||
– | Phenylalanine ammonia-lyase, partial [Prunus armeniaca] gi|117067269|gb|ABK32083.1| | 9 | ||
– | Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142392|dbj|BAF36971.1| | 16 | ||
– | 16 | |||
– | Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142384|dbj|BAF36967.1| | 7 | ||
– | PREDICTED: phenylalanine ammonia-lyase 2-like isoform X1 [Cicer arietinum] gi|502118418|ref|XP_004496257.1| | 10 | ||
– | Phenylalanine ammonia-lyase [Lotus corniculatus] gi|56112437|gb|AAV71173.1| | 7 | ||
– | Phenylalanine ammonia-lyase, partial [Prunus armeniaca] gi|117067269|gb|ABK32083.1| | 9 | ||
– | Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142394|dbj|BAF36972.1| | 16 | ||
– | Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142390|dbj|BAF36970.1| | 16 | ||
– | Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142392|dbj|BAF36971.1| | 16 | ||
– | Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142390|dbj|BAF36970.1| | 16 | ||
– | Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142384|dbj|BAF36967.1| | 16 | ||
– | Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142392|dbj|BAF36971.1| | 16 | ||
– | Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142392|dbj|BAF36971.1| | 16 | ||
– | PREDICTED: phenylalanine ammonia-lyase class 3-like [Cicer arietinum] gi|502100067|ref|XP_004491627.1| | 16 | ||
– | Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142392|dbj|BAF36971.1| | 16 | ||
– | Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142392|dbj|BAF36971.1| | 16 | ||
– | 16 | |||
– | PREDICTED: histidine--tRNA ligase-like [Cicer arietinum] gi|502122299|ref|XP_004497677.1| | 23 | ||
– | PREDICTED: histidyl-tRNA synthetase-like [Glycine max] gi|356527823|ref|XP_003532506.1| | 5 | ||
– | Phenylalanine ammonia-lyase [Lotus japonicus] gi|118142402|dbj|BAF36976.1| | 17 | ||
– | PREDICTED: phenylalanine ammonia-lyase 2-like isoform X1 [Cicer arietinum] gi|502118418|ref|XP_004496257.1| | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P19143|PAL3_PHAVU Phenylalanine ammonia-lyase class 3; TrEMBL-Plants: tr|A0A0R4J2S3|A0A0R4J2S3_SOYBN Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0004200 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P19143|PAL3_PHAVU Phenylalanine ammonia-lyase class 3; TrEMBL-Plants: tr|A0A0R4J2S3|A0A0R4J2S3_SOYBN Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0004200 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P19143|PAL3_PHAVU Phenylalanine ammonia-lyase class 3; TrEMBL-Plants: tr|A0A0R4J2S3|A0A0R4J2S3_SOYBN Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0004200 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ0|A0PBZ0_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ0|A0PBZ0_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ0|A0PBZ0_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690200 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ3|A0PBZ3_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ3|A0PBZ3_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ3|A0PBZ3_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ3|A0PBZ3_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi1g1v0690300 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi3g1v0071500 | 16 | ||
– | Histidine--tRNA ligase; TAIR: AT3G02760.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|F4IYF8|SYHC_ARATH Histidine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|A0A072VJI1|A0A072VJI1_MEDTR Histidyl-tRNA synthetase; Found in the gene: LotjaGi4g1v0456100 | 24 | ||
– | Histidine--tRNA ligase; TAIR: AT3G02760.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|F4IYF8|SYHC_ARATH Histidine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|A0A072VJI1|A0A072VJI1_MEDTR Histidyl-tRNA synthetase; Found in the gene: LotjaGi4g1v0456100 | 12 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ9|A0PBZ9_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi5g1v0080000 | 17 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ5|A0PBZ5_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi5g1v0102000 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|Q9SMK9|PAL2_CICAR Phenylalanine ammonia-lyase 2; TrEMBL-Plants: tr|K7N485|K7N485_SOYBN Phenylalanine ammonia-lyase; Found in the gene: LotjaGi5g1v0272900 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|Q01861|PAL1_PEA Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi6g1v0093700 | 16 | ||
– | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|Q01861|PAL1_PEA Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi6g1v0093700 | 16 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd00332 | CDD | 1 | 1.79 |