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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0695900 |
| Transcript ID | LotjaGi1g1v0695900.1 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine/serine-rich splicing factor, putative; TAIR: AT3G53500.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein; Swiss-Prot: sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32; TrEMBL-Plants: tr|I3S601|I3S601_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0695900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126330405..126334721) extracted from Lotus japonicus Gifu genome v1.2.
TCCACTTCGCAAGGGTTAGGTTTCGAGAGAGAAATCAGCAAACTACCCAAAGGTACCTCCTCTCTCAATTCGATTCCATC TTCTTCTTCTTTCTTTTCTGGTTTGTGATTTCAATCGGAATTTTCCATCGCACGCTTTTTCTTGTCAATTAATTATCCCC TCAATTGAATCGATTGGATCCCTTTTGTTAATTCTCGAAAGGATTTGTTCTTGCAGTATTTTGATTTTGATTTGTTTCAA TTTGTCGTGATAATTGCAATTGGAGTTAGGGTTGTTTCTCTGTGATCAATTCCTCAGTTAATTACGCAATTTCTGTTTGT TGTGTGTTTCAGAGCTTACAAGGAATCAACAATGCCTCGCTATGATGATAAGTATGGTAACACCCGCCTCTATGTGGGTC GCTTGTCTTCCAGGACGCGTTCCCGTGATCTCGAGCGAGTCTTCAGCAGATATGGAAGGTAACTCCCCTTCTTATCACCA AAATATGCATAGATATACTCTTGGTTACTGCTCAATGCAATCTTGGGACATTGTTGTTTGCAATGCTTTGGTATCTTTTC TGTGTTTGTTCTGTCATGCCATGGTTGCTTTTGTGTATATATTGGATAGGATAGGATTGGATAGGATGAATAACTTCAAT TCTATGATTACCTCCTTTTTTTCGCTGAGAGTCGCAAAGAACTTTTGTTGTAGCACATTGTTGTTCAATTTGTGTCAATT CATGTGTGGAAAACTGATTATCATTTACAATGGGCAAGAGAGATAAATTAGGGATAAGTGGGCGTGGGGTGCCGTCCATG TGTTGCGCTGGAATTTAAGGGCTAATATACAGGCTTTTCCAAGCTTCGTATTGCGCTTGGATTTATGAATTGGTTATTCG TCATGTTATTAGTGGGAACGATATCCCTTAGGTGTCTTGTTTTAACTTGAATGATCTTGTTGAAGGTTTCTGGGGTTTTG GCCAAATCTGAAGGTCTGTGGTGGGAGGGTGTCCTTGGTGGAATTGGTGCAATCCCCCTAGTATCTCCTTTGGCGATTCT TTCTGTAATGTTATTGCGTGTTTTTATGGAATTGGCAACAATCACAAACTGGTGTTTAGTTCTGTCTTTGAGGGGCGCAG TATCATGCAGTTCCAGTAGTTAAGTAATGATGGCCTTACTGTTTATGGAAACCATTTCCGCAGAGTTCGAGACGTGGATA TGAAGCGTGATTATGCCTTTGTTGTAAGTTGTCACCCTTTCCCTGTCTCTGTTCTTTATTCCTTTTGGCTTCTATTTTTC CTCATGCTTTTGATTAAAGGTGGCTTCTAGTATCTGCTTGGGGGAAATCAGGTGTAAATGTTGGCAAGATTTATGTGTTG CTTTCCTGCCTTGGTCCTTACATCTTTTGAACAGGAATTTAGCGATCCTCGAGATGCTGATGATGCAAGATATAACTTGG ATGGACGTGATGTTGATGGAAGTCGTCTTATTGTTGAATTTGCAAAAGGGGTAGGAATACTTCCCTTTGAGGCTTATCAG TACCAGTTTTTTATTGGTTATTTTAGTCTTATTATATCATTTATAATTAACTATCAATGTGATCTTTCCTTTGGTGCTAT ACTATTGGTTAATGCATGTCTGTAAAAGAGTCGAGATATTTCATTTGAAAGAGCTTACTCCATATGTTCACATTTACATG CATTGGATCTTAAAGTTACGTACAGTGACATGATCCTTGTGTTTGTGTTTGAGCGCACCAATTTTGCAAAGGCAGTATGT GTTTGTGTCACTTTTATAATCTATAAATAAACTTTTTCCTATCCTCAGTGTCTCACCAACATTGTTTACTTCAGTGATTC TTTCGATATATTGATTCTGGTTATAAACTTTTAACTGGAATTGTCCCTCGACTGATTAGAATCCTGCCTCGAATAATATT GAAATTTTGCATTTAGTTTTTTTTGCTTCACTATTAGCTTTTGTGCTATTGAACCATCCTCTTTTTATGTACTAGTTGTT TAAATTAGAGAGTAAATTACACTCCCCTTTCCCGAGTGACGCCTAAATTACTGTCCTCTCCTTCAATGTAAATAATATCA CTAATCTTTCTTTAAGATAAACATGTGTTGCATTTTTGTCTATTACTGCCCTCTCCTTTAATGTAATTAATATCAGTACC CTGTATTTACGATATACAAGTGTTGCATTTTTTGTCTATTTGAGCAACCTTCTTGCATACCTCTTTTTCCTCCATTTGTT ATTCTTGTGATCATGAGCATATAGTTTTGAACTCATCAACCATTAGACTATGCAAGTTGAAATGAAGGGTTTTCGTACAG TTTTGAAGTGTTGATAATATGAGTGCTATAAACAACATTATATCCACTGAAGTCCTAAAATCAATAATAAGTTGCTCAAA ACTAGTTGTCTTTAACATTTAACATTTTTAGAGAAAGGAAATATATTTTGGGGGACTCAATTGTAGTTGCTTACCATCAC TAAAAGGAGACGCAATAATATTTTGGGAGACTCATCAATTGACTCTTCTGTGGATGGTATTTTATTATTGTAGTGGTTGC TTGAATACTTTTCATAGTATCAATTGTTTGTGTACTCTGGCATTCCTGATCTTGTTTCGATTGTCTTTATGTGGTTTTTA ATTATTCAGGTTCCCCGTGGTTCTCGTGAAGGGGGCGGGGGCCGGGACCGCGACCGGGAATATATGGGTCGTGGTCCACC TCCTGGATCTGGACGCTGCTTTAACTGTGGTATTGATGGCCACTGGGCTCGAGATTGCAAAGCTGGGGATTGGAAGAACA AGTGTTATAGATGTGGAGAGAGAGGTCATATAGAAAAGAACTGCAAGAACAGTCCCAAAAAGTTGAGGTAGGCTCCAAAC TGCTGCTGCATTGTCACTTTGTTTTTAACATGGCTACTGCAATATTGCTTTCTAATGGATTTTCTGAGCTTTTATACTGA TGGTTTCAATTTTACTTTTTCTGTAAGTCGACACCCTAGGAGTGATTCACGTTCACCAGTCAGGTCACGATCTCCTAGGC GTGGCAGGAGCCGGGATCGAAGTTACACCCCAGAGCGCAGCTACAGGTATAATACTGTTGGTCGTTGAGTCTAACATGTG ATGCAGTTGTTATGCTGCAAGGTTTCATTTATAATTAACATTTTTTTGTTCTAGATGTCTTGTTTGCCGTTGTATCTGTT ATCTTTCTGTGAATTCTTTTACTTTTTAAGCTAAACTTTGGGTGCCTTTGTGGTTGCCAGCCGATCAAGATCCCCAGTCA GAAGAGATCGAAGCCCTTTTCCTGAAGATCGATCAAGGAGTCCTCCCTCCAGGACAAGGAAGCATAGTCTATCTCCTGAC CTAGACAGCCCACAGAAGAGAAGTGATGCATCTCCTCCTGGCAATGATAGGTTGGCCACAACCCGAGATGGATCTGACTA CAGCGATGATGCCAGGGCGAAGAGTAGAAGCCCCGCAAGGGACCTTGATGATGATAGCCCCAAAGCTGACAATGGGCGTA GCCGCAGTGCTAGCCCTAGGGATGATGATAGGAGCCCCATTGAAGAAGATGATGACAACCACCGTCAATCTCCGTCACCT TAGAAAGTACTTCTCTTATAAATGAGCTCAGGCTGTGTTCCTGGATTTATCTTCTTTATTTATGAAACTCTGGTGTTTAT TTATAGTTATGACTTTTGAAGATTGGATTTATGTATGCTATTGTATTGATTTTGTTGGTTGCGCTTACATGCGTGGAGTC TAATTTGAACTGATGTGAGTTAAGAGATATTTGCTTTAAATTCTTTGAACTCCATTATAGGCTTTATGTCTTTCTTTTCC GCTAATTAGGTTGATAATTATTTATGTTCTTCAATTTTGTCAAGGAAAAACTTAGGTAGTTATTTGGGTACTCTTTATTA CGCCCAATTAAAAACTTACCTACCCACTATCTTAATATTTTTTGAGTAAAGCTATATGGCATGGGAAAATGGGCGACGAA GGTGACGACAAACTAATCAGACGGTTTAAATGAATTAAGTTGGAAAAAAACCAGAGTTGTTACATATTTTACTCACGGTG TGCAATTTGTGGATAGTTTGGGTCGTGCCACGCCCATATTTTTTAGTGTGGTTAATTACTACGCCCAATTAATACTCTTT ATCACACATTGAATTGCATGTTAATTGTTGCTTTCATTTTTGTACAACTCCACGTACAAGGGTAAAATATTGTGCAGTGT ACAATTAGAAATTGAGTGCATATGTTGTAAAATAGGGAAGGAGTAATCTTAAGGAAAATGTTGAGGGTGATGGTCAT
CDS sequence (LotjaGi1g1v0695900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCGTGATTATGCCTTTGTTGAATTTAGCGATCCTCGAGATGCTGATGATGCAAGATATAACTTGGATGGACGTGA TGTTGATGGAAGTCGTCTTATTGTTGAATTTGCAAAAGGGGTTCCCCGTGGTTCTCGTGAAGGGGGCGGGGGCCGGGACC GCGACCGGGAATATATGGGTCGTGGTCCACCTCCTGGATCTGGACGCTGCTTTAACTGTGGTATTGATGGCCACTGGGCT CGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTATAGATGTGGAGAGAGAGGTCATATAGAAAAGAACTGCAAGAA CAGTCCCAAAAAGTTGAGTCGACACCCTAGGAGTGATTCACGTTCACCAGTCAGGTCACGATCTCCTAGGCGTGGCAGGA GCCGGGATCGAAGTTACACCCCAGAGCGCAGCTACAGCCGATCAAGATCCCCAGTCAGAAGAGATCGAAGCCCTTTTCCT GAAGATCGATCAAGGAGTCCTCCCTCCAGGACAAGGAAGCATAGTCTATCTCCTGACCTAGACAGCCCACAGAAGAGAAG TGATGCATCTCCTCCTGGCAATGATAGGTTGGCCACAACCCGAGATGGATCTGACTACAGCGATGATGCCAGGGCGAAGA GTAGAAGCCCCGCAAGGGACCTTGATGATGATAGCCCCAAAGCTGACAATGGGCGTAGCCGCAGTGCTAGCCCTAGGGAT GATGATAGGAGCCCCATTGAAGAAGATGATGACAACCACCGTCAATCTCCGTCACCTTAG
Protein sequence (LotjaGi1g1v0695900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRDYAFVEFSDPRDADDARYNLDGRDVDGSRLIVEFAKGVPRGSREGGGGRDRDREYMGRGPPPGSGRCFNCGIDGHWA RDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRHPRSDSRSPVRSRSPRRGRSRDRSYTPERSYSRSRSPVRRDRSPFP EDRSRSPPSRTRKHSLSPDLDSPQKRSDASPPGNDRLATTRDGSDYSDDARAKSRSPARDLDDDSPKADNGRSRSASPRD DDRSPIEEDDDNHRQSPSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 40 | 40 | 9.627 | ||
| Gene3D | 1 | 60 | 60 | 1.2E-10 | ||
| Pfam | 2 | 33 | 32 | 1.6E-5 | ||
| SUPERFAMILY | 3 | 67 | 65 | 1.05E-12 | ||
| PANTHER | 3 | 205 | 203 | 3.2E-64 | – | |
| PANTHER | 3 | 205 | 203 | 3.2E-64 | – | |
| MobiDBLite | 39 | 68 | 30 | - | – | |
| MobiDBLite | 46 | 60 | 15 | - | – | |
| SUPERFAMILY | 60 | 108 | 49 | 1.21E-12 | ||
| Gene3D | 61 | 87 | 27 | 9.0E-7 | – | |
| ProSiteProfiles | 69 | 84 | 16 | 10.147 | ||
| SMART | 69 | 85 | 17 | 2.9E-4 | ||
| Pfam | 69 | 84 | 16 | 1.7E-6 | ||
| Gene3D | 88 | 134 | 47 | 2.1E-5 | – | |
| Pfam | 90 | 107 | 18 | 8.8E-5 | ||
| ProSiteProfiles | 91 | 107 | 17 | 10.625 | ||
| SMART | 91 | 107 | 17 | 0.0016 | ||
| MobiDBLite | 99 | 126 | 28 | - | – | |
| MobiDBLite | 99 | 259 | 161 | - | – | |
| MobiDBLite | 133 | 181 | 49 | - | – | |
| MobiDBLite | 201 | 259 | 59 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0695900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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