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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0695900 |
| Transcript ID | LotjaGi1g1v0695900.7 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine/serine-rich splicing factor, putative; TAIR: AT3G53500.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein; Swiss-Prot: sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32; TrEMBL-Plants: tr|I1NA32|I1NA32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0695900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126336357..126340814) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGTTTTGTCTAAATGATTGTTTACAAGTTGCAGCCCAGCCCATTTTGGCCCAATTCTTCATTCACAAAAAAATAAAC ATTATCCATTTAGAGATGCAGTGGTATAAATAGCGAAACTCATGTTGAGATGCATACGCATCTCGAGAAGGATTAGGTTT CATCAGCAGCAGCAGCAACAAACCACTCGCAGCAGGTAACTTTCTCTGCTTCCATTTCCCCCCTTTCGATTTCGCTTCCT TTTCAATCCGATTTGCACTTTCACTTCATCTGTTTCAATTCACCTGTGCTTCAATCTTATCAATTCCCATTTCGATTTCT CATCCAATTTGGATCTTGATTGTTGATATTGGATCTCGCATCTGATTTTACCCAATTATTCATCATCGATGAACACGATC GATTATTCGTTTGCTCTGATTTGATTTATGCGTCTCTGTTCAGCTTCTTCCATTGTCAATTATGCGATTTCCATGATTTA TTTTGCAGAGCTAGAAGAAGCTGAGAATGCCTCGTTATGATGATAAGCATGACAATACCCGCCTCTATGTGGGTCACTTG TCTTCAAGGACCAGGGAACGTGATCTCGAGAGAGCTTTCAGCAAGTATGGAAGGTAATCTAATCATTCCCTCACATGTAT AGAACACAAGTCTTAGTAACTGCATGCAAAGCTCCTCACTTTGGTTTGTTTTTGTATCTTCTGTGTTTGATACGTCACAC CGTGTTGGCTTATGTACCGATTTCATTTGTACGAGCCGGGAGGAACTCTTTTGTTCTCATATATTTTTAATCTAGACTAT TAGGCTATTAGCATGTTTGGATAATTTTTTATAGAATGAATTCTGACACCCAGAATCTCTCACGAGCTTCTCTCCATAAT TGATTTTGTTTTTCGAATTAGTTGTAGAAGGATTTTCAAACATGCCAAGTATTGTCTAGTCTTCTAGTTTGCCACGGTTG GGACAGTTTACCAATGGGAGATGGGAGATAAATTACTGATAATTTGGCATGGGGTACCTAAACTAAGGGGGTTATCATAA CATGCAGGTTGTTCCCAAGCTTCATTTTGTGCTTGGATTTATGTTGGTTATTGGTCATGTTATGTCTAGAATCCACTTTC CCACGGTGTCATGTTTTAACTTTAATGGCCTTGTTGAAGGTTTCTGGGGTTTTGGCTAAAACCTGGAGATCTGTGTTGGA AGGGTGGCCTTGGTGAAAATTCCCACGAATGTTGACTTTGGCGATTCTTTCTCTATTGTTATTGCATATTTTTATGGAAA TGGCAACAATCACATACTGGTGTTTAGTTCGTTTTTGAGGGGCGAAGTATCATACAGTTCCAGTAGTTAAGTAATGATGG CCTTACTGTTTCTGGAAACCATTTACGCAGAGTTCGAGGTGTGGATATGAAGCATAATTTCGCCTTTGTTGTAAGTTTCA CCCTTTCTTTGTCTTCTTTTATTTATTTTTTTGTTGGATTTTATTGCTCCTCATGCCTTTGATCAAATGTGGCTTCTAGT ATCTGCTTGGGGGAATTAAGTTGTAGATCATGGTAAGATTTTTGTGTTACTTTCCTGGTTTGTTCCTTACATCTTTTGAA CAGGAATTTAGCGATCCTCGAGATGCTGATGATGCAAGATATAACCTGGATGGTCGTGATGTTGAAGGAAGTCGTATTGT TGTGGAATTTGCCAAAGGGGTAAGACATGCTTTCATACATGTTTTCTGTACATAAGAAGGGTTGCTTCCTAAACAGATGT TTTGCTTTATATTTCTGTCTTAATCTGGAAATTCTTTCTCAACGTACTTGTAGACATTGGTCTTGGATTGTATTTTTGAA TATAGCATTGCCAAGGCAGTTGGTTTTTTTTTTTTATCATTTCTATCGCATCAGACATTGAGCTTTTATTTCTCCGAAGC TCCTCAATTCTCACATAAAGTGTTCTCATTCGCTGTTTTCATAACTTTTTAACACATCTATTATCTGTTCATATGTTTGA ACAATTATTTTATGGTGGCTGTCTCCTTTTTTGCTTCATTATACATTTATTACAGCACCAACCACTTGCTTCATTGTGTT TGCTTATGGACCCTGGATTCTCTGATATTACTGTTGTTCCCTTACTTGTGAACAGTCTTTGTTTGCTTTTCATTGCATGT TAATTTTTATTTTAGTCTGATGATATGTAATTAATCAGGGTCCTCGCGGTAACCGCGAATACTTGGGTCGAGGTCCACCT CCTGGATCTGGACGCTGCTTCAATTGTGGCCTTGATGGTCATTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAACAA GTGCTACCGATGTGGGGATAGGGGTCATGTAGAAAGGAACTGCAAGAACAGTCCCAAAAAAACGAGGTAGGCTGTATTGC AGTGTTTCCTAACTCCTGCATTGTTATTGAATTTTTCTTATAATGGTTGTTGCTTTCTGATGGAGTTTGTGAGATCTAAT CTAGTGATGTCAATTTGACTTGTTATAGTGGCAGACGTGGAAGGAGTTATTCTCGTTCACCGGTCAGGTCTCGTTCCCCT CGTCGTGACAGAAGTCGTGATCGAAGTTATAGCCGAGACCGCAGCTACAGGTATGCAGTCATTGGGCAAGGTTTCAATAG AATTAGTTGTTTGCTGTTGTCTCAGTATACATTATTGTATTGTGAAATCTCAGTAGACATTAGTGTATTGTCAATTTTTG CTTGTAAGCTGAACTTTAGTGCCATTGTTTTTGCCAGCCGATCAAGATCCCCTATCGGTAGAGAAAAAAGCCCACTTCGT GATGGATCACTCAGTCCTCGCAACAGAAGCCCTGTGCCTAAAAGTAGCCCTCAGCCCTCCAAGACCAGGAAGCATAGTTT ATCACCTGACCGAGCTAGCCCACAGAAGAGAGGTGACTCCTCTCCTGCTGAGGATGGGTTGGTCACCCAGCAAGATGGGT CTGACTACAGCAATGGCCATAGAGATAGGAGCAGAAGCCCTGCTAGCCCTGTAAGGGACCGTGAAGGTAGCCTTAAAGCT AATGGTCGCAGTCAGAGCCCTGGCCGAAGTCCAAGGGATGATGACAGGAGCCCCATTGATGATGATGATGGCAACCACCG CCGCTTGCCAAGAGGTAGTGAGTCCCCTTGAATTGTATTATTCTGAGAAATGAACTCAGGAAGCTGTGGAGTGTTTTATC TGATTTGGTTACCGAATGCACTTCATCGTAAATTATGTGTCAATTATTCTCGCTCAAACAATTGCAAAACTGTATATCTG TTATTCAGATTTAGTGTTTGTTGTGCTGTGTGCGGCATGACAAGAATATAGCTTTGAGGACAAATATTTTGAACCAATGC ATGCGAATTGTTATGAGATTTAAAATCCAGCATGTTGTGTCCTTTCTTTAAGTTCAAATGTTGAAGCCTTTTTTTAATTA TCTCGCACAATTTGGTAATGCATGTTAGGAATTAATGTGAATCAATCTGAAACTGACGTTTGACATGTTTAGGCTTTAGG GTGTTTTTTTAGTGTTACTTTGGTGAAGGTTTAAGTACGACTTCCAAAACCCCAATATAAAGTTGGCACAACAAAGCATT TCTAACTATTGCATAATCTTTCCACGGATTCTCTATTGCACTTCTATATTTTTTTCCTTTTGTCTTGTGCGCCTTTTCCT CCTTAACCGAAAGCCTTATGCTTTGTTTGGTTTACCGGTGTTTGGTTTAGCAGAGAAAAAGAGAAGAAGTAGAAGAGGGA ACATGAGTGGAAAAAAGAACATATTTTTATTGTGTTTGATATACTAAAAACATAATAGAGAAAGATAGTCATAAAGGGTG GGTCCACCCATGGACCAGAGGGTAACTTTGTTTTTTCCCTTTACCTTTCCCTTTACCCTTTTCCTCTTCTTCCTGGCAGC CTCTGTTCCTCTTCCCTTCATCTTTATCTTAGCAAATTCCAGCAAAGGCTTCATTTTGCCACAATCGAAAAGCTCCACCA CATTTTCAACTCAGGGGATGATTCAATGAGGTGATTTGTGTAGGGGCTCGTCTTCACTGCCTCCAGCTTGCGTCATTCGC CATCACAGAACGCTATCAGATTGGAGCCGCCGTCGAAGAGATCAAGGCGACATGCAAACTGCCACCAGATTGGAGCCGTC GTCGACACCGTCAGATCGAATCCGCTGTCGCCGCCATCATTCTCCATCATCGCCTCCATGACCTAGATCTAGGGTTTCTC ACCTTCATGGGGTTCTGCTAAAGCTTCGAAATTTGTTCAGCAAATGGGTTGGTAGGTCGCCATGCTTAAGCAATTTCTCA GTAAGATGAACCTGTTCGTGAGCAAGCTGGGCCTTATGTAAAGAGGCGAACTTTGGTTGAACTTGTTGATTTTGTGTCTT CCTGTTGTGTCTGGTTCAAGTTCAGCTTTTTTTTTTTCGAGTTTTTCATCTGTTTTTA
CDS sequence (LotjaGi1g1v0695900.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCGTTATGATGATAAGCATGACAATACCCGCCTCTATGTGGGTCACTTGTCTTCAAGGACCAGGGAACGTGATCT CGAGAGAGCTTTCAGCAAGTATGGAAGAGTTCGAGGTGTGGATATGAAGCATAATTTCGCCTTTGTTGAATTTAGCGATC CTCGAGATGCTGATGATGCAAGATATAACCTGGATGGTCGTGATGTTGAAGGAAGTCGTATTGTTGTGGAATTTGCCAAA GGGGGTCCTCGCGGTAACCGCGAATACTTGGGTCGAGGTCCACCTCCTGGATCTGGACGCTGCTTCAATTGTGGCCTTGA TGGTCATTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGCTACCGATGTGGGGATAGGGGTCATGTAGAAA GGAACTGCAAGAACAGTCCCAAAAAAACGAGTGGCAGACGTGGAAGGAGTTATTCTCGTTCACCGGTCAGGTCTCGTTCC CCTCGTCGTGACAGAAGTCGTGATCGAAGTTATAGCCGAGACCGCAGCTACAGCCGATCAAGATCCCCTATCGGTAGAGA AAAAAGCCCACTTCGTGATGGATCACTCAGTCCTCGCAACAGAAGCCCTGTGCCTAAAAGTAGCCCTCAGCCCTCCAAGA CCAGGAAGCATAGTTTATCACCTGACCGAGCTAGCCCACAGAAGAGAGGTGACTCCTCTCCTGCTGAGGATGGGTTGGTC ACCCAGCAAGATGGGTCTGACTACAGCAATGGCCATAGAGATAGGAGCAGAAGCCCTGCTAGCCCTGTAAGGGACCGTGA AGGTAGCCTTAAAGCTAATGGTCGCAGTCAGAGCCCTGGCCGAAGTCCAAGGGATGATGACAGGAGCCCCATTGATGATG ATGATGGCAACCACCGCCGCTTGCCAAGAGGTAGTGAGTCCCCTTGA
Protein sequence (LotjaGi1g1v0695900.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPRYDDKHDNTRLYVGHLSSRTRERDLERAFSKYGRVRGVDMKHNFAFVEFSDPRDADDARYNLDGRDVEGSRIVVEFAK GGPRGNREYLGRGPPPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGDRGHVERNCKNSPKKTSGRRGRSYSRSPVRSRS PRRDRSRDRSYSRDRSYSRSRSPIGREKSPLRDGSLSPRNRSPVPKSSPQPSKTRKHSLSPDRASPQKRGDSSPAEDGLV TQQDGSDYSNGHRDRSRSPASPVRDREGSLKANGRSQSPGRSPRDDDRSPIDDDDGNHRRLPRGSESP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 231 | 231 | 5.8E-91 | – | |
| PANTHER | 1 | 231 | 231 | 5.8E-91 | – | |
| Gene3D | 2 | 89 | 88 | 1.5E-22 | ||
| SUPERFAMILY | 7 | 100 | 94 | 8.73E-24 | ||
| ProSiteProfiles | 11 | 81 | 71 | 16.944 | ||
| SMART | 12 | 77 | 66 | 1.3E-18 | ||
| Pfam | 13 | 74 | 62 | 6.8E-15 | ||
| SUPERFAMILY | 91 | 139 | 49 | 3.32E-12 | ||
| Gene3D | 95 | 153 | 59 | 3.2E-13 | – | |
| ProSiteProfiles | 100 | 115 | 16 | 10.18 | ||
| Pfam | 100 | 115 | 16 | 1.2E-5 | ||
| SMART | 100 | 116 | 17 | 1.3E-4 | ||
| Pfam | 121 | 138 | 18 | 6.0E-4 | ||
| ProSiteProfiles | 122 | 138 | 17 | 10.444 | ||
| SMART | 122 | 138 | 17 | 0.004 | ||
| MobiDBLite | 130 | 308 | 179 | - | – | |
| MobiDBLite | 157 | 194 | 38 | - | – | |
| MobiDBLite | 200 | 215 | 16 | - | – | |
| MobiDBLite | 248 | 271 | 24 | - | – | |
| MobiDBLite | 280 | 308 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0695900.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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