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LotjaGi1g1v0695900.8

Overview

Field Value
Gene ID LotjaGi1g1v0695900
Transcript ID LotjaGi1g1v0695900.8
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description Arginine/serine-rich splicing factor, putative; TAIR: AT3G53500.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein; Swiss-Prot: sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32; TrEMBL-Plants: tr|I1JPG6|I1JPG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0695900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:126337174..126340680) extracted from Lotus japonicus Gifu genome v1.2.

TACGCATCTCGAGAAGGATTAGGTTTCATCAGCAGCAGCAGCAACAAACCACTCGCAGCAGGTAACTTTCTCTGCTTCCA TTTCCCCCCTTTCGATTTCGCTTCCTTTTCAATCCGATTTGCACTTTCACTTCATCTGTTTCAATTCACCTGTGCTTCAA TCTTATCAATTCCCATTTCGATTTCTCATCCAATTTGGATCTTGATTGTTGATATTGGATCTCGCATCTGATTTTACCCA ATTATTCATCATCGATGAACACGATCGATTATTCGTTTGCTCTGATTTGATTTATGCGTCTCTGTTCAGCTTCTTCCATT GTCAATTATGCGATTTCCATGATTTATTTTGCAGAGCTAGAAGAAGCTGAGAATGCCTCGTTATGATGATAAGCATGACA ATACCCGCCTCTATGTGGGTCACTTGTCTTCAAGGACCAGGGAACGTGATCTCGAGAGAGCTTTCAGCAAGTATGGAAGG TAATCTAATCATTCCCTCACATGTATAGAACACAAGTCTTAGTAACTGCATGCAAAGCTCCTCACTTTGGTTTGTTTTTG TATCTTCTGTGTTTGATACGTCACACCGTGTTGGCTTATGTACCGATTTCATTTGTACGAGCCGGGAGGAACTCTTTTGT TCTCATATATTTTTAATCTAGACTATTAGGCTATTAGCATGTTTGGATAATTTTTTATAGAATGAATTCTGACACCCAGA ATCTCTCACGAGCTTCTCTCCATAATTGATTTTGTTTTTCGAATTAGTTGTAGAAGGATTTTCAAACATGCCAAGTATTG TCTAGTCTTCTAGTTTGCCACGGTTGGGACAGTTTACCAATGGGAGATGGGAGATAAATTACTGATAATTTGGCATGGGG TACCTAAACTAAGGGGGTTATCATAACATGCAGGTTGTTCCCAAGCTTCATTTTGTGCTTGGATTTATGTTGGTTATTGG TCATGTTATGTCTAGAATCCACTTTCCCACGGTGTCATGTTTTAACTTTAATGGCCTTGTTGAAGGTTTCTGGGGTTTTG GCTAAAACCTGGAGATCTGTGTTGGAAGGGTGGCCTTGGTGAAAATTCCCACGAATGTTGACTTTGGCGATTCTTTCTCT ATTGTTATTGCATATTTTTATGGAAATGGCAACAATCACATACTGGTGTTTAGTTCGTTTTTGAGGGGCGAAGTATCATA CAGTTCCAGTAGTTAAGTAATGATGGCCTTACTGTTTCTGGAAACCATTTACGCAGAGTTCGAGGTGTGGATATGAAGCA TAATTTCGCCTTTGTTGTAAGTTTCACCCTTTCTTTGTCTTCTTTTATTTATTTTTTTGTTGGATTTTATTGCTCCTCAT GCCTTTGATCAAATGTGGCTTCTAGTATCTGCTTGGGGGAATTAAGTTGTAGATCATGGTAAGATTTTTGTGTTACTTTC CTGGTTTGTTCCTTACATCTTTTGAACAGGAATTTAGCGATCCTCGAGATGCTGATGATGCAAGATATAACCTGGATGGT CGTGATGTTGAAGGAAGTCGTATTGTTGTGGAATTTGCCAAAGGGGTAAGACATGCTTTCATACATGTTTTCTGTACATA AGAAGGGTTGCTTCCTAAACAGATGTTTTGCTTTATATTTCTGTCTTAATCTGGAAATTCTTTCTCAACGTACTTGTAGA CATTGGTCTTGGATTGTATTTTTGAATATAGCATTGCCAAGGCAGTTGGTTTTTTTTTTTTATCATTTCTATCGCATCAG ACATTGAGCTTTTATTTCTCCGAAGCTCCTCAATTCTCACATAAAGTGTTCTCATTCGCTGTTTTCATAACTTTTTAACA CATCTATTATCTGTTCATATGTTTGAACAATTATTTTATGGTGGCTGTCTCCTTTTTTGCTTCATTATACATTTATTACA GCACCAACCACTTGCTTCATTGTGTTTGCTTATGGACCCTGGATTCTCTGATATTACTGTTGTTCCCTTACTTGTGAACA GTCTTTGTTTGCTTTTCATTGCATGTTAATTTTTATTTTAGTCTGATGATATGTAATTAATCAGGGTCCTCGCGGTAACC GCGAATACTTGGGTCGAGGTCCACCTCCTGGATCTGGACGCTGCTTCAATTGTGGCCTTGATGGTCATTGGGCCCGAGAT TGCAAAGCTGGGGATTGGAAGAACAAGTGCTACCGATGTGGGGATAGGGGTCATGTAGAAAGGAACTGCAAGAACAGTCC CAAAAAAACGAGGTAGGCTGTATTGCAGTGTTTCCTAACTCCTGCATTGTTATTGAATTTTTCTTATAATGGTTGTTGCT TTCTGATGGAGTTTGTGAGATCTAATCTAGTGATGTCAATTTGACTTGTTATAGTGGCAGACGTGGAAGGAGTTATTCTC GTTCACCGGTCAGGTCTCGTTCCCCTCGTCGTGACAGAAGTCGTGATCGAAGTTATAGCCGAGACCGCAGCTACAGGTAT GCAGTCATTGGGCAAGGTTTCAATAGAATTAGTTGTTTGCTGTTGTCTCAGTATACATTATTGTATTGTGAAATCTCAGT AGACATTAGTGTATTGTCAATTTTTGCTTGTAAGCTGAACTTTAGTGCCATTGTTTTTGCCAGCCGATCAAGATCCCCTA TCGGTAGAGAAAAAAGCCCACTTCGTGATGGATCACTCAGTCCTCGCAACAGAAGCCCTGTGCCTAAAAGTAGCCCTCAG CCCTCCAAGACCAGGAAGCATAGTTTATCACCTGACCGAGCTAGCCCACAGAAGAGAGGTGACTCCTCTCCTGCTGAGGA TGGGTTGGTCACCCAGCAAGATGGGTCTGACTACAGCAATGGCCATAGAGATAGGAGCAGAAGCCCTGCTAGCCCTGTAA GGGACCGTGAAGGTAGCCTTAAAGCTAATGGTCGCAGTCAGAGCCCTGGCCGAAGTCCAAGGGATGATGACAGGAGCCCC ATTGATGATGATGATGGCAACCACCGCCGCTTGCCAAGAGGTAGTGAGTCCCCTTGAATTGTATTATTCTGAGAAATGAA CTCAGGAAGCTGTGGAGTGTTTTATCTGATTTGGTTACCGAATGCACTTCATCGTAAATTATGTGTCAATTATTCTCGCT CAAACAATTGCAAAACTGTATATCTGTTATTCAGATTTAGTGTTTGTTGTGCTGTGTGCGGCATGACAAGAATATAGCTT TGAGGACAAATATTTTGAACCAATGCATGCGAATTGTTATGAGATTTAAAATCCAGCATGTTGTGTCCTTTCTTTAAGTT CAAATGTTGAAGCCTTTTTTTAATTATCTCGCACAATTTGGTAATGCATGTTAGGAATTAATGTGAATCAATCTGAAACT GACGTTTGACATGTTTAGGCTTTAGGGTGTTTTTTTAGTGTTACTTTGGTGAAGGTTTAAGTACGACTTCCAAAACCCCA ATATAAAGTTGGCACAACAAAGCATTTCTAACTATTGCATAATCTTTCCACGGATTCTCTATTGCAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0695900.8) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTAAGATTTTTGTGTTACTTTCCTGGTTTGTTCCTTACATCTTTTGAACAGGAATTTAGCGATCCTCGAGATGCTGA TGATGCAAGATATAACCTGGATGGTCGTGATGTTGAAGGAAGTCGTATTGTTGTGGAATTTGCCAAAGGGGGTCCTCGCG GTAACCGCGAATACTTGGGTCGAGGTCCACCTCCTGGATCTGGACGCTGCTTCAATTGTGGCCTTGATGGTCATTGGGCC CGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGCTACCGATGTGGGGATAGGGGTCATGTAGAAAGGAACTGCAAGAA CAGTCCCAAAAAAACGAGTGGCAGACGTGGAAGGAGTTATTCTCGTTCACCGGTCAGGTCTCGTTCCCCTCGTCGTGACA GAAGTCGTGATCGAAGTTATAGCCGAGACCGCAGCTACAGCCGATCAAGATCCCCTATCGGTAGAGAAAAAAGCCCACTT CGTGATGGATCACTCAGTCCTCGCAACAGAAGCCCTGTGCCTAAAAGTAGCCCTCAGCCCTCCAAGACCAGGAAGCATAG TTTATCACCTGACCGAGCTAGCCCACAGAAGAGAGGTGACTCCTCTCCTGCTGAGGATGGGTTGGTCACCCAGCAAGATG GGTCTGACTACAGCAATGGCCATAGAGATAGGAGCAGAAGCCCTGCTAGCCCTGTAAGGGACCGTGAAGGTAGCCTTAAA GCTAATGGTCGCAGTCAGAGCCCTGGCCGAAGTCCAAGGGATGATGACAGGAGCCCCATTGATGATGATGATGGCAACCA CCGCCGCTTGCCAAGAGGTAGTGAGTCCCCTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0695900.8) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVRFLCYFPGLFLTSFEQEFSDPRDADDARYNLDGRDVEGSRIVVEFAKGGPRGNREYLGRGPPPGSGRCFNCGLDGHWA RDCKAGDWKNKCYRCGDRGHVERNCKNSPKKTSGRRGRSYSRSPVRSRSPRRDRSRDRSYSRDRSYSRSRSPIGREKSPL RDGSLSPRNRSPVPKSSPQPSKTRKHSLSPDRASPQKRGDSSPAEDGLVTQQDGSDYSNGHRDRSRSPASPVRDREGSLK ANGRSQSPGRSPRDDDRSPIDDDDGNHRRLPRGSESP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF54928
19 69 51 8.9E-7
IPR035979
PANTHER
PTHR23147:SF108
19 200 182 8.6E-64 –
PANTHER
PTHR23147
19 200 182 8.6E-64 –
SUPERFAMILY
SSF57756
60 108 49 2.58E-12
IPR036875
Gene3D
G3DSA:4.10.60.10
64 122 59 2.7E-13 –
SMART
SM00343
69 85 17 1.3E-4
IPR001878
ProSiteProfiles
PS50158
69 84 16 10.18
IPR001878
Pfam
PF00098
69 84 16 1.0E-5
IPR001878
Pfam
PF00098
90 107 18 5.3E-4
IPR001878
ProSiteProfiles
PS50158
91 107 17 10.444
IPR001878
SMART
SM00343
91 107 17 0.004
IPR001878
MobiDBLite
mobidb-lite
103 277 175 - –
MobiDBLite
mobidb-lite
126 163 38 - –
MobiDBLite
mobidb-lite
169 184 16 - –
MobiDBLite
mobidb-lite
217 240 24 - –
MobiDBLite
mobidb-lite
249 277 29 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0695900.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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