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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0743500 |
| Transcript ID | LotjaGi1g1v0743500.6 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carbon catabolite repressor 4-like protein; TAIR: AT3G58580.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q9M2F8|CCR4B_ARATH Carbon catabolite repressor protein 4 homolog 2; TrEMBL-Plants: tr|I1JQF1|I1JQF1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0743500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131707283..131712481) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTGAGCGTGCTGCGTGTGCACCTTCCCTCTGACATTCCTATTGTTGGCTGTGAGCTCACGCCTTACGTGCTCCTCCG CCGGCCTGACAAGACTGTTACCACCGATGATGCTCTCGAAACTGCCCCTCTAGACGGCCATTTCTTGCGCTACAAGTGGT GCGTGCTGTTCCATTTACTCCCTCTTCCTATTTGAATTTTGAATTTTGTTTGCGAATGTTGAAAATGGTTCCTGCCTATC ATTTTTTTATCGTTGTGCATAATGGGTATTTAAGCTTCAATATGTAGTTCTTGGGAGTTAATCAGTTATGCTAGTTTGTT ACTATTTGAAAATTGGAAGAGTATGAAGTGAAGTGTAAATGCTCATATGTTTAGTTTTGGTTTAGTAGAAGGCATAATAT AGTTTATCCCATAGTTATCGATAGCGCGCGATAACGGCGCTTCGCGCCAAAATCCCGCTATTCCCGGCCATCCCTTGTGC CATCCCTTGTATGGGATTTCATTTTTGGGGGTCATCCGCGACATGCCGCAATCCGCAATTGACTACTATGGTTTATCCAC CATGTTAGCTTATTACTTTTTTCTTCACTCCTGTGGCTAATGCATTTGTATCAAATAATCCAAATAGCAACACTTGTTTC ATTCCTCTTTCCTTGATGTTAATTTTGTTTGCGGTGCTAAAAAAATTTAAGGATAGTGAAAGCTCGTGTAACACGTTGTG AATTGACTAAAGTAATTGATTTTTTTAAGTGCTTAGAGGATGCCGTTGCAGTGTTTTATTAAGGAAAAAGTATCTCTTGA TTGTCTAATGTCTGGTGATGATCACTAGGCGACAAAGGATTATAGAATGTGGATTAATACTTGCACATTGTATAATTTGT TTCCTTCTACTTTACTTTTATTTGTAAATTAATTTGAATATTCATTATCATCAATTCTTGTGATAATTCTAGTGCTGGAC TTCATTATGAACTGATTTATTTCTTGTTGATAACTTTATCCTCGCATTCAAGTCACAGTCTTCTCCTTAGTGGTTCCGAC CTGCAGAATTTTTAATTCACTTATATGGAAATCCCAATTTGTAATGTTATAACCAGTGTTAGCGGATTTTTGGCTAATCG CGACGCCGCTATTGCCCACTATAGCCCGCTATTCGCCGCTAAATAGCGGCCGAATTAGCGGATTTTTGGCTCACCGCGAT GGTCCGCGTTCGCGATTTGACAACACTGGTTATAACATATTCTCAGTTCTGAATAAATCACATGACATTTAAATTTTGGC TATAGACTTCAACTGCAGGGTGTGGAATTTATATTTTCTTTCACATATGTCTTTATGGTGTGACGATTGTATATATAAAA TATGTGAGATTAGTCATTAGTTCACCTGAAGTTCATGAGTGTTAGTTAAAATAACATATAGATTCCATCAATTCCAAAAC AAGATTAGCAATCCTAGATTTTCTGTTAGCGATGGGACGTCATCTCGATTGGCGTCTTGTGCTGATCATAAGAATCTTCA ATACTCTGAAGTATCTAGTCCAGTTATTAATGTTAGTGGAATTTTTTATGGGATATGTTTTGAATGTTATCAGCTTTTGT CGTTTGTGTAATTTAGACATTGATGGAATTATTGAAGATTATGCCCTTATGGATATTTGGACCAATGTTGCGAGAATTTC CTTAGTATCACAAAATTGATTGCTTAAACAGTTGCTTGCGATTATTTTATTATGTTAAATACCAATTTGATCCCAAATAT ACTGCCTTAAATCTGATTTCCCTATTCATCTGATCAAAAATTTAGAACTTTATGTATTTACTATTTGACACAATCATTGG GTCCCCCTTTTTGTCAGGTATCGTGTACAAAGTGATAAAAAGGTTGCGGTTTGTAGTGTACATCCATCCGAGCAGGCCAC ACTGCAGTGCCTAGGTTGTGTTAAGGCTAAAATACCTGTTTCCAAAAGTTACCATTGCACTCCAAAGTGTTTTTCAGATG CATGGCAGCATCATCGTGTTTTGCATGACCGTGCTGCTAGTGCAGTTAATGAAAATGGAAATGAGGAAGAGGAAGTATTT GGGCGATTTAATAATGCTGGGTCTGGGTCAATAAATACCAGCTTATCTGCCTCTGCATCAAGTGGTAGCTTGACAAATGG GTCAGCACCTCTGTATCCAGCAGCTGTTACACAACGAAGTGGTGGTGAAACTTGGTTTGAAGTTGGACGGTCTAAGACAT ATACCCCAACAGCTGATGACATCGGTCATGTCCTTAAATTTGAGTGTGTTGTAGTTGATGCAGAGACAAAACTTCCTGTG GGACATGCAAACACTATACTAACTTCTCGTGTTATTCCTGCTCCCTCTCCTAGTCCACGCCGACTGATACCTGTTGACGG GATGGGGAATGTAGATGCAGATGGGCGTGTATCATCTTCGGGAACTTTTACTGTTTTGTCATACAATATATTGTCTGATT CATATGCTTCAAGTGATCTATACAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGGAGGCAAAATTTGTTGCGC GAAATAGTTGGTTACCGTGCTGATATCATTTGTCTTCAGGAGGTACGGTGCATAAATATGTCTTTTGGCTTTGGGTTTTG TTGTGAAGAAAGTTAATAACTGTTATACAACTCATCTCATTTTCAAAGTTTCTTTAGACTAGTGTTGAATAAGAATTCTA TTTCACTGTCCTAAAGTCTTACTTAATCTTCAATAGCAGATGGTTTTTGTAAAAGCTTGATTATGGACCCGGGGCGCAAA GTAATGCTGCCACTGGTAGCTCATTCTAATTTTAATATTTTATAACTTGGATGGCTATCAGTTGTTAATGAACTTAAATA AACGATACCTTAATTTCTATGTTTTTATGTTGGTATTTTTCGAGGGATGTGGTATTGTGGTATCATGGTCCAGTGTATCC TAACCATTTTGAGATAGAATCTATTTCTTCTCCACTTACCACTGGATCCCTTAGAATTACACAATTGCATATTATATTCT AATGGTTTCTCTATCAGCTAACATCCATTCTGTTTCCCTCCAGGTTCAAAATGACCACTATGAAGAGTTTTTCGCTCCTG AGCTGGACAAACATGGCTATAATGGTCTTTACAAAAGAAAAACAAATGAGGTTGTTACACTAGTCTGCTATCTTGTGATC GTAAACTCATAATTTGTAAAACTCTATTGAAACCTCTTTTTGGCGGGCTCACAGGTTTTCAATGGCAATATTAATACAAT TGATGGTTGTGCTACATTTTTCCGAAGAGACAGATTTTCACATGTGAAGAAATATGAGGTTGGAAATTGTTTTTATGTGT ATAGTGGTACTCTTTAGTTTGTGCATAACATATAATGGTGTCTCCTTGCATGCAGGTTGAATTTAATAAGGCTGCACAGT CTTTAACAGATGCCATGATTCCAACCACTCAGAAGAAATCTGCTTTGAATCGACTGGTTAAGGTGATTTATTGCACAAAA TATTGCATATTACTTTTGCCTTCCAAAATATATGGTCGTCTCTTGTGTATCTTGTGCTTACTGATTTTAATTTATGTTCT TAGGATAATGTTGCGCTAATAGTGGTTTTAGAAGCAAAAGTTAATAACCAGCCTGTTGATAATCCAGGAAAAAGACAGCT TCTTTGTGTGGTAAGCTCTTTTATTTTGCTTTTATTTGTTACTGTTAGGTCTTGTGTGCTCATGCCTTCAAGGCCTGCGA TGTGTATTTTATATCTACACTTATGCCTTTTATTTTATCATTCCTCATTTCCCCGATTGTAGTTGCATTGTATGTTTAAT GATAGGGCTTTTTCAGCCTTGTGCTTCATGTATGCTCCTTTCTTTAGAAGGCTTGTTTTTCTCAAGCAGAATTAGGTTTA GAAGATTTTCCATGATGACTAATTCTAGCTTTATTATTTTGCTGATGGTGGTTGGTCTTGTGTAAGAAATCTAGATTGTT AAACTTCTGAGGTGTTCTATATTTTCATAAATTAACTCTAAAATCTCACGCTGAAACAACTGAGCTATATGTGGTTTTAA GTTTTTTTTGTAAACTTTATTTGGATCTCTCAGAAAATTTATTATATTTCTTTGTTTCCCCTGCCTTTTTCTTTTGTTGT TGTAGGTCAAAACTACTTCTTTAGTAATATAACTATCTAAACTAACTCATATATTGCTTGTGGACATCAGGCGAATACAC ATGTAAATGTCCACCAAGATTTAAAGGATGTCAAACTCTGGCAGGTTAGTCATTTCTTTTGCTTCCTCACATTTATTGGA ATGTTTATTTTGATCATTACAGTTATAAATTTCCTTCCATTTTTAGGTGCACACTCTCCTGAAAGGATTGGAGAAAATTG CTGCAAGTGCAGATATTCCAATGTTAGTTTGTGGGGACTTCAATTCAAATCCGGGAAGGTTCGATTACTTTTATTTTTGT ATAATTTTGGAAACTTGTGTTCGGCATGGGTCTTTTGTTAGTATCAGCAAATTGTTTCTTATGGTTATATTCTCACTTTG TTGCAGTGCTCCTCATGCACTTCTTGCTATGGGTAAGGTTGATCCATCACATCCTGATTTAGCGATTGACCCACTTAGCA TATTGCGTCCTCACAGCAAGTTAGTTCACCAGTTGCCTCTGGTAATGTATTGCAGCCATTGAATGGAATAACTTATCTAA AATTGTCTACTGTCTCCACTTCTCCCACCTTTATTTTGCTCCTTAGTTTTTGTTCCTGATTATAGTTTATGGGTTGTATT ACTTCAATTTTAGGTCAGTGCTTATTCTTCATTTGCAAGGACAATTGGTCTTGGATATGAGCAGCATAAGCGAAGACTTG ATAGTGCAACAAATGAACCTTTATTCACAAATGTCACAAGGGATTTTATTGGCGCTCTTGACTACATATTTTACACAGGT GAGCTATCTTGCCATGTTACCTCATTTCTAAATTTAACATCACTGTCGCGTATTTATGTTGTGTTCCTTTGCTTTTCTTT TTTGTTTCAGCTGATTCATTGGTTGTGGAGTCATTATTGGAGCTATTGGATGAGGAGAGTTTGAGGAAAGACACAGCACT CCCTTCTCCTGAATGGTCATCAGATCATATAGCTCTCTTAGCAGAGTTTCGCTGCTGCAAGAATAGATCTAGGCGTTGA
CDS sequence (LotjaGi1g1v0743500.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGAGCGTGCTGCGTGTGCACCTTCCCTCTGACATTCCTATTGTTGGCTGTGAGCTCACGCCTTACGTGCTCCTCCG CCGGCCTGACAAGACTGTTACCACCGATGATGCTCTCGAAACTGCCCCTCTAGACGGCCATTTCTTGCGCTACAAGTGGT ATCGTGTACAAAGTGATAAAAAGGTTGCGGTTTGTAGTGTACATCCATCCGAGCAGGCCACACTGCAGTGCCTAGGTTGT GTTAAGGCTAAAATACCTGTTTCCAAAAGTTACCATTGCACTCCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGT TTTGCATGACCGTGCTGCTAGTGCAGTTAATGAAAATGGAAATGAGGAAGAGGAAGTATTTGGGCGATTTAATAATGCTG GGTCTGGGTCAATAAATACCAGCTTATCTGCCTCTGCATCAAGTGGTAGCTTGACAAATGGGTCAGCACCTCTGTATCCA GCAGCTGTTACACAACGAAGTGGTGGTGAAACTTGGTTTGAAGTTGGACGGTCTAAGACATATACCCCAACAGCTGATGA CATCGGTCATGTCCTTAAATTTGAGTGTGTTGTAGTTGATGCAGAGACAAAACTTCCTGTGGGACATGCAAACACTATAC TAACTTCTCGTGTTATTCCTGCTCCCTCTCCTAGTCCACGCCGACTGATACCTGTTGACGGGATGGGGAATGTAGATGCA GATGGGCGTGTATCATCTTCGGGAACTTTTACTGTTTTGTCATACAATATATTGTCTGATTCATATGCTTCAAGTGATCT ATACAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGGAGGCAAAATTTGTTGCGCGAAATAGTTGGTTACCGTG CTGATATCATTTGTCTTCAGGAGGTTCAAAATGACCACTATGAAGAGTTTTTCGCTCCTGAGCTGGACAAACATGGCTAT AATGGTCTTTACAAAAGAAAAACAAATGAGGTTTTCAATGGCAATATTAATACAATTGATGGTTGTGCTACATTTTTCCG AAGAGACAGATTTTCACATGTGAAGAAATATGAGGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCCATGATTC CAACCACTCAGAAGAAATCTGCTTTGAATCGACTGGTTAAGGATAATGTTGCGCTAATAGTGGTTTTAGAAGCAAAAGTT AATAACCAGCCTGTTGATAATCCAGGAAAAAGACAGCTTCTTTGTGTGGCGAATACACATGTAAATGTCCACCAAGATTT AAAGGATGTCAAACTCTGGCAGGTGCACACTCTCCTGAAAGGATTGGAGAAAATTGCTGCAAGTGCAGATATTCCAATGT TAGTTTGTGGGGACTTCAATTCAAATCCGGGAAGTGCTCCTCATGCACTTCTTGCTATGGGTAAGGTTGATCCATCACAT CCTGATTTAGCGATTGACCCACTTAGCATATTGCGTCCTCACAGCAAGTTAGTTCACCAGTTGCCTCTGGTCAGTGCTTA TTCTTCATTTGCAAGGACAATTGGTCTTGGATATGAGCAGCATAAGCGAAGACTTGATAGTGCAACAAATGAACCTTTAT TCACAAATGTCACAAGGGATTTTATTGGCGCTCTTGACTACATATTTTACACAGCTGATTCATTGGTTGTGGAGTCATTA TTGGAGCTATTGGATGAGGAGAGTTTGAGGAAAGACACAGCACTCCCTTCTCCTGAATGGTCATCAGATCATATAGCTCT CTTAGCAGAGTTTCGCTGCTGCAAGAATAGATCTAGGCGTTGA
Protein sequence (LotjaGi1g1v0743500.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDALETAPLDGHFLRYKWYRVQSDKKVAVCSVHPSEQATLQCLGC VKAKIPVSKSYHCTPKCFSDAWQHHRVLHDRAASAVNENGNEEEEVFGRFNNAGSGSINTSLSASASSGSLTNGSAPLYP AAVTQRSGGETWFEVGRSKTYTPTADDIGHVLKFECVVVDAETKLPVGHANTILTSRVIPAPSPSPRRLIPVDGMGNVDA DGRVSSSGTFTVLSYNILSDSYASSDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQNDHYEEFFAPELDKHGY NGLYKRKTNEVFNGNINTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAMIPTTQKKSALNRLVKDNVALIVVLEAKV NNQPVDNPGKRQLLCVANTHVNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSNPGSAPHALLAMGKVDPSH PDLAIDPLSILRPHSKLVHQLPLVSAYSSFARTIGLGYEQHKRRLDSATNEPLFTNVTRDFIGALDYIFYTADSLVVESL LELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 35 | 595 | 561 | 0.0 | – | |
| PANTHER | 35 | 595 | 561 | 0.0 | – | |
| Pfam | 71 | 110 | 40 | 6.3E-8 | ||
| Gene3D | 219 | 599 | 381 | 4.1E-114 | ||
| SUPERFAMILY | 246 | 594 | 349 | 4.32E-38 | ||
| CDD | 252 | 593 | 342 | 4.02825E-160 | – | |
| Pfam | 253 | 584 | 332 | 4.6E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0743500.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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