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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0745900 |
| Transcript ID | LotjaGi1g1v0745900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT4G15630.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|A7NW78|CSPL5_VITVI CASP-like protein 1E2; TrEMBL-Plants: tr|G7KQZ0|G7KQZ0_MEDTR CASP-like protein; Found in the gene: LotjaGi1g1v0745900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131908810..131914217) extracted from Lotus japonicus Gifu genome v1.2.
TGCCACTCTCCCTCTTTGTTCTTGGAGTGGAGTGGACACTCTTCACACTCACACTACTCCACCATAGTTGCAGCAGTTTC TGTTCAGAGCACAAAACGCGCACAAGACAGTGCCGTTGAGCTGATTACACTTAGAAGTCGAAGCCTTTACCTACCCACCA TCATAAAACTTCATTCAGGTACATTTCTCTCTTCCTTCTTCGTTTTTACTTTGATTTGCCAAATGGGTATTTCAAAGTCC GAATCTTTTGTCCTCTTAACAATGAAATCAAGAAGAATTGCCTTGTGGGTTGCCCTGTATTTTGAACTATTTTGTGTCTT TTTTGTTGTTGTTGTTGCTTTCTTCATACTTTCATTTTTTTACTAGTTTTGGATTTTCGGGATTTGAAAGTTTTCCCACG CGTAGCATTGGTAGTAGCACTGTTGAAAATTGAAATAACGGGAATGGCCTTGTTCGGTGTATCTGTGTGCTGTGTTGACT GTTGAGAATAGCGAAGAGGCAGAGTCAGAGTCAGTCTCTGAGTCACTGAGTCGGTGCATTTGTTTCTTCACGCAAATTCT GATATCTTTGGTGTTTTTCGTTCTTATCATGTCTCTACGTGTGTTTTGAAACAATGTGATTGAGACTTTGCTACTGCTAG GCTAGCTGATAATTATGTTTATGCAACTTTTGGTTTAGGAATTCAAAGGTTATCTTTTGTGGTTTTAATATTATATGTTT TGTTCTTTTGATAAATAGGAGGAAGTTGGAGATAGACAAGTAAATATTGAAGGAGAAGATGCCTGAAATAACGAAGAATC AACCCTCACATTGGTGGTTTCTTGATAGCCACAGTAGTACTAAACGATCTCCATGGCTTCAATCCACTCTATCTGGTATT ATGCATGTCCTTCTTCTCTCTTCTTCATTATCAATTTGCACTTTGCAGCAATAATTTCTTTTGCTATTGCACTGCAGCAC CTTTTATATTCTTTGGTTGATTTGATTCTATAGGCTAATATGCATTTTTGATTGTGTGAAAAATGTTATTTGAGTTTGCC CTTTAATATAGACCTATAGATTATCTTCATGAATTGCTGAAGTTTTGTCCCCCGGAAATATTACTGTTTTGAGCTAAAGA AAGAGGAACAAATGAACAATAGTGTATAAACACAAAAGAGGTTTTGAGCTACCGTTATGATTTATCTGAGTGTTACTTTC CAAGTTCTTTTCCTTTTTCCACCTTTGGATTTAGCCGTTGGAGTGACCTTTGTTTGGTTTCTTTTTTACATGTATCTGTT ATGTATACCTTTTTGTGCCACATAATGATTTTATTATTAAAGGGGGAAAAGAGACTAGAGCATCTACTTGAGCACTAAGT TTATACACTCGCCTTCTACAATTTACCTATATTACAAACTATTAGCAAGTAGCAACATGATCACATACCAAAAGGAATAA GTATCACTGGCTTAAGGTTAAGGTATGGTTGAAAGAAGCATATGTTATAAAGGGAAAAGCTATAAACATCTTTGGTACAA ACTATAGACTGGTGTGGAGGTTAAAGGTATAAAAAGGTTATGTGGGAATAGGATTTCGCTGAAGAGATTAATAGCCTGTT TGGATCAGTGGTGACAGACAATACGGTGACTTAAAGTTACACATTAGCTTTTTCTCATAATTGATTGTGTGTCTTCCAAA TGTAGAACCAAACACGTTGTAAACTTATGTGTGACTCTATTGGTATGTTTAATGCAGAGCTAAATGAGAAGACGAAGGCA ATTTTAAAGTTAATTGAAGAAGATGCAGATTCCTTTGCCCAACGTGCAGAGATGTACTACAAGAAGCGACCGGAACTCGT GAGCATGGTTGAAGATTTCTACCGGACACACCGTTCACTAGCTGAGCGGTATGATCAAGTGAAACCTGACACTGGAATTA GCCATCTCACGACTGGAGGATCACCCTTTGCTTCAGCCAAATATCAAATAGAGAAGCTAATGAGTTTTGCAGATAATGGT TATGATACCTATTCTGAGGATTGTGCTATAGATGAGTATGAGGAATCTGATGTTTATGATCCTGATCAGGAGCAAGAGGA GAGGGCCAAATTTCACAACTTCACAAAAGAAGAGCAAGTTTCATTTGTGGCTTCTGCCAATGAGGAAGTGATGAAGCTGA GGGATGAAATTAAGAGACTCAATGAAGAGACCAAGGTTATCATTAAACTTTATTTATGTTAGTCACATATTTTTGAATAA TATTGACTAGAATATGACGTTTTGTTTATGTTAGTCACATATTTTTGAAATTGTTGATGCTATTTACAATTTAAATAGAT AATCCTCTTCTCCATCCTATCTACCAGGACGAAGATCTTCTATCATTAAATGATGTTTCAATTTTGTATTCGTCTAATAA AACGTTGTCAAAAGATATGAGTGAGCTAGTTATTTACTCAAAGAAGTTTGGTTTAATGGAAGGATGCTAATTGCTAGGTG AGGCTTAAGAGTGTGTATAAGGATACTCCACAAGAAGGTTTCTGACTCGATTCTTTGCAAAAAGTATCTCATTGGGGAGG AGATTTACCCATATTGCTCTAAACCTCGGGGTTGTGAAGTTCCCTCTTCATAGTTATTATTCATAAAAAAAGTTACAAAT TTCTTTGATGGTTAAAATTTTCAAAAGTATGATGTGTGCATAAGATTCTTAAGAAAATCCAATCGGCATACAACTCAACG GTGGTTTTTGGTATTCAAACTACCGCAAAATGATATGTTGAATGGACCATCACAAGAAATCGTATGTGCACCTAAAAAAT TTATTTGTAAGAGAGAAAATGAGACACAAACTTAATGGTCCAATGCTTAGCTACCTACCTTATATCTATCCATCTTGAAT AATAAATACACATAACGTTCCTTTACATTACACTAGATCCGCACTCTTCCACTAATTCAGTTTAACCTTCCTTTTCCTCT GTTCCATTTCAAAGAACAACACCAAACTCAGTGATCTTGATAAAAAATATGGGAACCCAGTCTAAGCCTGATGTGGACGG TGTCCACAGTGATGTGAAGGTGGTGGAGAAGCCAACAAGGACAAGGCCTTACGATGTGTTGCTTCGATTTCTTGCACTGT CACTCACTCTGGTGGCTACTATCATTGTGGCGGTTAACAAGGAGACAAAGACCATCTCCTATGCTGGAATGCAGTTCAAA GCCACTGCTAAGTGGGAATACATGTCTGCTATTGTGTGAGCCTCATTCTCATCTCAGTACTCTTTCACCAATTTCAAATG CACTCTGTCAAGCAACTCATAAGCATTAGCTTTTAAGATAGTTGTTTCATGATTTGGAATCAAAATATTATGACTAAATG GTCTAGATTTTAATACTTATTGAGTCATAAAAGAGTTGAATTTCAACCTAGACCTGTTGAAGCTTTCTAGTTTGGTAGTT CATGAAACTTAATACTAGTTCACATGAGATTACATATGTTTCAAATTTAGTGACTAGGTGTGTGCTTGTTTATTCATTTG ATTAAATGTGAATGTGTTTTTTCTCAATCCAACAAGTTTGCTATATTGGAAAGTTAAATATGTCTGTTAAATATGATTTC AACTAGAAAACAAACACACTCTAGCTAACATGGCATTGTATATGAAAAAATAGCATTTTTTTATTTGTGATTACTAATGC AATCTTCAATAAATTAGAGTTTGTTTCGATGTCAATTGAAGTATAAAAATCGAAAAGTAACACATTCAAGACACTTTTTG TTGCTATTTCAACAAAAAGTTGTTTCAACTTTCAACATAAATTCTCTCAATGTGTTGCATTCCAGTTTTCATATTTTCTA ACGGGTATCCAAGCCGCGGATTGTTAATTAGGTGCCACATTGTTATTTTTCCATTAAAGCTTTAGCAATCAATATCACCA TTTTATCTAAAATAGATTGTGCACCTCAAAGTAAATTTGTTTGTGTATCAGGTTTTTCTTGGTGTCAAACGCTATTGGAT GCTCCTATGCAGCTGCTTCTCTAGCCATCTCAATGGTTTCAAGAACCAGTGGAAACAAAACGGCACCGTTCCTGCTAACA GTGCTGGACCTTGTGATCATGGCGCTTCTGTTCTCAGCCAATGGCGCAGCCGCTGCAGTGGGAGTTATTGGACAGAAGGG GAACTCGCACGTACAGTGGATGAAAGTGTGCAACGTATTCAACGCTTACTGCAACCATGCCACCGCTGCTCTGGTCCTTT CTCTGATTGGATCCTCTGCTTTTCTCTTGGGGGTGGTGCACTCTGTTTTCAAACTCCATTACAGGTCAAACAAATAGATT AATTAGTACTATAGTTAAGGGTGTGCAATGCATTGGTGTGAATCTTTGTTTAGGAAGAATACCAAGGTCTTTAACCTTGG TGTAAGTTTGTATACATAATTTATTAGGCTTAATTACAACTTTGGTCCCCGACGTTTATCAATTCCACGATTTTGGTCCC CCACCTAATTTAATTACATGGATGGTCCCCGACGTTGTAGGCTGCGTGCAACGTTAGTCCTACCGTTTATTTCTTAATGG ATGAGGCTTACGTGGACGTCTAGTTGGAGAGAAAAAGGAGATCTGAGGAGAGAGGGGAGCACGTGAGTATCACGTGAACT CACGTGAACCTTATATGAACCCATTATACCCAAATCTGAAACCCTAGGGATCTAAATCGCGTTACCTTCTTCGTTCCAGG GAGGTCAGAGGTTTGGGTAAAATGGGTTCAGATAAGGGTCACGTGATACTCACGTGCTTCCCTCTCTCCTCATACCTCCT TTCTCTCTCCAACTGGACGTCCACGTAAGCCTCATCCATTAAGAAATAAACGGTAGGACTAACGTTGCACACGGCCTACA ACGTCGGGGACCATCCATGTAATTAAATTAGGTGGGGGACCAAAATTGTGGCATTGATAAACGTTTGGGACCAAAATTGC AATTAAGCCAATTTATTACTTAAGCTATTTGTGTTCGCTTCAGTTGGGGTACTATGCATTCATGTAATTTGATCCGTTCG ATCGAGATTGGTTGCTGTCAACCAATTTTGACCGAACAACTTAGATTGCGTGATTATGTGAATGCAGTAGGAATTCCATG ATTGTAGGGAATCCATCTCTGTAAGTAAGTAATGATTAAATTTAAGTGTTTTATTGTAGTAAAAACATGATCTTCTGATA CCCAGATGGTAGGTTTGTATATTTAAGAGCAGTTATACTAAATATAGCTACTTTGTTTCTGAATGTGTGATGTAGGTGAA GTTATGTTACTTCCAAAAGTAGGTCAATGTTAGTAACTCCGTAGCTACCAAAGATCAATGTATGGTTGGGTTCTTCACCC TCCTTCTTGAAAGGAGATTAATGTTTCATAGTAGTACTGGTGGTAATT
CDS sequence (LotjaGi1g1v0745900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACCCAGTCTAAGCCTGATGTGGACGGTGTCCACAGTGATGTGAAGGTGGTGGAGAAGCCAACAAGGACAAGGCC TTACGATGTGTTGCTTCGATTTCTTGCACTGTCACTCACTCTGGTGGCTACTATCATTGTGGCGGTTAACAAGGAGACAA AGACCATCTCCTATGCTGGAATGCAGTTCAAAGCCACTGCTAAGTGGGAATACATGTCTGCTATTGTGTTTTTCTTGGTG TCAAACGCTATTGGATGCTCCTATGCAGCTGCTTCTCTAGCCATCTCAATGGTTTCAAGAACCAGTGGAAACAAAACGGC ACCGTTCCTGCTAACAGTGCTGGACCTTGTGATCATGGCGCTTCTGTTCTCAGCCAATGGCGCAGCCGCTGCAGTGGGAG TTATTGGACAGAAGGGGAACTCGCACGTACAGTGGATGAAAGTGTGCAACGTATTCAACGCTTACTGCAACCATGCCACC GCTGCTCTGGTCCTTTCTCTGATTGGATCCTCTGCTTTTCTCTTGGGGGTGGTGCACTCTGTTTTCAAACTCCATTACAG GTCAAACAAATAG
Protein sequence (LotjaGi1g1v0745900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTQSKPDVDGVHSDVKVVEKPTRTRPYDVLLRFLALSLTLVATIIVAVNKETKTISYAGMQFKATAKWEYMSAIVFFLV SNAIGCSYAAASLAISMVSRTSGNKTAPFLLTVLDLVIMALLFSANGAAAAVGVIGQKGNSHVQWMKVCNVFNAYCNHAT AALVLSLIGSSAFLLGVVHSVFKLHYRSNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 7 | 188 | 182 | 1.9E-69 | – | |
| PANTHER | 7 | 188 | 182 | 1.9E-69 | – | |
| Pfam | 26 | 170 | 145 | 1.6E-38 | ||
| Phobius | 30 | 49 | 20 | - | – | |
| TMHMM | 30 | 49 | 20 | - | – | |
| TIGRFAM | 31 | 183 | 153 | 7.2E-39 | ||
| Phobius | 50 | 68 | 19 | - | – | |
| Phobius | 69 | 95 | 27 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 96 | 106 | 11 | - | – | |
| Phobius | 107 | 136 | 30 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 137 | 160 | 24 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 161 | 182 | 22 | - | – | |
| Phobius | 183 | 190 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0745900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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