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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0746900 |
| Transcript ID | LotjaGi1g1v0746900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA polymerase III polC-type; TAIR: AT5G26940.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q682U6|DPD1_ARATH Exonuclease DPD1, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7KWH7|G7KWH7_MEDTR DNA polymerase III, epsilon subunit-like protein; Found in the gene: LotjaGi1g1v0746900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131987914..131991814) extracted from Lotus japonicus Gifu genome v1.2.
AGTTTTCAAATTAATCAAATATTGAATACCTCATAAATCAAAATCACTATTTCCAACACACATTTTGTTAGATTGGGTGA ACGTGCAAGATGAAGGGAAGAGAAGTTGAGTGCAGTTGAAGTGAAAAAAGGGGCGATCCGCAACTTACGTTGTTGAACGG AGCACGCTCCCAATGTTCTGTCCCAACTTCTTCTCTCTGTCATTCTATAACTACCCATTATCGTCCAAATGCTTTTCTTC TCAGTTTCATTCACATCCTCCTTCAGGTAACTTCTCATTCTTCTCTGTTTCAATCTTTTCTTCCTGTATTGTTTTCATAC ATTTCCGGGAAAACCCAGTTATAATTTGATTGAAACAGGTCGCATTTTGTTCCATGCCGTCATGCCCATATGTTGTTTGG ATAAATGATGTAACAAAATCCCGCAAATGTGTTGTGTTGACCTTTTTGTTTGCTCGCTTAGGATTAGGATACTTTGAGGT TGGGATTTCATTGGAAAAACAGTGTTTGTTTGTGTGTGTGCAAGTTGAAGATTGTGAAAAGCTGGTTCATGGAATGTGAT TAGTGTACTATTTACATCTCATGAATCCCTTTTAGATTGGTTGATTTGTTTGCATAATATGGGTTAAATTTTGTTAAAAT GTAAGCTTTCTGTTCAGTGTTTGTTGTAGAGTTAACCATTATTGCATCCATTTCAATTATGTGACATAAAAAATCATGAG TGTTACCTTATTGTTGCCACTGCTCTGCATATTGTTTTACAAATTGATGCTGATTTTTAAAGGCAGGGCTGTGATTGTTC TTGTTCAATGAATTTTGTGATGTCAATGATAAACCTGCAGAATTTCTCCCCTTGAAGTTGTGTGCATTTCTTTTAGGCTG GGGGAAATATATATATTGCTTCTACTTTTCAGAGGGTTTTTTTTGCTGGCTCTATATGGAAAAAGCCATATTGTATTGTA ATTCAGCATAGATGTGGTTTCTTACTCAATAGGGTTTCTGCCATTCTTTGTTCTGCTTCAATAAATGATATATTTCATGC TTGTAAGGGGTCTAGTTGTCATTCTTGGTAAGAAAATTTTCTTTTTTGTTTGATATCTTTCTTTATTCTTCATCAATTTG TAAGTTGTGATTACCAGTTATATATTCATGGCTTTCTGTTATGCTGGATTTAGCATTAGAAGATCCTACCTGTATATGAT ACTTCATGCCTGTTAAGGATATTTTTTTTTTTTTCGTTTATCACATTTTTCTTTATTTCACCTTCATTTCAGGTTGTAGC TGTTTGCTAATTTAATAAAGGATTCTTGTAGTTGTTGTTATTGAATTCAGATGAAGACTGGATCGATGATTTTTTCGTTA TTGCAACTACCTAGATGCAGAATACATAGCTTAGCTAATTATTGGGGTGAAACCTTCCCCAGCTTCAGTAACCCTCAAAA TAATTCTAGCATCAGGCTGCTTAGTTCTAGAATCAATGGGCTTCAGGAAGGGCACAGAAAGAAGTGGACTCGAAGACCTA TAACTACAAACACAGAAGGCAAGGGGGGCACCAAATCAAGAAGTACCAAGCATGAAATTTTAAGTGAAACTACTTTGACA AGTTCCACAGTAAGTGTAAATAAAACACAGCTAGGTGAATTCCAGGATATTCAGTACTGTGACGTTAAAGAGATTGCTCA GAAAAAGAACTTGTCTAGCCTAGTCACTGTTATTGCTTTTGATATTGAGACCACCGGGTTCGGCGCTAAGAATCATAGGA TCATTGAGATTGCACTTAGAGACCTTCAGGGTGGTGAAAATAGCACCTTCCAAACTCTTGTAAATCCTCAACGCTATGTT CCTAATTCAGATGTTCACGGCATTACTAATCAGATGGTGAACAGCCCTGACGTTCCAAGGTAACCTATATCTCTCTGGCT CTTGCATATTTTGGTCCTTGAGTTATGCTCGCCTTTGCAAAATATAGTATTCCTCTGTGTCTCTATAGCATAACCTCATC TTATGTGTGGAATTTTATTTGATAAGCCAATGTTAAAAAAAGTTTAAATATTGGAGTGTTTAGGGGTTGCCTGGTACTCC GAATAGTCTCACATCAAAAAGATGTGGGGATACCCTGGAAAATATCCCAAAAAGATTGTAAACATGGGAAGAACACTGGG AGATTGTAAACATGGGAGGGTTTAGGGGTTGCCTGGTACTTTTGTTTTCGTTTTGACCACCATGTTTCCTTAGATATGAT CAATTGTGACCACAATCACTAGTTTACTAGGGGATTTATGAAACATTGAGCTCTTCATTTTTCAATTGTTTTAGTGTGTT TGGTAGACATTAGAACAAGGTTCTTTTCTATGTTTTGTGCATATTAAAAGTAGCACATAACATAAGGTAGGAAAAGTGGT ACATTTCAGTTCTACCTAAAGGGTTGGAACTTGGAACCAGAAAGGATTTGTGTTTTGTTGTGTTCTGTTTGTGTGCCTAA TGCTACCCAAGACTGTATACAAGAGAAACAGCATATATAATATCTTCTCACATTCATTTATTGAAAATGCCTTTCTTCGG AGTGTTTTTGGGTGGTTATGGGTAGAATTTTCCTCAAGTGGATAACTGGTTGTTCGGTTCTATATATGGGGGTTAGTAGC CCTTTAATAGTTGACTAAAGACCACGGTTGTGCAAAGTTTAAACTGACAAGACAAACACCGAAGGTGTTGACGAGGACTT TACCAACCTTGTACTATGGGTTGAAATCAGTTACTAAATGTTTTTTCGAGTGCATTTAACTTTGGAAAGAATCAGGAAGA ATCAGATTCTATATGTTTCTTCTTTATCACATGTTTCCAGTAACTATCATGTTTCCCATTTGATTTTCAATTGATTTGTT TATGTACATTGATGATTGAGTCTACTGAAACTATTAATTAATTATGCAAAGGTCATGTTTTTGTGCTCTCATGGATTTTC TATAGGATGGAGGACCTTATTCCAATCTTGTTGCACTATGTTCGAAGCCGTGAGAAACCTGGGGGATATGTATTGTGGGT TGCTCATAATGCTCGCAGCTTTGATGTACCCTTCTTCATCAATGAGTTAGGTCGTTCTTCTGTCAAGATTCCTAGTAATT GGCTATTTTTGGACACCCTTCCTTTAGGTCGTGAACTAATGATGAAGTTGAAGGCGGAGTCTGAAGGTATTACTATCTTT CTCTCTGTCTCTCTTAAGGACAAAACTTACATAAAGTTCTTTATATATATTTCATCGAGTTCTTCAACCATAACTGACTT GTGGATAACTTTTTTAAATTCAATCACCGATTCATAACAGAGTCATTTTTTATCAGAAAATAAAAATCCACGTGTCATTA TTTGAGCGGCGAATACAAATAACAAAGAACTTGATCTAAGTTTTTTTTTTCCTTCTCTTAACATCACGCACACGCGCTAA CAAGTCCTTGCTGTTTTTTTTTTTGTATGAAAGCCTTAACTTTTTACGGTGTCCCAGAGAAAAAACCTCCAGCAAACCTT GCTGCCCTCTGTGAGCACTACAATGTTAAACTAAATGGAGCAGCTCACAGAGCCATGGTGGATGTGGACGCATTGTCTGT AATCTTTTCCAGGTTGACTTTTGATCTGAAACTGACCCTATCTGACCTTGTCGAAAAATCATTCCAAGAATCAGATATTA CCAAGAAGAAGAAGAATTCAGACTAGTTTTCTGACAGTGTTTTTTGCATTCATGTTGTGACAAACATAAATTATTTGTAA CAAAAAATGTACTTCTGAAGTTACTTGTAATTGTTAACCTATTATTCTTTAATGAAATCTCATTACCATGCTCAAAATTT TGAAGCTTTTGCACGGGGATACCTATGTGTATCTGGAGCCTTGGATTGGAAGGAAAAGGAG
CDS sequence (LotjaGi1g1v0746900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACTGGATCGATGATTTTTTCGTTATTGCAACTACCTAGATGCAGAATACATAGCTTAGCTAATTATTGGGGTGA AACCTTCCCCAGCTTCAGTAACCCTCAAAATAATTCTAGCATCAGGCTGCTTAGTTCTAGAATCAATGGGCTTCAGGAAG GGCACAGAAAGAAGTGGACTCGAAGACCTATAACTACAAACACAGAAGGCAAGGGGGGCACCAAATCAAGAAGTACCAAG CATGAAATTTTAAGTGAAACTACTTTGACAAGTTCCACAGTAAGTGTAAATAAAACACAGCTAGGTGAATTCCAGGATAT TCAGTACTGTGACGTTAAAGAGATTGCTCAGAAAAAGAACTTGTCTAGCCTAGTCACTGTTATTGCTTTTGATATTGAGA CCACCGGGTTCGGCGCTAAGAATCATAGGATCATTGAGATTGCACTTAGAGACCTTCAGGGTGGTGAAAATAGCACCTTC CAAACTCTTGTAAATCCTCAACGCTATGTTCCTAATTCAGATGTTCACGGCATTACTAATCAGATGGTGAACAGCCCTGA CGTTCCAAGGATGGAGGACCTTATTCCAATCTTGTTGCACTATGTTCGAAGCCGTGAGAAACCTGGGGGATATGTATTGT GGGTTGCTCATAATGCTCGCAGCTTTGATGTACCCTTCTTCATCAATGAGTTAGGTCGTTCTTCTGTCAAGATTCCTAGT AATTGGCTATTTTTGGACACCCTTCCTTTAGGTCGTGAACTAATGATGAAGTTGAAGGCGGAGTCTGAAGGTATTACTAT CTTTCTCTCTGTCTCTCTTAAGGACAAAACTTACATAAAGTTCTTTATATATATTTCATCGAGTTCTTCAACCATAACTG ACTTGTGGATAACTTTTTTAAATTCAATCACCGATTCATAA
Protein sequence (LotjaGi1g1v0746900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTGSMIFSLLQLPRCRIHSLANYWGETFPSFSNPQNNSSIRLLSSRINGLQEGHRKKWTRRPITTNTEGKGGTKSRSTK HEILSETTLTSSTVSVNKTQLGEFQDIQYCDVKEIAQKKNLSSLVTVIAFDIETTGFGAKNHRIIEIALRDLQGGENSTF QTLVNPQRYVPNSDVHGITNQMVNSPDVPRMEDLIPILLHYVRSREKPGGYVLWVAHNARSFDVPFFINELGRSSVKIPS NWLFLDTLPLGRELMMKLKAESEGITIFLSVSLKDKTYIKFFIYISSSSSTITDLWITFLNSITDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 260 | 258 | 6.3E-76 | – | |
| PANTHER | 3 | 260 | 258 | 6.3E-76 | – | |
| MobiDBLite | 54 | 80 | 27 | - | – | |
| SUPERFAMILY | 124 | 256 | 133 | 1.14E-28 | ||
| Gene3D | 125 | 284 | 160 | 6.0E-31 | ||
| SMART | 126 | 305 | 180 | 5.5E-17 | ||
| CDD | 128 | 259 | 132 | 2.90243E-30 | – | |
| Pfam | 128 | 259 | 132 | 4.7E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0746900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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